Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 OXNAD1 Gene 0 47.84 21.25 12.39 15.98 35.26 18.37 27.72 22.68 16.71 10.51 41.07 43.25 38.54 38.83 37.26 35.92 40.05 29.15 22.88 33.73 12.78 11.69 11.32 2 285083 Transcript 0 8.34 8.49 2.21 4.33 8.21 6.59 10.37 6.68 6.18 2.29 8.90 11.05 11.01 10.59 8.71 9.12 16.61 13.31 6.47 12.47 2.81 2.31 3.67 3 442255 Transcript 0 4.58 3.57 5.42 3.82 9.94 7.23 5.46 5.27 2.61 6.55 4.35 10.90 6.67 6.15 8.93 9.10 5.56 7.28 8.93 9.38 2.02 1.37 3.29 4 435829 Transcript 0 1.12 11.86 1.30 2.42 0.16 0.16 6.71 2.44 0.36 5.96 28.23 6.72 6.14 19.48 8.88 27.86 12.86 4.05 1.41 3.78 3.78 6.98 5.63 5 486267 Transcript 0 0.87 1.64 1.95 2.78 3.26 0.00 3.45 0.66 0.34 1.41 0.00 1.47 4.54 0.55 1.19 4.43 2.85 7.70 3.93 2.93 0.00 0.00 2.42 6 452581 Transcript 0 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 4.99 0.00 0.00 0.00 7 449564 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.24 1.36 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 1.50 0.00 0.00 4.87 6.45 0.66 9.54 1.64 0.35 0.00 0.49 0.00 0.00 9 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.38 1.94 0.00 0.00 0.00 2.21 0.00 0.00 4.71 0.00 7.18 9.35 4.52 0.00 0.00 0.00 5.45 0.00 10 E1_Ae KnownBoundary 0 16.00 11.18 7.45 0.00 12.99 18.85 14.09 1.97 3.36 0.00 21.48 0.00 0.00 6.89 4.45 10.85 16.55 16.91 15.62 16.11 0.00 8.02 3.93 11 ER1b ExonRegion 0 9.17 6.78 0.82 0.00 0.00 4.28 6.62 0.00 0.00 0.00 14.82 0.00 0.00 16.24 21.28 12.88 23.11 7.39 3.19 4.26 6.61 4.86 2.94 12 ER1c ExonRegion 1 24.72 18.02 6.96 0.68 4.62 21.34 19.20 1.73 2.47 0.78 34.88 0.00 0.00 31.60 29.01 30.26 40.06 17.72 13.90 17.89 10.32 15.06 8.81 13 ER1d ExonRegion 1 52.91 48.81 19.61 4.09 21.41 67.85 41.04 5.19 6.18 5.73 77.32 0.00 0.00 55.22 66.73 71.33 59.42 46.19 44.60 53.19 19.83 35.42 20.56 14 ER1e ExonRegion 1 18.70 16.27 20.78 8.31 6.79 16.83 12.06 11.06 8.83 9.07 62.04 7.48 4.38 43.96 55.24 64.39 53.91 44.92 39.28 51.85 28.85 27.13 20.15 15 E1a_E2a KnownJunction 1 17.19 9.47 14.96 11.19 4.33 22.54 11.79 7.19 6.54 10.91 75.44 44.41 0.00 38.44 60.94 45.54 81.16 41.45 17.98 39.31 28.85 10.72 23.73 16 ER2a ExonRegion 0 15.85 33.58 19.89 25.42 10.88 49.43 35.59 23.06 11.55 18.18 105.82 40.44 35.14 72.89 83.98 74.40 80.50 50.62 36.29 63.56 38.96 19.15 21.61 17 E2a_E3a KnownJunction 0 0.00 11.51 0.00 1.47 0.00 0.00 5.79 0.00 0.00 6.39 27.59 6.30 6.49 16.89 4.45 28.45 7.67 2.11 0.00 2.56 3.15 5.76 4.35 18 E2a_E3b KnownJunction 0 44.53 49.20 25.28 39.09 7.89 10.39 26.41 21.48 13.74 25.33 75.23 41.86 21.59 77.93 80.47 77.84 126.51 63.42 7.91 59.89 35.09 19.47 33.55 19 E3_Ab NovelBoundary 0 3.56 9.14 4.14 1.63 0.00 0.00 12.32 6.70 0.00 1.32 19.37 0.00 6.82 14.30 4.45 15.21 12.16 0.00 3.86 2.81 0.00 5.20 3.24 20 ER3a ExonRegion 0 2.24 12.20 2.59 3.37 0.31 0.32 7.63 4.88 0.73 5.53 28.88 7.13 5.79 22.07 13.31 27.27 18.06 5.98 2.81 5.01 4.41 8.21 6.91 21 ER3b ExonRegion 0 28.02 28.29 25.63 30.59 18.11 10.96 20.68 27.07 11.90 26.93 98.07 63.02 45.04 94.38 84.30 104.71 83.54 56.03 44.60 62.12 41.73 26.54 32.82 22 E3_Da KnownBoundary 0 0.00 0.00 5.88 3.53 0.00 0.00 2.21 2.46 1.79 0.00 0.00 0.00 0.00 0.00 0.00 4.10 9.54 6.26 0.00 3.13 0.00 0.00 0.00 23 E3a_E4a KnownJunction 0 54.68 34.14 18.75 17.91 35.31 33.45 23.01 18.57 4.98 31.99 98.08 56.12 63.96 97.36 72.19 95.27 95.00 36.48 56.85 38.03 33.98 22.72 32.44 24 E3a_E6a KnownJunction 0 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 4.99 0.00 0.00 0.00 25 ER3c ExonRegion 0 0.87 1.64 1.95 2.78 3.26 0.00 3.45 0.66 0.34 1.41 0.00 1.47 4.54 0.55 1.19 4.43 2.85 7.70 3.93 2.93 0.00 0.00 2.42 26 ER4a ExonRegion 0 28.28 26.34 18.07 13.95 18.14 18.74 27.66 17.66 7.84 18.73 93.93 77.19 52.91 114.42 71.31 83.50 86.39 43.48 38.77 35.67 45.76 29.69 18.63 27 E4_Da NovelBoundary 1 0.00 2.70 2.96 4.96 3.48 5.79 8.30 5.67 5.32 1.26 2.21 6.00 26.95 7.42 0.00 3.42 4.77 7.25 4.05 0.00 3.15 0.00 4.35 28 E4a_E5a KnownJunction 0 3.04 0.00 2.42 2.03 3.14 0.00 1.77 6.41 2.75 4.27 4.74 6.30 6.66 2.53 5.19 0.00 8.32 9.29 0.00 3.13 0.00 0.00 0.00 29 E4a_E6a KnownJunction 1 13.63 11.77 15.55 10.49 12.99 22.32 20.40 5.96 11.17 6.69 67.02 95.13 20.45 85.11 60.45 77.76 57.41 37.27 22.12 38.48 34.35 31.23 14.00 30 E5_Aa NovelBoundary 1 13.56 21.58 6.98 5.19 3.14 2.78 23.23 6.70 1.79 0.00 2.26 31.81 27.76 2.47 0.00 12.39 7.57 14.14 26.07 30.10 0.00 2.76 20.83 31 ER5a ExonRegion 1 6.94 4.14 9.08 7.42 18.37 9.59 14.62 7.59 5.07 8.25 5.74 20.08 6.54 8.85 10.21 8.35 8.35 7.84 13.80 18.80 3.71 0.99 1.41 32 E5_Da NovelBoundary 0 0.00 0.00 8.19 1.90 0.00 0.00 6.05 3.53 3.36 1.58 2.26 0.00 6.49 0.00 0.00 3.42 4.68 1.74 12.61 24.42 0.00 0.00 11.87 33 E5a_E6a KnownJunction 0 3.78 6.58 4.76 2.00 8.32 12.10 0.00 1.81 0.00 7.15 2.58 6.30 6.82 7.06 11.37 18.97 0.00 4.73 12.99 6.20 2.35 3.12 8.45 34 E6_Aa NovelBoundary 0 44.30 2.89 2.81 3.66 26.91 2.50 17.71 4.11 7.15 0.00 4.26 0.00 6.33 0.00 0.00 4.36 0.00 11.69 13.08 20.52 8.46 0.00 3.59 35 E6_Ab NovelBoundary 0 120.10 16.84 3.93 9.26 34.38 11.81 21.86 14.09 9.37 15.04 15.64 19.36 0.00 48.50 71.57 17.86 30.57 26.94 16.85 30.49 9.95 19.29 14.08 36 ER6a ExonRegion 1 135.62 22.21 15.93 15.94 36.43 27.93 26.28 17.28 11.69 16.23 68.84 88.59 20.56 97.95 87.48 83.22 63.99 40.22 35.28 46.81 32.21 30.77 28.91 37 ER6b ExonRegion 1 286.07 43.29 18.72 34.25 75.09 25.42 52.07 31.92 21.68 26.18 80.52 112.24 33.53 100.40 87.10 94.41 85.75 41.08 37.14 51.90 35.02 21.52 22.12 38 E6a_E7a KnownJunction 1 68.09 52.95 31.93 25.87 47.45 22.88 58.91 36.27 22.68 18.21 99.66 125.14 26.78 142.15 67.99 106.30 71.72 50.90 50.92 65.83 41.14 16.10 19.46 39 ER7a ExonRegion 0 97.02 48.19 29.07 41.85 82.10 28.42 49.74 48.02 33.49 23.04 117.74 92.72 88.68 123.72 100.52 102.10 87.31 71.92 61.94 61.03 37.29 26.28 23.82 40 E7a_E8a KnownJunction 0 117.80 68.08 46.89 47.75 100.68 50.14 38.64 62.27 41.23 23.16 80.07 79.98 65.74 117.31 92.59 89.46 50.30 55.84 32.75 78.87 22.86 19.66 35.34 41 E8_Aa NovelBoundary 0 3.56 0.00 5.09 1.73 0.00 4.77 7.55 7.27 8.97 8.97 5.32 0.00 6.82 2.41 0.00 17.09 4.68 6.84 0.00 8.05 2.78 0.00 0.00 42 ER8a ExonRegion 0 41.96 45.44 33.93 52.24 104.25 35.55 41.17 53.88 45.08 27.22 84.64 82.34 56.01 95.82 72.03 62.07 35.93 44.91 42.39 62.93 23.69 13.66 17.73 43 E8_Da KnownBoundary 0 58.08 48.74 28.77 49.11 203.74 44.92 62.67 54.05 36.46 15.98 76.49 89.13 61.85 108.48 128.56 73.14 62.27 40.25 64.85 45.51 36.94 9.37 4.35 44 E8_Db KnownBoundary 0 78.75 31.64 18.51 26.14 153.65 49.12 94.02 20.54 44.65 20.79 101.24 40.06 61.36 64.22 105.94 38.28 75.55 43.11 16.19 30.74 33.67 19.72 12.21 45 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER8b ExonRegion 0 71.37 41.16 27.30 47.76 194.37 53.91 80.34 46.60 54.20 25.92 108.09 71.35 67.16 96.02 99.22 71.09 79.62 57.80 42.94 45.19 45.13 16.67 11.86 47 ER8c ExonRegion 1 132.53 45.01 30.47 44.07 131.68 39.75 92.03 74.01 50.13 23.48 109.23 58.65 126.41 106.59 96.33 104.34 71.44 65.33 44.71 51.06 34.47 17.98 18.63 48 E8_Dc KnownBoundary 0 282.72 46.70 38.82 63.96 121.22 45.71 86.21 105.89 55.15 24.26 111.82 99.63 127.26 139.09 106.56 95.62 71.25 78.43 50.35 42.25 41.08 20.21 39.10 49 ER8d ExonRegion 0 355.34 45.28 38.93 48.80 203.32 35.76 97.97 103.22 64.54 41.23 133.18 109.77 120.45 122.46 157.59 100.73 103.45 66.92 86.90 62.66 29.86 32.88 39.75 50 E8_Dd NovelBoundary 0 17.34 0.00 3.16 4.26 0.00 10.56 17.18 15.48 8.59 1.45 7.00 6.60 6.82 2.24 0.00 16.49 4.02 6.43 4.80 3.07 0.00 3.12 0.00 51 E8d_E9a KnownJunction 0 193.44 22.43 29.54 53.71 166.30 40.32 83.47 115.95 49.51 42.47 130.40 67.37 106.81 85.06 119.04 61.95 64.52 37.47 59.01 62.00 26.26 27.13 20.66 52 I8 Intron 0 11.92 1.79 6.81 3.31 5.26 12.19 9.71 9.43 5.37 1.51 8.52 7.19 10.46 6.08 2.08 6.85 9.18 5.17 1.73 5.77 4.03 1.27 1.00 53 I8_SR1 SilentIntronRegion 0 13.74 2.24 5.32 0.69 3.18 18.12 11.77 9.57 3.86 1.37 7.28 5.17 7.80 3.19 1.96 4.11 12.89 3.36 1.02 1.99 2.42 1.24 0.94 54 I8_AR1 ActiveIntronRegion 0 10.32 1.74 7.86 4.22 5.82 10.39 9.77 10.13 5.74 1.52 8.53 7.65 9.83 7.17 2.47 8.56 8.76 5.21 1.67 7.27 4.46 1.12 0.92 55 I8_AR2 ActiveIntronRegion 0 15.52 2.03 7.35 2.88 10.70 12.43 3.97 3.46 6.72 4.59 10.09 12.99 7.30 11.73 4.84 5.94 3.67 8.83 0.00 7.09 8.81 0.69 0.00 56 I8_SR2 SilentIntronRegion 0 17.23 1.35 4.08 3.16 5.50 11.74 6.73 6.43 6.04 1.37 10.78 7.81 19.07 4.93 0.03 2.91 5.85 7.85 3.53 4.51 4.19 2.24 1.63 57 E9_Aa NovelBoundary 0 10.37 2.43 11.15 2.06 7.56 17.83 17.14 9.20 7.55 5.56 17.58 12.00 19.97 4.83 0.00 4.36 18.61 6.38 12.89 9.27 5.31 0.00 8.71 58 ER9a ExonRegion 0 211.05 47.22 41.65 51.70 143.29 36.71 58.92 86.99 49.87 30.65 110.03 132.15 169.19 89.74 112.64 63.91 92.79 29.14 46.61 70.52 16.82 24.18 18.40 59 E9_Da NovelBoundary 0 3.78 0.00 3.13 2.76 0.00 10.39 23.05 4.72 2.92 1.02 12.85 0.00 0.00 2.47 0.00 0.00 12.81 6.67 11.48 0.00 0.00 5.45 0.00 60 E9a_E10a KnownJunction 1 225.08 37.76 21.85 36.53 82.94 42.48 84.62 78.90 41.64 27.67 60.07 208.57 96.75 84.76 89.62 51.87 70.13 19.57 30.59 66.41 8.28 30.00 27.49 61 I9_SR1 SilentIntronRegion 0 3.87 0.93 1.67 1.43 2.20 14.79 9.61 4.74 3.81 2.79 5.11 1.44 12.13 4.69 1.73 4.25 11.85 3.61 0.00 6.20 1.00 0.95 0.00 62 E10_Aa NovelBoundary 0 9.93 3.09 1.83 1.76 15.87 13.34 14.35 1.97 1.56 3.25 7.53 0.00 19.64 9.65 4.45 0.00 9.07 6.92 0.00 9.14 2.66 3.12 0.00 63 ER10a ExonRegion 0 166.23 28.01 27.97 34.54 98.43 35.66 60.60 58.64 36.88 20.51 74.72 133.95 107.51 64.59 78.19 42.42 82.66 18.51 41.41 56.73 7.59 28.34 11.52 64 E10_Da KnownBoundary 1 49.27 14.60 14.31 21.04 40.83 18.51 43.15 27.15 21.15 11.17 63.23 110.74 40.09 42.09 64.28 21.79 83.22 12.15 26.17 40.52 5.56 26.64 11.35 65 ER10b ExonRegion 1 30.55 21.85 10.33 9.79 32.59 16.33 20.76 15.79 13.22 7.21 20.02 70.73 51.05 22.43 28.69 8.67 21.81 6.60 7.99 15.88 1.51 10.70 4.15 66 E10_Db KnownBoundary 1 29.34 76.24 7.84 10.39 54.75 19.25 28.18 13.23 15.65 6.31 7.84 80.13 33.44 7.06 0.00 0.00 0.00 3.56 0.00 3.26 0.00 3.12 0.00 67 ER10c ExonRegion 0 16.45 15.62 4.42 8.65 16.42 13.19 20.30 13.36 12.36 4.58 16.29 22.10 22.03 16.31 10.97 17.58 23.69 24.97 12.59 24.94 5.13 4.61 7.33 68 IG18 Intergenic 0 69.10 11.49 9.86 20.96 43.36 12.53 36.42 27.93 12.85 5.45 10.79 21.51 23.21 10.50 10.55 17.42 25.59 16.29 15.01 14.30 4.80 3.36 6.28 69 IG18_SR1 SilentIntergenicRegion 0 14.10 7.37 2.89 4.92 14.90 8.60 16.48 6.99 6.31 2.60 4.95 20.04 24.86 7.59 2.99 7.06 10.83 4.32 10.30 12.28 2.05 1.87 0.34 70 IG18_AR1 ActiveIntergenicRegion 0 42.47 10.96 6.49 12.44 38.35 11.38 33.12 21.41 13.05 3.97 11.95 22.74 34.26 11.70 6.64 13.17 27.62 11.25 9.40 16.51 2.27 5.52 4.65 71 IG18_SR2 SilentIntergenicRegion 0 104.89 10.47 12.87 22.26 62.52 6.89 36.18 31.02 11.08 5.27 9.65 21.53 19.31 8.80 10.12 15.30 15.46 12.39 15.25 13.90 3.97 2.57 4.53 72 IG18_AR2 ActiveIntergenicRegion 0 86.91 11.12 14.95 31.75 44.39 11.63 32.06 40.20 16.89 6.87 12.39 20.19 14.27 11.70 15.85 26.69 30.93 37.54 23.01 15.44 7.31 3.00 8.21 73 IG18_SR3 SilentIntergenicRegion 0 44.62 5.86 9.07 21.16 30.20 6.05 29.40 28.70 13.98 8.64 10.21 7.17 12.35 13.65 17.59 24.17 30.26 26.12 24.84 10.76 7.79 1.70 13.35 74 IG18_AR3 ActiveIntergenicRegion 0 87.85 8.81 9.32 22.68 47.48 8.72 47.89 33.76 15.04 9.71 12.82 20.16 9.55 6.71 11.68 21.07 27.76 10.59 14.37 9.26 5.71 4.34 12.22 75 IG18_SR5 SilentIntergenicRegion 0 96.00 24.05 18.29 31.81 54.59 23.38 51.61 43.94 19.60 8.96 15.03 19.29 16.22 16.20 11.34 25.63 36.41 33.24 27.30 20.08 9.74 3.92 10.21 76 IG18_AR6 ActiveIntergenicRegion 0 92.12 7.28 10.03 25.54 61.54 20.22 56.79 23.15 16.02 11.20 12.41 21.53 19.13 13.55 10.46 18.93 42.74 28.20 16.09 8.68 12.47 4.77 3.09 77 IG18_AR7 ActiveIntergenicRegion 0 44.56 12.15 15.81 38.54 31.57 13.34 33.04 27.73 19.24 7.12 8.00 23.39 16.50 7.51 21.35 20.60 28.38 14.70 22.24 16.65 7.46 3.71 19.84 78 IG18_AR8 ActiveIntergenicRegion 0 60.17 7.55 8.23 34.85 45.87 31.17 47.47 24.94 16.76 5.73 9.11 37.11 17.42 11.60 20.31 14.01 45.74 26.40 13.20 15.20 0.63 6.25 9.65 79 IG18_AR9 ActiveIntergenicRegion 0 84.11 17.83 9.17 26.01 48.19 16.91 48.66 31.29 12.74 5.35 11.17 28.69 29.45 9.36 12.33 19.30 29.35 14.58 16.79 14.18 4.49 2.90 6.94 80 IG18_SR6 SilentIntergenicRegion 0 44.29 7.74 6.44 14.61 27.46 27.08 35.37 19.48 8.47 4.20 8.41 24.14 22.73 11.46 8.95 12.99 25.23 9.74 10.68 9.47 4.82 0.80 2.62 81 IG18_AR10 ActiveIntergenicRegion 0 36.33 10.17 8.58 33.84 20.51 4.89 32.22 27.08 10.91 3.06 11.60 18.76 37.52 3.79 15.96 5.94 27.51 14.78 4.25 12.06 0.73 2.08 5.87 82 IG18_SR7 SilentIntergenicRegion 0 27.55 8.13 6.04 32.97 15.54 2.27 23.44 27.53 12.11 1.40 9.61 16.93 24.43 15.76 10.48 12.60 36.85 9.62 3.76 9.84 4.37 1.71 1.62 83 IG18_AR11 ActiveIntergenicRegion 0 53.06 10.09 6.68 18.56 36.12 23.48 41.40 21.85 10.74 3.56 12.16 20.50 38.72 13.56 13.34 21.50 34.18 15.11 10.05 19.67 8.40 3.40 5.03