Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SETMAR Gene 0 25.60 63.36 23.03 32.78 28.04 23.89 26.82 17.46 9.39 16.01 31.62 16.23 13.02 24.60 21.13 19.80 20.58 50.27 34.16 49.22 15.12 15.52 15.41 2 358065 Transcript 0 6.24 23.39 3.45 7.06 14.76 7.84 16.46 9.24 6.90 14.93 3.28 5.88 6.98 7.25 2.89 4.54 2.77 17.42 11.38 23.61 3.69 2.29 3.12 3 413809 Transcript 0 0.00 0.00 0.00 1.66 0.00 2.33 0.00 0.00 1.10 1.10 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 2.39 0.00 4 425046 Transcript 1 0.00 0.00 1.66 0.00 0.00 0.00 0.00 3.82 3.21 0.00 11.16 0.00 0.00 9.42 5.69 0.00 25.62 9.62 3.95 2.62 5.87 0.00 3.50 5 430981 Transcript 0 14.69 35.24 26.26 37.71 18.83 7.34 13.26 12.13 6.03 7.08 12.66 8.12 5.73 5.82 3.06 5.65 8.04 24.95 22.33 23.47 8.65 10.63 7.76 6 307483 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 425863 Transcript 0 3.11 6.31 1.42 3.63 0.00 0.00 0.00 1.64 0.00 0.00 2.47 6.30 6.17 4.77 5.19 0.00 3.74 0.00 4.80 0.00 0.00 2.51 0.00 8 358950 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.77 2.12 1.06 0.00 0.00 1.99 9 490691 Transcript 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 3.16 10 462115 Transcript 0 1.37 1.64 1.21 5.45 2.77 0.94 1.94 0.83 1.32 1.78 5.76 4.42 1.33 6.56 3.54 5.23 5.54 8.13 3.97 8.18 3.78 2.40 2.16 11 406657 Transcript 0 3.56 2.96 5.53 5.63 0.00 5.62 0.00 0.00 1.16 6.72 12.06 0.00 0.00 4.94 10.14 7.43 0.00 5.84 3.86 14.32 0.00 0.00 3.50 12 ER1a ExonRegion 0 0.00 4.91 0.00 0.00 0.00 0.76 0.23 0.00 0.00 0.00 2.40 0.00 2.10 2.18 0.20 0.00 1.48 0.64 1.87 4.70 1.06 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 16.18 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 5.26 0.00 6.82 4.53 0.00 0.00 8.70 8.54 4.80 9.65 3.03 3.00 0.00 14 E1_Ad KnownBoundary 0 0.00 3.29 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 2.42 0.00 0.00 5.42 0.00 0.00 0.00 11.40 0.00 12.78 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 10.17 0.00 0.00 0.00 1.83 1.59 0.00 0.00 0.00 5.80 0.00 4.69 6.50 4.06 0.00 3.30 5.54 3.19 14.89 2.20 0.00 0.00 16 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 17 ER1c ExonRegion 0 7.85 25.17 2.04 3.63 0.56 5.04 13.79 2.02 3.60 4.49 12.56 0.00 8.40 13.40 6.65 12.76 8.80 23.48 27.21 26.95 3.67 9.29 6.24 18 E1_Af KnownBoundary 0 10.89 27.50 6.33 8.12 3.82 7.67 14.18 6.08 8.88 10.91 9.42 6.00 0.00 2.47 4.45 23.07 8.32 68.69 39.91 18.60 2.41 14.02 14.68 19 ER1d ExonRegion 0 12.70 41.94 4.75 7.33 2.68 16.96 23.83 5.19 7.26 8.60 19.09 4.33 4.69 17.87 12.33 32.69 17.33 62.36 49.77 36.17 6.61 20.57 17.25 20 ER1e ExonRegion 0 12.70 38.64 6.13 8.18 2.68 27.51 27.80 5.19 8.65 9.18 17.40 4.33 4.69 19.49 14.51 32.69 18.15 70.21 47.78 38.30 4.41 20.84 17.62 21 ER1f ExonRegion 1 33.48 82.38 14.33 20.43 25.43 71.55 49.34 23.21 11.63 28.34 57.79 1.15 0.39 43.45 22.07 29.78 37.33 159.75 58.16 60.47 24.47 23.97 35.66 22 E1a_E3a KnownJunction 0 0.00 3.03 8.60 7.86 0.00 0.00 0.00 14.66 6.25 17.35 30.53 0.00 0.00 9.83 9.27 4.27 15.52 25.62 4.14 25.69 3.15 2.88 11.61 23 E1a_E3b KnownJunction 0 0.00 0.00 1.66 0.00 0.00 0.00 0.00 3.82 3.21 0.00 11.16 0.00 0.00 9.42 5.69 0.00 25.62 9.62 3.95 2.62 5.87 0.00 3.50 24 E1a_E4a NovelJunction 0 2.89 2.89 7.89 7.69 3.99 0.00 0.00 4.64 3.10 22.13 23.48 0.00 0.00 7.48 4.45 4.27 8.88 13.14 0.00 22.88 16.62 8.63 10.93 25 E2_Ac NovelBoundary 0 0.00 3.35 2.78 0.00 8.66 0.00 13.34 0.00 0.00 2.69 2.42 0.00 0.00 3.00 0.00 0.00 4.77 2.03 16.66 19.24 5.50 0.00 3.84 26 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.13 0.00 0.00 0.49 27 ER2b ExonRegion 0 2.12 0.73 0.26 0.00 2.29 0.26 3.22 0.62 0.00 0.49 0.00 0.00 0.00 0.35 1.24 0.42 0.00 1.98 5.01 2.13 1.26 0.15 3.15 28 ER2c ExonRegion 0 9.69 3.21 2.89 2.42 18.43 4.73 3.41 3.73 0.00 1.27 4.51 0.00 1.04 13.25 3.55 16.64 4.84 5.83 15.71 8.94 9.75 2.08 15.99 29 E2_Ad KnownBoundary 0 13.56 3.35 7.07 5.66 40.41 2.90 0.00 9.36 0.00 1.53 7.26 0.00 6.33 10.24 0.00 26.92 8.88 14.67 21.65 15.66 15.07 2.27 23.05 30 ER2d ExonRegion 0 7.72 3.82 4.91 7.30 6.08 4.73 3.86 5.34 0.89 5.45 9.61 6.47 2.78 14.26 9.98 12.65 5.19 13.45 16.48 16.64 10.91 2.29 8.44 31 E2_Da KnownBoundary 0 10.00 0.00 3.87 7.03 3.90 6.64 6.05 1.97 1.48 2.66 0.00 5.40 0.00 14.60 0.00 8.37 7.57 15.59 9.41 10.42 7.97 7.78 4.35 32 E2a_E3a KnownJunction 0 3.56 2.96 5.53 5.63 0.00 5.62 0.00 0.00 1.16 6.72 12.06 0.00 0.00 4.94 10.14 7.43 0.00 5.84 3.86 14.32 0.00 0.00 3.50 33 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 4.24 0.00 0.00 0.00 3.50 34 E2a_E4a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 3.16 35 ER2e ExonRegion 0 2.75 3.27 2.42 10.90 5.53 1.88 3.87 1.66 2.65 3.57 11.53 8.83 2.66 13.12 7.08 10.47 11.08 16.26 7.95 16.36 7.55 4.81 4.33 36 E2_Db NovelBoundary 0 7.11 5.92 3.37 19.05 0.00 0.00 0.00 4.89 6.37 3.33 7.84 13.95 0.00 29.02 11.25 7.60 11.69 7.83 3.86 14.70 2.59 14.45 12.72 37 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 Ix Intron 0 4.58 8.08 3.16 4.87 5.69 4.10 8.69 4.18 2.97 2.07 7.50 12.18 13.63 6.44 2.46 4.05 5.51 3.80 5.09 13.69 2.46 3.82 4.07 39 Ix_SR1 SilentIntronRegion 0 4.58 8.09 3.16 4.87 5.70 4.10 8.69 4.18 2.97 2.07 7.50 12.19 13.63 6.44 2.46 4.06 5.51 3.80 5.10 13.69 2.46 3.82 4.08 40 E3_Aa NovelBoundary 1 12.89 24.80 14.96 4.73 31.66 9.65 18.46 20.50 6.37 6.29 2.68 31.96 13.31 10.24 9.15 4.19 4.49 9.37 21.46 15.47 7.78 2.39 7.43 41 ER3a ExonRegion 0 25.67 44.35 29.31 32.66 36.32 27.61 33.45 19.74 10.84 24.64 45.31 19.42 17.01 39.52 23.37 32.37 23.06 92.57 57.16 65.91 22.15 23.82 26.92 42 E3_Da KnownBoundary 0 23.63 98.27 19.60 39.42 58.40 40.49 60.37 24.23 15.36 26.78 33.75 18.91 26.46 43.09 25.09 32.81 15.99 65.45 24.57 79.26 19.40 14.70 20.66 43 ER3b ExonRegion 0 28.89 93.86 41.61 39.92 32.72 22.79 32.87 31.09 17.36 25.09 51.09 30.07 11.43 43.83 19.67 35.34 18.57 63.72 40.86 83.64 20.64 22.45 20.37 44 E3_Db KnownBoundary 0 47.86 92.55 31.84 46.95 27.93 18.80 32.15 33.93 24.91 30.86 56.44 62.57 12.99 48.56 48.83 26.06 22.25 54.76 43.86 77.53 14.27 42.92 15.28 45 E3b_E3b KnownJunction 0 3.11 6.31 1.42 3.63 0.00 0.00 0.00 1.64 0.00 0.00 2.47 6.30 6.17 4.77 5.19 0.00 3.74 0.00 4.80 0.00 0.00 2.51 0.00 46 E3b_E3c KnownJunction 0 0.00 0.00 0.00 1.66 0.00 2.33 0.00 0.00 1.10 1.10 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 2.39 0.00 47 ER3c ExonRegion 0 42.52 124.60 57.03 83.74 44.21 45.00 50.91 41.45 16.56 31.42 54.26 38.41 28.29 33.81 25.35 27.90 35.09 58.60 50.44 96.30 15.15 24.25 18.65 48 E3_Ab KnownBoundary 0 67.94 189.11 65.34 86.07 25.04 36.68 63.37 20.50 12.64 26.35 46.96 31.06 18.67 41.85 35.23 35.12 39.64 73.04 61.18 94.15 16.43 22.41 23.99 49 E3_Ac KnownBoundary 0 58.16 123.14 59.93 85.60 69.44 67.52 38.51 35.57 16.23 24.77 61.70 30.16 21.59 44.15 43.02 24.10 56.10 90.16 45.27 68.52 46.52 8.63 32.27 50 ER3d ExonRegion 0 61.70 170.41 88.04 121.36 55.52 59.69 53.49 36.04 22.85 34.69 73.55 44.81 19.93 57.17 46.71 35.22 69.98 128.88 76.29 91.91 38.23 20.31 37.74 51 ER3e ExonRegion 0 35.94 155.35 88.64 117.54 37.60 47.82 42.80 31.11 28.22 46.72 84.57 57.53 26.59 83.38 64.57 35.29 49.41 192.99 99.80 110.03 49.07 39.56 47.30 52 E3_Dc KnownBoundary 0 20.82 57.36 25.28 36.89 20.03 2.56 3.44 8.71 4.57 12.87 5.00 6.30 0.00 12.07 4.45 12.13 4.58 35.15 18.54 23.27 21.68 11.21 22.96 53 E3c_E4a KnownJunction 0 40.08 108.66 36.40 69.59 37.27 37.71 21.02 28.96 21.04 46.10 54.33 44.71 25.49 87.29 54.64 28.45 39.93 104.26 68.05 83.16 30.09 16.66 12.04 54 ER3f ExonRegion 0 14.69 35.24 26.26 37.71 18.83 7.34 13.26 12.13 6.03 7.08 12.66 8.12 5.73 5.82 3.06 5.65 8.04 24.95 22.33 23.47 8.65 10.63 7.76 55 E3_Dd NovelBoundary 0 6.74 17.23 10.88 10.02 39.05 8.52 7.82 2.22 3.67 0.00 7.16 0.00 32.95 6.89 0.00 3.93 4.02 7.54 14.31 8.69 2.41 8.63 3.84 56 Ix Intron 0 15.87 23.13 7.39 12.25 12.56 5.77 10.66 8.99 4.92 4.12 5.91 10.96 12.58 4.12 2.86 4.74 3.27 5.15 7.55 13.20 2.85 10.05 6.32 57 Ix_SR1 SilentIntronRegion 0 11.68 19.94 3.73 9.64 9.99 6.01 7.20 5.53 6.47 2.99 5.18 9.36 16.76 2.54 2.35 3.07 2.51 2.22 4.25 14.84 1.52 11.50 4.77 58 Ix_AR1 ActiveIntronRegion 0 18.38 25.04 9.59 13.81 14.11 5.62 12.74 11.06 3.98 4.80 6.35 11.92 10.08 5.07 3.16 5.74 3.73 6.90 9.53 12.21 3.65 9.18 7.26 59 E4_Aa NovelBoundary 0 44.08 29.99 38.94 42.72 33.96 11.53 14.88 24.60 27.86 24.95 4.84 12.60 6.82 2.18 0.00 3.93 3.83 15.55 4.80 15.02 0.00 3.12 12.72 60 ER4a ExonRegion 0 21.68 45.94 7.44 14.60 23.70 37.01 28.06 7.18 5.68 6.84 28.98 16.54 16.38 23.89 26.02 20.44 18.82 42.04 30.33 41.45 15.27 12.06 21.68 61 E4_Da KnownBoundary 0 30.67 32.89 45.39 25.17 3.90 13.12 10.38 22.39 27.20 20.79 20.95 10.65 0.00 0.00 5.19 4.19 0.00 24.50 3.95 8.69 10.81 0.00 4.18 62 ER4b ExonRegion 0 47.35 117.26 5.26 19.94 25.79 15.87 12.67 5.28 11.13 3.44 40.93 11.84 10.10 34.68 32.52 37.37 32.85 50.59 40.97 47.70 25.43 16.28 14.11 63 E4_Db KnownBoundary 0 44.67 74.53 146.89 91.33 18.34 32.77 27.38 104.12 88.11 94.61 14.48 12.15 0.00 15.66 16.07 16.32 16.18 86.89 20.33 34.07 12.66 0.00 14.77 64 ER4c ExonRegion 0 39.13 82.64 16.33 21.35 39.94 28.19 31.02 17.21 7.91 12.02 41.79 14.70 18.39 28.49 41.37 24.60 29.46 45.89 34.53 53.39 18.05 20.56 16.03 65 E4_Dc KnownBoundary 0 2.89 22.76 23.59 0.00 17.66 10.96 13.60 4.56 1.79 0.00 2.42 0.00 6.17 7.95 0.00 3.42 4.30 9.12 9.41 24.29 0.00 5.33 4.27 66 E4_Dd KnownBoundary 0 9.41 26.05 9.61 21.61 3.82 7.67 21.73 17.05 15.54 27.59 0.00 0.00 0.00 0.00 0.00 3.76 0.00 42.03 17.51 16.30 0.00 2.45 3.67 67 ER4d ExonRegion 0 14.82 63.04 3.68 14.99 24.08 22.01 43.69 13.83 8.65 17.20 7.73 17.32 23.45 11.37 2.90 14.86 6.60 51.74 25.48 51.06 0.00 8.33 8.81 68 ER4e ExonRegion 0 12.49 41.88 6.90 14.12 29.52 14.92 32.68 18.49 13.81 29.85 4.17 11.76 11.86 12.32 5.58 9.07 4.06 34.20 20.89 42.52 6.31 4.57 6.23