Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TGFBR2 Gene 0 411.30 17.08 59.23 132.41 296.41 91.68 74.09 134.84 220.42 41.01 84.67 27.61 1.92 11.06 1.93 145.31 55.06 0.72 13.08 0.72 535.25 344.77 179.12 2 295754 Transcript 0 26.71 1.68 10.54 17.00 32.95 20.80 12.76 20.80 80.76 8.12 35.78 12.91 0.00 5.49 0.00 92.09 24.44 0.00 11.05 1.63 201.45 144.23 129.33 3 383765 Transcript 0 3.96 0.00 0.00 0.01 2.92 0.00 1.42 0.81 0.58 0.00 0.01 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 1.04 0.34 0.90 4 359013 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 427981 Transcript 0 4.28 0.00 0.00 0.48 3.19 0.00 0.94 1.82 1.55 0.20 0.01 0.00 0.00 0.00 0.00 2.12 1.18 0.00 0.38 0.00 0.26 0.00 0.70 6 439925 Transcript 0 26.46 2.03 5.51 27.94 32.78 20.17 9.60 25.49 67.93 12.03 22.23 11.91 0.00 4.06 0.00 42.35 15.68 0.00 3.98 0.00 143.93 82.30 59.47 7 ER1a ExonRegion 0 4.00 0.00 0.00 0.25 5.89 4.40 1.18 2.37 5.08 0.05 7.17 1.82 0.00 1.45 0.00 13.88 4.65 0.00 0.92 0.00 21.00 2.19 9.57 8 E1_Ab KnownBoundary 0 7.19 0.00 0.00 1.60 27.25 15.96 4.15 1.93 13.31 0.00 9.69 0.00 0.00 4.59 0.00 21.36 13.37 0.00 4.80 0.00 28.48 5.33 7.77 9 ER1b ExonRegion 0 13.55 2.35 5.41 9.90 21.65 19.44 7.03 15.15 43.70 6.41 21.92 1.24 0.00 4.76 0.12 41.03 17.57 1.12 2.22 0.41 205.20 49.18 59.93 10 E1a_E3a KnownJunction 0 12.82 0.00 9.67 14.75 57.56 7.84 5.48 17.62 39.38 2.90 16.48 0.00 0.00 2.35 4.45 10.60 11.97 0.00 0.00 0.00 131.59 29.64 33.04 11 E1a_E4a KnownJunction 0 49.42 3.35 21.08 33.76 60.02 37.19 24.33 39.23 156.45 16.20 64.38 24.01 0.00 9.54 0.00 170.30 44.23 0.00 21.18 3.26 381.91 286.27 249.09 12 ER2a ExonRegion 0 12.85 0.00 0.00 1.45 9.58 0.00 2.83 5.45 4.65 0.59 0.03 0.00 0.00 0.00 0.00 6.36 3.53 0.00 1.14 0.00 0.79 0.00 2.09 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 I2_AR1 ActiveIntronRegion 0 139.90 1.43 4.91 8.56 43.40 2.08 16.65 14.81 7.77 3.84 1.56 0.00 0.00 0.00 0.00 5.17 1.33 0.00 0.00 0.00 2.76 0.56 2.13 15 I2_SR2 SilentIntronRegion 0 133.18 0.92 3.90 6.35 21.88 2.49 9.88 8.34 3.36 2.56 0.29 1.08 0.00 0.00 0.00 4.93 1.00 0.42 0.48 0.00 2.16 0.63 2.92 16 E3_Aa NovelBoundary 1 465.93 0.00 14.07 15.12 91.00 2.56 37.14 23.86 14.50 3.20 0.00 19.36 0.00 0.00 0.00 0.00 8.70 0.00 9.32 0.00 0.00 0.00 3.50 17 ER3a ExonRegion 0 295.61 0.00 7.14 17.55 41.24 10.54 18.87 15.95 49.36 5.32 19.43 2.42 0.00 3.12 0.77 39.43 17.87 0.00 2.25 0.00 104.54 54.89 48.67 18 E3a_E4a KnownJunction 0 9.63 0.00 6.83 19.61 23.60 7.55 23.01 23.70 63.05 8.84 2.42 0.00 0.00 2.41 0.00 59.73 21.51 0.00 0.00 0.00 118.98 99.44 83.66 19 I3_SR1 SilentIntronRegion 0 87.68 0.00 2.91 9.33 30.03 3.34 12.16 9.25 7.95 0.70 0.00 0.00 0.00 0.00 0.00 4.67 2.40 0.00 2.32 0.00 0.00 1.28 2.14 20 ER4a ExonRegion 0 81.15 6.80 28.31 57.31 83.50 49.00 31.36 108.28 243.76 29.98 106.90 23.98 3.86 14.78 1.24 143.28 83.66 1.52 18.23 0.69 831.15 353.71 223.72 21 E4a_E5a KnownJunction 0 82.09 18.15 40.36 96.66 128.69 50.20 29.77 196.29 336.74 57.65 111.24 30.61 13.64 9.54 0.00 120.48 67.79 1.82 23.62 3.26 842.21 453.62 219.04 22 ER5a ExonRegion 0 88.25 7.20 23.33 79.08 119.76 81.29 39.05 106.59 248.54 35.42 129.18 40.96 5.87 15.78 0.00 223.45 78.93 0.13 22.60 0.29 777.15 444.20 280.35 23 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E7b KnownJunction 0 140.91 6.05 28.36 115.50 130.82 99.20 45.22 105.97 264.49 45.99 94.50 37.06 0.00 21.72 0.00 163.89 64.05 0.00 17.32 0.00 550.62 329.80 256.94 25 ER6a ExonRegion 0 11.88 0.00 0.00 0.04 8.77 0.00 4.27 2.43 1.74 0.00 0.02 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 3.12 1.02 2.69 26 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER7a ExonRegion 0 52.91 4.07 11.03 55.88 65.56 40.34 19.20 50.99 135.86 22.94 44.46 23.81 0.00 8.12 0.00 84.71 31.36 0.00 7.96 0.00 285.38 164.60 118.93 28 ER7b ExonRegion 0 99.43 5.98 29.00 101.72 100.15 75.11 38.68 82.38 262.25 32.07 108.98 40.06 3.12 17.37 1.13 188.39 72.68 0.00 18.84 0.42 917.97 315.86 241.39 29 E7_Da KnownBoundary 1 98.46 11.25 21.82 44.62 87.18 76.72 19.65 50.81 169.88 27.16 118.29 5.55 7.47 9.77 0.00 162.35 49.65 0.00 13.08 0.00 755.60 229.01 200.43 30 E7a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E7_Db KnownBoundary 0 115.06 9.60 26.88 43.95 112.31 49.86 24.60 65.06 184.49 30.97 96.45 50.12 0.00 14.77 10.63 122.36 58.63 0.00 0.00 3.20 745.71 227.67 219.98 32 E7b_E7d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 33 ER7c ExonRegion 0 101.29 9.88 33.61 53.35 108.05 84.44 23.33 77.53 242.67 37.19 131.25 32.78 0.00 14.31 5.39 172.81 72.62 0.00 7.89 2.13 989.99 273.14 256.05 34 ER7d ExonRegion 0 90.62 12.20 40.09 55.80 121.49 74.81 33.97 92.68 256.00 34.85 108.53 26.87 0.00 14.38 2.97 142.12 67.67 0.16 11.77 0.49 807.69 265.65 207.43 35 E7_Ac KnownBoundary 1 129.95 11.05 22.35 56.14 137.35 67.40 35.24 59.06 183.77 22.70 104.61 6.30 0.00 21.96 0.00 146.12 47.03 0.00 9.13 0.00 723.72 192.33 196.76 36 E7_Ad KnownBoundary 0 173.22 3.35 34.12 77.38 93.55 56.90 47.56 72.62 163.92 38.39 101.39 42.76 0.00 19.19 4.45 140.13 81.25 2.57 4.71 0.00 785.50 241.26 187.37 37 ER7e ExonRegion 0 135.85 6.63 35.85 83.14 121.50 66.76 42.07 80.79 224.33 36.74 129.86 28.54 0.00 22.38 0.97 154.11 72.38 1.85 9.32 0.00 870.14 254.96 212.31 38 ER7f ExonRegion 0 116.18 4.94 36.67 71.76 124.99 71.71 39.80 77.42 198.34 32.47 79.56 13.70 0.00 12.61 3.25 175.38 61.94 1.41 8.42 1.43 811.03 269.56 228.23 39 E7c_E8a KnownJunction 0 122.84 3.03 40.65 70.92 148.64 66.50 41.82 72.95 219.88 37.34 84.07 25.21 0.00 15.01 0.00 182.60 61.06 0.00 0.00 9.01 862.78 311.07 241.07 40 ER8a ExonRegion 0 151.36 3.94 45.67 88.20 150.26 78.79 43.19 98.56 261.41 39.92 105.75 19.57 0.00 19.57 3.86 192.23 72.71 0.00 14.22 1.99 907.42 319.10 299.35 41 E8a_E9a KnownJunction 1 218.85 3.35 45.15 81.04 206.45 65.64 55.73 90.81 230.93 42.52 110.66 7.65 0.00 24.07 0.00 197.13 53.76 0.00 48.00 5.69 738.73 247.51 213.15 42 I8_AR4 ActiveIntronRegion 0 223.36 2.02 2.82 8.74 45.49 3.04 9.50 7.68 3.05 2.64 2.13 0.79 0.00 0.15 0.00 5.25 2.19 0.00 1.05 0.00 10.22 2.30 4.21 43 I8_SR5 SilentIntronRegion 0 124.61 1.92 3.11 3.57 34.75 3.01 10.43 11.24 6.58 1.54 1.04 2.18 0.00 0.00 0.00 8.15 2.98 0.23 0.00 0.00 10.51 2.81 3.62 44 ER9a ExonRegion 0 164.79 10.47 35.74 80.63 161.90 88.55 48.16 103.07 256.39 44.65 112.59 20.19 0.00 22.23 1.97 204.38 72.80 0.00 18.76 0.62 946.10 301.90 249.98 45 E9a_E10a KnownJunction 0 212.48 3.35 23.65 86.77 159.00 93.70 59.05 120.14 239.41 57.46 97.08 31.81 5.84 12.48 0.00 164.40 86.21 0.00 0.00 0.00 905.47 222.89 241.32 46 E10_Aa NovelBoundary 0 10.74 0.00 0.00 0.00 0.00 0.00 0.00 6.00 1.13 0.00 6.16 0.00 0.00 0.00 10.75 4.36 4.21 0.00 0.00 0.00 5.13 0.00 0.00 47 ER10a ExonRegion 0 155.07 12.63 36.32 87.76 155.66 75.80 48.03 109.72 223.42 45.27 92.20 18.51 0.50 12.87 1.06 166.28 69.06 0.64 12.18 0.44 796.76 321.07 175.73 48 E10_Da KnownBoundary 0 341.69 21.84 68.36 146.87 218.59 105.05 75.56 207.75 259.98 66.21 116.45 31.06 0.00 4.89 0.00 119.37 45.25 1.66 14.78 3.26 630.75 479.46 131.63 49 ER10b ExonRegion 1 256.32 20.36 40.89 101.10 261.16 98.30 62.79 150.35 216.32 51.33 87.33 9.49 2.53 11.62 0.00 77.16 44.60 0.99 8.00 0.55 348.95 456.18 104.14 50 E10_Db KnownBoundary 0 398.52 33.02 21.94 30.70 437.35 160.19 84.92 71.35 113.48 24.31 55.65 12.60 0.00 11.83 0.00 66.14 28.61 0.00 4.80 0.00 170.38 462.44 74.95 51 ER10c ExonRegion 0 788.19 30.20 100.81 220.88 536.35 135.14 125.99 211.56 277.36 57.52 96.36 39.92 2.84 10.47 2.75 163.20 58.18 0.88 16.05 0.87 444.65 475.01 192.40 52 ER10d ExonRegion 0 43.12 0.00 0.00 1.02 8.70 4.81 1.32 0.00 2.62 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 53 IG36_AR1 ActiveIntergenicRegion 0 101.71 0.00 2.61 6.70 42.09 0.00 9.37 4.88 2.63 0.81 0.00 0.00 0.00 0.00 0.00 5.61 0.00 0.00 0.00 0.00 3.11 1.99 1.40 54 IG36_AR2 ActiveIntergenicRegion 0 28.57 0.00 0.00 3.41 2.68 0.00 3.31 4.32 6.79 0.57 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 3.31 0.00 0.00 55 IG36_SR1 SilentIntergenicRegion 0 28.13 0.72 0.95 2.51 12.39 1.52 3.18 3.85 5.81 0.93 0.96 0.79 0.00 0.13 0.00 3.25 2.04 0.00 0.15 0.00 3.60 4.06 2.93 56 IG36_AR3 ActiveIntergenicRegion 0 26.56 0.45 1.92 1.52 11.05 1.52 4.18 2.85 3.60 0.57 0.75 0.32 0.00 0.25 0.00 1.44 1.19 0.00 0.39 0.00 3.17 3.69 2.44