Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLCL2 Gene 0 37.97 40.82 27.11 29.01 48.69 31.70 32.20 26.55 23.32 21.55 103.26 160.76 132.28 79.66 76.64 93.71 58.37 15.13 7.27 21.45 25.30 52.66 19.36 2 460467 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 396755 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 418129 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 285094 Transcript 0 5.03 4.07 0.77 0.85 1.00 0.00 4.63 0.86 1.54 0.00 2.90 3.25 3.52 3.25 2.54 7.80 0.00 0.00 0.80 0.00 0.00 0.00 0.37 6 432376 Transcript 0 1.34 1.54 0.46 0.51 1.69 0.69 1.49 0.64 0.70 0.65 1.46 6.57 0.42 0.88 2.95 1.88 1.25 0.35 0.40 0.54 0.56 0.00 0.37 7 419842 Transcript 0 6.97 5.20 2.07 5.08 2.26 1.55 8.57 3.14 3.20 2.87 4.76 7.14 8.37 3.37 2.16 12.31 6.28 2.04 0.00 2.52 0.00 5.05 0.99 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 2.63 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 5.63 16.82 11 ER2a ExonRegion 0 0.78 2.55 0.83 0.56 0.91 3.76 3.04 2.33 3.11 1.56 18.49 4.88 7.26 20.74 8.33 22.19 10.55 4.00 0.39 2.75 8.94 3.69 4.99 12 E2a_E4a KnownJunction 1 0.00 25.06 4.32 2.63 8.06 42.31 19.34 6.65 11.20 8.43 84.55 6.30 40.74 93.94 63.29 94.68 42.54 11.48 0.00 14.32 23.85 24.49 15.79 13 I2_SR7 SilentIntronRegion 0 16.21 6.97 3.41 1.70 7.99 1.23 11.64 2.09 1.90 1.15 0.89 9.03 6.33 0.34 3.39 7.03 3.99 0.95 0.57 1.51 2.13 0.07 1.11 14 I2_SR9 SilentIntronRegion 0 11.36 8.14 3.02 3.20 7.53 0.85 10.25 4.29 2.71 2.35 0.68 13.66 11.99 0.29 2.32 7.24 4.47 1.36 0.75 2.38 0.54 0.29 2.05 15 ER3a ExonRegion 0 2.67 3.08 0.92 1.03 3.38 1.39 2.99 1.27 1.39 1.29 2.93 6.84 0.84 1.76 5.90 3.75 2.50 0.70 0.80 1.07 1.11 0.00 0.74 16 E3_Da NovelBoundary 0 3.78 0.00 4.29 1.70 0.00 0.00 0.00 0.00 1.22 1.21 0.00 13.50 6.82 0.00 4.45 8.03 0.00 0.00 22.68 0.00 0.00 0.00 0.00 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I3_SR1 SilentIntronRegion 0 20.97 11.13 2.02 2.48 9.80 0.23 7.92 1.97 0.93 0.93 0.64 8.01 6.48 0.77 3.55 4.14 2.61 0.63 1.30 2.23 0.63 0.31 1.10 19 I3_AR1 ActiveIntronRegion 0 65.02 23.57 7.79 5.32 33.52 0.20 15.90 5.03 2.82 3.60 0.43 13.99 6.79 0.77 1.17 11.72 5.12 2.61 0.78 3.27 1.98 0.32 1.95 20 I3_AR2 ActiveIntronRegion 0 12.88 1.58 3.39 4.40 7.33 0.17 10.40 11.12 5.04 1.73 2.84 12.57 7.42 1.19 2.88 3.60 1.21 0.43 1.80 2.78 0.58 1.53 1.08 21 ER4a ExonRegion 1 8.57 37.34 10.43 17.07 21.65 19.87 28.97 13.01 19.50 19.19 129.98 213.66 131.64 99.34 34.46 109.54 72.77 16.21 9.10 27.09 29.37 46.37 18.44 22 E4_Da KnownBoundary 0 10.22 102.61 12.77 26.54 28.10 15.62 35.77 20.78 41.78 22.86 113.45 228.97 113.30 111.48 69.84 89.55 52.17 8.17 9.60 23.78 23.48 56.89 15.45 23 E4a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4b ExonRegion 0 24.47 90.92 14.23 25.19 47.52 28.59 38.29 23.74 25.18 27.26 126.10 309.84 230.73 77.93 48.67 90.52 72.86 6.58 4.80 32.45 14.88 82.74 16.66 25 E4_Ab KnownBoundary 0 37.71 60.58 27.23 24.34 31.32 57.81 24.91 26.90 25.61 38.25 138.35 391.03 324.33 92.94 74.66 139.71 115.29 3.86 24.66 49.15 11.86 71.03 28.08 26 ER4c ExonRegion 0 27.30 28.55 22.10 25.73 40.79 40.36 37.97 24.32 31.48 29.67 159.18 287.67 261.23 122.42 69.16 132.11 88.80 19.50 10.43 26.09 29.59 71.00 30.10 27 E4_Ac KnownBoundary 0 53.71 29.53 35.66 35.19 48.05 43.21 50.61 37.21 39.61 31.37 136.35 181.11 281.96 122.84 127.20 108.18 78.07 17.62 25.13 38.80 16.99 61.05 15.71 28 ER4d ExonRegion 0 39.53 60.56 35.22 33.74 67.69 50.11 54.84 37.69 34.32 29.32 171.82 227.21 311.82 128.75 80.08 135.54 78.59 20.79 8.54 31.87 22.50 71.39 29.76 29 E4_Db KnownBoundary 1 52.82 84.39 31.46 46.45 137.18 60.87 73.88 53.31 26.85 32.50 162.41 349.31 453.70 130.79 106.31 132.61 110.14 19.61 8.85 24.99 33.30 92.03 24.58 30 ER4e ExonRegion 0 42.07 62.06 42.84 40.79 65.08 49.94 46.16 37.81 39.76 32.41 159.35 207.88 202.63 126.46 103.56 164.43 99.30 35.02 14.22 36.54 51.83 82.36 35.22 31 E4c_E5a KnownJunction 0 101.05 73.54 51.59 30.87 114.52 57.41 62.49 12.90 34.14 34.84 132.03 144.35 131.16 113.78 176.65 120.40 76.30 21.64 9.04 21.80 64.99 58.48 11.10 32 ER5a ExonRegion 0 59.71 55.82 45.28 33.77 59.14 36.62 30.12 29.32 33.62 31.44 130.35 108.09 75.78 111.05 148.52 135.42 71.41 22.83 11.45 28.63 52.90 54.36 29.02 33 E5a_E6a KnownJunction 1 48.53 47.36 56.59 31.26 81.41 37.82 41.20 34.17 30.27 35.73 116.98 110.89 109.25 98.71 252.80 128.94 74.89 20.81 4.14 32.28 62.15 68.52 15.45 34 I5_AR10 ActiveIntronRegion 0 14.92 0.87 1.23 0.00 1.02 0.00 5.61 1.65 0.65 0.00 0.00 1.65 0.00 0.00 5.80 2.97 2.04 0.70 0.00 1.72 2.20 0.00 0.56 35 ER6a ExonRegion 0 73.77 60.79 63.49 38.09 88.33 59.24 55.50 36.43 26.10 29.02 155.01 131.71 107.75 103.49 169.04 148.10 98.29 15.41 4.99 28.84 51.73 68.45 21.72 36 E6a_E7a KnownJunction 0 67.86 49.79 53.43 44.45 113.58 93.18 54.32 24.11 21.33 25.52 187.99 108.64 131.81 100.48 153.16 171.24 89.11 17.53 3.48 26.33 36.33 84.99 39.35 37 ER7a ExonRegion 0 81.39 44.92 65.59 60.03 84.46 60.77 47.13 34.27 23.53 27.81 180.66 149.76 160.61 106.75 174.26 139.77 102.45 20.29 9.41 28.72 45.20 58.91 32.94 38 E7a_E8a KnownJunction 0 0.00 0.00 5.50 0.00 0.00 0.00 0.00 0.00 1.39 0.00 6.95 0.00 0.00 0.00 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E7a_E9a KnownJunction 0 97.57 56.63 74.98 74.85 71.39 64.11 26.90 35.73 36.17 25.57 166.15 218.62 172.55 134.62 194.57 198.84 96.77 8.33 22.87 45.00 22.18 71.89 40.72 40 ER8a ExonRegion 0 4.72 1.57 6.36 0.50 0.00 0.00 7.92 1.79 1.52 3.12 3.32 8.20 5.76 3.16 3.21 8.39 5.10 0.71 0.00 0.00 0.00 4.90 0.00 41 E8_Da KnownBoundary 0 6.08 2.50 4.38 2.70 0.00 0.00 6.27 2.22 3.33 10.48 2.58 12.90 6.82 2.35 0.00 11.36 14.03 2.20 0.00 0.00 0.00 5.27 0.00 42 ER8b ExonRegion 0 6.97 5.20 2.07 5.08 2.26 1.55 8.57 3.14 3.20 2.87 4.76 7.14 8.37 3.37 2.16 12.31 6.28 2.04 0.00 2.52 0.00 5.05 0.99 43 I8 Intron 0 16.57 4.60 3.12 5.31 8.19 4.92 8.78 4.06 2.16 2.80 4.03 10.46 11.42 3.55 4.08 5.40 2.49 1.45 0.64 3.21 2.69 3.60 2.28 44 I8_AR1 ActiveIntronRegion 0 11.78 3.65 1.31 2.01 5.05 2.63 5.94 4.39 2.31 2.61 5.03 12.62 12.43 3.66 3.60 7.21 5.33 1.73 1.99 3.06 4.16 2.24 4.74 45 I8_SR1 SilentIntronRegion 0 18.61 2.16 1.43 12.27 6.43 2.63 14.15 3.37 1.97 2.38 2.06 21.08 18.88 1.38 3.24 6.35 3.53 0.00 0.00 3.11 0.00 2.23 0.78 46 I8_AR4 ActiveIntronRegion 0 14.58 5.77 5.16 7.25 7.54 5.46 9.75 3.32 1.72 3.72 4.68 8.75 12.25 4.22 3.98 3.22 0.49 2.29 0.00 3.50 3.17 5.33 0.51 47 I8_SR3 SilentIntronRegion 0 23.19 4.35 2.72 3.97 12.06 6.38 7.25 4.31 3.09 2.14 3.67 6.96 7.94 4.09 3.86 6.32 1.85 1.28 0.59 3.04 2.78 4.60 2.70 48 I8_AR5 ActiveIntronRegion 0 30.45 8.49 6.55 5.67 17.00 11.45 15.20 7.11 2.57 4.20 3.02 14.92 12.56 2.91 10.58 8.76 2.11 0.45 0.00 4.02 0.00 1.76 2.65 49 E9_Aa NovelBoundary 0 39.64 9.80 8.28 6.16 14.77 2.90 6.36 8.83 5.12 3.36 2.68 0.00 0.00 12.60 15.08 0.00 4.77 0.00 0.00 3.00 0.00 9.37 0.00 50 ER9a ExonRegion 0 103.13 51.61 52.82 62.08 109.38 50.48 49.95 57.76 30.29 30.46 106.72 206.35 122.49 88.71 161.89 89.73 50.65 10.20 7.68 19.99 19.49 72.16 18.78 51 ER9b ExonRegion 0 8.47 6.10 2.45 1.36 10.70 0.00 9.27 1.73 2.47 0.00 7.73 8.66 4.69 8.12 2.90 11.89 0.00 0.00 3.19 0.00 0.00 0.00 2.94 52 ER9c ExonRegion 0 5.03 4.07 0.77 0.85 1.00 0.00 4.63 0.86 1.54 0.00 2.90 3.25 3.52 3.25 2.54 7.80 0.00 0.00 0.80 0.00 0.00 0.00 0.37