Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BRPF1 Gene 0 34.15 33.12 56.21 29.75 28.06 33.31 36.78 38.21 22.13 37.77 91.74 34.54 32.67 93.60 69.18 85.79 67.19 75.46 61.99 45.35 47.24 40.84 39.90 2 433861 Transcript 0 0.00 0.00 6.70 5.06 2.12 2.38 0.00 3.31 1.72 4.63 20.78 3.15 0.00 6.60 0.00 10.81 9.55 7.17 2.21 3.29 12.32 5.48 5.46 3 424362 Transcript 0 19.63 15.26 63.72 16.81 22.16 20.61 18.37 29.04 7.20 26.30 69.28 27.16 19.80 48.91 70.34 52.38 60.03 48.33 32.19 23.46 37.93 21.68 14.34 4 383829 Transcript 0 8.63 4.45 19.41 0.91 7.81 3.96 9.21 11.39 4.96 7.71 36.49 4.02 13.20 44.24 33.86 40.81 21.40 17.03 14.34 13.27 7.08 10.94 9.45 5 302054 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 420291 Transcript 0 0.37 0.70 2.18 0.52 0.46 1.10 0.34 1.32 0.84 0.59 4.08 1.84 1.40 1.89 0.53 1.01 1.98 0.72 0.80 1.83 1.30 0.36 1.26 7 426583 Transcript 0 0.00 0.24 0.90 0.25 0.66 0.67 0.16 0.95 0.23 0.21 1.41 0.44 1.42 1.26 1.05 0.73 1.62 0.68 0.39 0.52 0.27 0.26 1.08 8 457855 Transcript 0 5.29 5.08 6.74 4.77 2.68 11.00 5.96 11.23 7.41 12.62 41.56 12.99 2.35 34.92 23.21 20.80 31.36 27.72 11.15 15.96 23.14 10.42 11.75 9 469066 Transcript 0 1.74 0.72 1.51 1.68 1.58 0.87 0.63 2.43 1.63 0.99 1.60 0.78 0.00 1.89 1.49 3.16 1.95 2.84 0.38 2.77 0.78 1.23 0.35 10 497565 Transcript 0 26.20 4.92 13.78 7.05 5.74 11.59 14.79 13.54 3.09 10.46 21.92 14.04 17.03 47.98 22.39 30.76 29.42 26.07 21.22 11.30 10.63 17.11 25.49 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.34 0.00 0.00 0.96 0.00 0.00 0.58 0.00 0.00 0.13 0.00 0.00 0.17 12 ER1b ExonRegion 0 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.04 0.00 1.84 3.09 4.33 0.00 1.62 0.00 0.00 3.30 0.00 0.00 2.13 0.44 0.00 4.11 13 ER1c ExonRegion 0 1.67 3.80 0.00 0.00 0.00 2.08 1.85 1.73 0.00 2.90 9.87 4.22 0.00 4.06 0.38 3.75 7.73 1.46 1.17 4.09 2.90 0.00 13.21 14 E1_Ad KnownBoundary 0 3.78 6.12 1.57 0.00 0.00 8.29 6.01 2.55 0.00 5.86 16.27 5.40 0.00 5.42 0.00 15.64 12.25 7.63 0.00 5.56 2.72 0.00 15.88 15 ER1d ExonRegion 0 3.34 3.43 4.18 3.99 1.95 7.64 3.78 7.86 3.42 9.47 27.08 6.43 3.38 32.44 18.97 27.74 23.36 17.60 21.53 14.51 16.62 5.69 14.24 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E4b KnownJunction 1 10.30 6.12 7.39 11.22 0.00 32.71 13.91 23.29 10.47 27.10 77.39 12.75 0.00 74.70 36.22 40.16 57.04 38.43 21.55 41.61 38.43 21.49 33.04 18 ER2a ExonRegion 0 0.00 0.48 1.79 0.50 1.31 1.35 0.32 1.89 0.45 0.42 2.82 0.87 2.84 2.53 2.09 1.46 3.24 1.35 0.78 1.04 0.54 0.51 2.16 19 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E3_Aa NovelBoundary 0 3.26 3.35 13.81 4.03 4.33 17.38 6.49 1.56 1.79 2.90 4.58 0.00 0.00 19.78 0.00 3.93 3.46 0.00 13.37 3.26 0.00 2.51 0.00 21 ER3a ExonRegion 0 1.10 2.10 6.55 1.57 1.38 3.31 1.02 3.95 1.37 1.76 7.65 5.51 4.19 5.66 1.58 3.03 5.95 2.17 2.41 5.48 0.95 1.07 3.78 22 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 23 ER4a ExonRegion 0 5.29 5.08 6.74 4.77 2.68 11.00 5.96 11.23 7.41 12.62 41.56 12.99 2.35 34.92 23.21 20.80 31.36 27.72 11.15 15.96 23.14 10.42 11.75 24 ER4b ExonRegion 0 16.71 18.34 42.18 18.21 11.19 23.58 27.42 40.50 25.82 33.50 102.79 46.77 47.90 123.76 81.63 90.31 89.22 92.17 69.71 54.54 66.14 40.12 45.05 25 E4_Da KnownBoundary 0 0.00 8.55 35.84 16.18 4.33 37.14 20.80 28.18 19.24 27.02 72.33 35.86 48.37 125.55 68.11 68.02 57.13 46.97 117.56 43.91 43.68 67.85 14.51 26 E4_Db KnownBoundary 0 7.56 24.27 40.15 28.60 0.00 23.68 20.67 19.96 20.72 36.00 55.80 12.60 13.80 43.20 47.96 32.81 74.24 62.64 50.26 55.16 39.11 29.33 24.50 27 ER4c ExonRegion 0 4.23 16.13 50.57 29.98 3.39 37.29 24.89 30.88 29.97 48.55 89.17 33.48 50.03 154.18 98.64 71.53 78.12 76.37 110.00 69.50 56.71 65.28 28.39 28 ER4d ExonRegion 0 16.55 20.49 48.24 26.29 19.88 29.54 37.93 42.03 32.25 51.54 133.34 70.69 56.96 135.57 72.21 91.41 95.57 112.21 96.48 67.85 68.87 50.44 41.95 29 E4c_E5a KnownJunction 0 10.67 9.21 46.63 27.00 11.97 24.08 38.24 25.79 28.10 47.79 100.34 88.38 68.50 141.97 82.45 87.41 106.78 106.54 56.85 48.39 62.89 40.05 27.74 30 ER5a ExonRegion 0 19.23 25.85 51.82 28.08 17.36 29.15 31.70 41.31 31.57 45.33 113.57 43.82 38.15 113.46 65.22 101.29 76.47 104.89 76.64 64.95 60.60 46.46 44.88 31 E5a_E6a KnownJunction 0 33.64 41.51 73.83 28.80 19.44 35.15 39.83 25.30 20.63 43.84 104.97 12.60 48.70 74.64 38.45 76.73 90.14 100.57 53.27 69.93 30.89 37.17 47.55 32 ER6a ExonRegion 0 28.18 32.86 68.03 33.14 28.50 34.83 33.86 38.25 25.84 48.66 111.01 30.84 44.71 108.13 77.43 80.85 90.70 80.17 70.82 65.11 56.07 45.45 44.19 33 E6a_E7a KnownJunction 0 51.05 66.30 70.87 42.22 61.38 32.94 51.85 33.43 14.03 60.17 140.25 56.72 26.95 96.24 132.64 150.47 93.88 113.67 97.70 69.48 57.70 59.03 47.38 34 E7_Aa NovelBoundary 0 25.26 3.29 3.25 1.93 0.00 19.82 1.94 4.56 4.57 1.67 4.90 18.31 6.01 0.00 8.90 14.36 16.92 9.37 4.14 6.20 3.15 3.12 4.18 35 ER7a ExonRegion 0 48.44 49.90 65.57 42.28 38.43 45.08 50.06 48.19 24.78 65.26 123.68 41.10 43.84 143.38 83.87 112.40 102.35 113.90 62.36 59.33 63.57 52.96 51.77 36 E7a_E8a KnownJunction 0 54.38 85.38 66.20 45.25 47.54 84.16 66.38 62.97 40.91 76.34 124.08 62.42 52.76 164.93 96.42 153.21 115.66 96.09 64.28 58.61 53.68 77.22 66.24 37 ER8a ExonRegion 0 42.10 92.74 73.22 61.62 57.97 65.05 75.38 65.08 31.29 67.69 136.32 58.77 56.43 141.05 77.46 115.20 106.47 106.84 84.70 53.03 56.15 66.87 52.29 38 E8_Da NovelBoundary 0 10.59 12.89 31.10 1.73 15.53 17.49 22.61 24.23 8.88 12.97 23.80 0.00 12.99 50.86 27.20 60.58 15.52 27.90 15.44 18.66 17.36 20.94 23.82 39 E8a_E9a KnownJunction 0 47.79 63.02 67.44 60.73 57.81 87.34 73.80 34.63 42.97 68.93 77.12 48.02 60.87 62.45 35.85 62.89 103.32 104.13 49.04 53.31 39.54 28.72 38.58 40 E8b_E9a KnownJunction 0 16.60 2.96 31.19 1.37 8.57 2.73 12.63 19.39 7.55 11.71 59.96 6.30 19.80 71.81 47.59 60.84 39.27 24.08 25.51 20.90 8.15 15.68 15.45 41 ER8b ExonRegion 0 9.29 10.39 27.03 1.36 14.87 9.17 15.00 14.79 7.34 11.41 49.50 5.77 19.80 60.90 54.00 61.59 24.94 27.00 17.52 18.91 13.10 17.13 12.89 42 E9_Aa NovelBoundary 0 6.74 5.39 3.67 3.30 21.73 8.23 9.32 6.65 6.02 5.88 4.47 5.55 0.00 4.59 18.54 3.85 8.04 1.70 0.00 5.50 3.15 2.51 4.27 43 ER9a ExonRegion 0 47.21 65.55 98.20 61.14 54.96 52.43 73.48 68.78 32.31 59.59 125.22 66.30 53.38 137.26 90.17 139.71 91.21 115.39 89.78 80.48 62.32 70.47 62.10 44 E9a_E11a KnownJunction 0 23.34 12.43 25.78 8.79 14.77 0.00 16.03 6.45 13.83 12.33 33.43 0.00 0.00 19.42 52.41 18.20 13.00 5.35 17.88 16.68 17.24 11.51 8.37 45 E9a_E11b KnownJunction 0 19.63 15.26 63.72 16.81 22.16 20.61 18.37 29.04 7.20 26.30 69.28 27.16 19.80 48.91 70.34 52.38 60.03 48.33 32.19 23.46 37.93 21.68 14.34 46 ER10a ExonRegion 0 3.49 1.44 3.02 3.36 3.16 1.73 1.25 4.87 3.25 1.98 3.19 1.56 0.00 3.79 2.98 6.32 3.90 3.90 0.75 2.92 1.56 2.46 0.69 47 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 2.62 0.00 0.00 0.00 48 ER11a ExonRegion 0 21.69 17.79 34.62 7.84 15.39 5.50 18.20 9.07 10.50 13.48 44.46 21.65 18.76 32.89 52.22 24.52 27.23 18.94 23.89 25.00 31.95 17.19 13.21 49 ER11b ExonRegion 0 37.54 31.69 79.29 23.00 18.67 35.96 31.74 30.83 22.63 27.40 86.09 26.32 25.93 94.05 79.34 80.36 75.41 74.27 60.73 43.34 46.01 29.21 34.66 50 E11_Da KnownBoundary 0 13.85 54.92 101.03 32.70 18.76 47.25 31.97 47.36 28.07 34.03 90.02 45.16 53.24 95.94 67.50 138.51 86.30 104.79 74.45 48.70 42.38 50.46 39.27 51 ER11c ExonRegion 0 12.66 27.95 84.76 27.39 16.99 60.84 37.05 26.01 26.12 33.91 122.61 28.30 24.64 89.88 63.55 80.98 63.59 74.29 62.78 39.24 42.85 37.37 32.22 52 E11b_E12a KnownJunction 1 34.08 54.00 65.99 27.87 27.33 55.03 36.26 16.92 18.69 46.28 143.09 7.65 7.63 78.93 76.89 76.22 65.64 90.62 91.67 68.07 33.67 26.27 28.00 53 E11b_E13a KnownJunction 0 0.00 0.00 13.39 10.12 4.24 4.77 0.00 6.61 3.44 9.19 41.22 6.30 0.00 12.24 0.00 21.62 18.51 14.34 4.42 6.46 24.65 10.96 10.76 54 ER12a ExonRegion 0 30.88 31.31 59.51 29.29 21.78 43.31 33.84 58.85 23.87 49.66 108.32 29.65 26.08 103.69 83.73 117.63 71.47 101.65 87.11 41.71 48.20 48.77 57.14 55 E12a_E13a KnownJunction 0 26.82 48.48 75.54 21.88 29.63 24.64 33.08 41.03 22.68 29.66 104.34 13.05 33.28 75.23 21.14 60.67 77.51 52.73 46.31 19.18 49.48 45.19 26.63 56 ER13a ExonRegion 0 25.97 32.98 77.89 23.13 23.79 40.00 45.77 45.92 23.23 36.17 128.62 48.68 38.91 92.62 37.09 71.09 101.61 57.33 57.94 33.75 76.59 46.01 47.22 57 E13_Ab KnownBoundary 0 30.75 40.58 90.09 36.23 38.03 52.47 79.40 54.26 26.74 54.42 121.72 74.57 44.80 95.00 51.18 72.89 102.76 85.10 83.86 47.11 69.01 50.76 53.61 58 ER13b ExonRegion 0 26.14 49.08 90.41 40.51 35.24 45.98 54.84 57.01 27.97 51.85 123.48 54.06 56.32 123.68 93.94 106.11 74.37 88.24 59.12 49.93 66.07 45.01 51.17 59 E13a_E14a KnownJunction 0 40.38 73.21 111.05 56.80 32.17 38.10 53.70 55.33 41.78 62.05 150.41 54.47 47.07 165.40 151.06 147.40 90.70 135.47 84.61 62.13 94.70 101.71 83.06 60 ER14a ExonRegion 0 41.96 40.17 77.23 48.30 29.12 31.03 43.85 46.39 25.84 43.52 102.71 45.48 40.67 127.03 84.90 95.43 81.97 92.55 74.75 49.71 70.66 55.78 64.91 61 E14_Da KnownBoundary 0 16.08 6.12 8.99 9.39 6.96 2.84 21.24 12.36 3.94 4.11 14.48 12.60 6.82 36.61 28.31 26.40 23.94 32.38 16.09 8.50 2.35 5.94 10.67 62 E14a_E14b KnownJunction 0 42.08 40.39 69.19 60.07 26.57 34.92 23.80 27.15 17.82 27.37 89.60 30.61 33.11 70.93 66.38 71.61 33.29 87.01 82.07 26.91 46.77 14.02 12.72 63 ER14b ExonRegion 0 26.20 4.92 13.78 7.05 5.74 11.59 14.79 13.54 3.09 10.46 21.92 14.04 17.03 47.98 22.39 30.76 29.42 26.07 21.22 11.30 10.63 17.11 25.49 64 E14_Ab KnownBoundary 1 63.05 5.99 12.48 3.03 4.07 10.62 19.70 8.01 3.33 7.28 22.43 31.06 13.47 73.99 13.35 24.52 25.99 15.71 8.28 15.28 5.07 11.70 20.91 65 ER14c ExonRegion 0 57.70 44.01 95.21 52.11 30.79 43.98 48.58 54.07 25.54 46.04 116.73 39.59 25.60 111.07 94.46 101.23 88.76 88.54 61.95 44.25 69.53 49.42 37.60 66 E14b_E15a KnownJunction 0 94.31 71.83 103.72 68.22 61.38 109.88 124.10 61.82 38.14 73.12 149.20 28.96 25.81 134.56 93.58 148.68 129.78 101.81 89.98 59.70 72.59 42.74 40.80 67 ER15a ExonRegion 0 53.83 53.82 104.12 58.96 44.97 58.94 72.40 66.21 28.42 67.40 139.58 42.76 48.26 134.34 116.71 165.90 95.73 114.12 102.59 50.53 65.70 70.61 74.04 68 E15a_E16a KnownJunction 0 50.53 29.67 100.79 68.86 29.63 60.08 51.58 45.35 32.75 52.17 100.76 68.27 19.80 144.62 173.44 212.68 88.64 139.86 87.63 51.58 54.98 108.20 74.52 69 ER16a ExonRegion 0 27.81 31.04 115.15 74.30 33.82 41.17 54.80 64.06 32.38 61.79 145.27 58.79 35.61 126.20 144.52 129.33 122.24 71.83 79.34 61.07 82.36 75.10 50.01 70 E16_Da KnownBoundary 0 52.23 45.98 157.95 98.42 29.29 50.77 63.46 89.25 32.75 74.78 144.83 25.21 46.59 115.13 180.23 120.22 122.30 69.39 60.71 81.05 96.25 34.17 52.93 71 ER16b ExonRegion 0 89.20 60.12 97.19 49.66 67.53 54.52 59.37 51.68 26.87 46.53 112.64 31.15 34.45 104.86 126.42 110.86 77.58 80.14 71.04 51.12 53.66 59.98 51.07 72 E16_Db KnownBoundary 0 17.86 6.45 18.36 9.86 10.87 7.21 10.29 10.19 4.43 15.98 4.42 0.00 0.00 6.65 0.00 0.00 16.74 1.78 28.24 2.88 2.41 22.72 0.00 73 ER16c ExonRegion 1 158.09 98.09 11.11 8.35 107.28 55.63 78.73 8.37 2.17 13.63 27.45 12.04 39.79 29.69 38.46 84.87 31.02 5.51 65.55 8.01 10.67 22.35 30.35 74 ER16d ExonRegion 0 3.48 2.61 0.18 0.10 0.38 0.26 0.38 0.00 0.00 0.90 0.97 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 75 ER16e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00