Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BHLHE40 Gene 0 99.70 20.43 393.43 44.27 71.06 78.24 40.48 249.51 207.38 54.72 597.09 62.49 352.99 278.38 212.34 8.18 116.01 14.92 14.48 4.75 61.48 367.51 555.44 2 256495 Transcript 0 62.15 17.62 237.87 36.87 42.83 59.73 30.94 162.12 147.21 36.77 498.42 45.29 245.00 228.18 195.23 7.27 107.09 10.22 10.64 3.12 38.49 280.08 365.62 3 457655 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 467610 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 460806 Transcript 0 5.84 0.00 35.42 9.87 33.29 9.81 17.74 21.29 22.77 9.37 40.47 4.42 17.72 20.70 12.70 0.00 5.98 0.12 0.70 0.00 0.30 24.12 20.25 6 ER1a ExonRegion 0 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.88 1.90 0.00 12.51 0.00 6.54 4.62 2.62 0.00 2.27 0.47 0.00 0.00 0.13 0.56 0.17 7 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 9.74 0.00 0.00 7.30 8.90 0.00 0.00 0.00 0.00 0.00 2.90 2.76 0.00 8 E1_Ac KnownBoundary 0 3.19 0.00 0.00 1.43 0.00 2.38 2.03 0.00 3.07 0.00 6.90 0.00 17.69 9.36 30.41 0.00 3.93 0.00 0.00 0.00 0.00 2.39 8.62 9 ER1b ExonRegion 0 2.12 0.00 0.00 0.71 0.00 1.10 0.85 0.00 0.64 0.00 10.90 0.00 0.38 10.78 16.13 0.00 2.38 0.00 0.00 0.00 2.20 4.92 6.11 10 ER1c ExonRegion 1 22.21 5.33 156.32 10.31 14.94 34.74 12.70 111.82 108.78 21.04 414.88 18.35 72.99 169.71 143.00 14.67 75.69 10.89 16.55 4.56 53.58 165.23 722.54 11 E1a_E2a KnownJunction 1 20.74 9.54 192.22 17.98 47.28 60.02 41.25 128.52 128.44 24.39 629.53 24.91 112.98 284.89 158.72 8.63 105.19 11.90 17.88 5.18 85.93 221.54 328.39 12 ER2a ExonRegion 0 26.46 16.09 271.21 38.86 36.70 91.43 37.07 167.68 198.38 35.55 611.21 51.64 237.25 358.84 184.64 11.85 121.14 14.02 15.20 1.79 75.18 321.99 423.21 13 E2_Da KnownBoundary 0 14.67 0.00 193.02 4.63 8.57 6.98 14.09 63.58 76.19 8.54 35.01 0.00 0.00 45.44 45.37 0.00 0.00 2.11 0.00 0.00 3.03 40.35 15.54 14 E2a_E2c KnownJunction 0 44.45 23.94 237.48 52.94 23.34 75.98 37.32 177.23 202.78 41.58 832.95 69.62 283.10 366.24 326.72 13.07 191.12 14.51 16.38 3.00 47.88 388.77 459.17 15 ER2b ExonRegion 0 12.40 0.00 183.12 4.75 5.11 2.25 4.57 55.23 63.29 13.61 48.79 0.90 6.37 29.32 29.62 0.75 6.68 1.73 2.42 0.00 4.46 25.57 22.31 16 E2_Ab KnownBoundary 0 14.00 0.00 220.16 5.59 0.00 2.38 17.80 73.44 71.64 12.79 48.06 0.00 6.82 40.61 14.34 0.00 16.74 1.70 0.00 0.00 8.09 21.62 27.40 17 ER2c ExonRegion 0 11.90 2.18 183.27 5.61 6.28 11.91 8.04 53.81 56.35 11.77 61.63 3.89 12.03 27.63 29.81 1.16 8.66 1.29 0.28 0.03 2.71 24.13 20.26 18 E2_Ac KnownBoundary 0 19.34 2.57 181.48 5.19 12.56 30.27 5.43 55.04 37.99 6.85 46.38 13.80 13.47 21.01 45.12 4.36 4.11 0.00 0.00 0.00 5.37 20.64 26.72 19 ER2d ExonRegion 0 72.22 14.45 452.44 41.16 21.69 78.00 31.90 239.08 271.03 51.67 925.03 100.04 361.19 396.96 297.24 14.66 205.93 17.69 29.01 4.03 103.69 447.10 552.68 20 E2_Db KnownBoundary 0 86.90 14.14 451.49 32.40 28.44 124.36 23.98 237.57 255.32 53.78 932.13 97.23 494.94 529.35 296.68 8.20 222.53 30.26 25.98 0.00 126.71 415.10 641.08 21 ER2e ExonRegion 0 68.06 12.39 404.14 42.63 14.97 87.22 22.96 246.47 251.15 53.22 986.26 121.77 438.52 530.48 250.32 9.01 211.46 26.39 20.61 3.79 89.73 428.36 614.31 22 E2_Dc NovelBoundary 0 13.34 0.00 38.05 5.46 15.62 5.79 19.17 26.62 23.29 1.67 27.80 0.00 26.13 30.20 24.97 0.00 0.00 0.00 0.00 0.00 0.00 10.72 4.01 23 E2c_E3a KnownJunction 1 103.35 19.34 452.35 53.71 4.07 72.69 36.61 305.30 285.07 63.21 1079.75 157.85 406.30 569.08 257.25 12.65 230.29 27.48 22.21 8.37 74.50 462.01 683.76 24 E2c_E4a NovelJunction 0 10.89 0.00 121.96 4.03 3.99 0.00 0.00 36.27 46.61 2.55 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.63 19.97 25 ER3a ExonRegion 0 95.98 21.34 529.39 71.65 63.64 64.72 37.75 356.10 323.04 77.12 1297.61 143.54 540.98 531.87 305.36 12.03 253.00 28.98 22.86 6.79 105.94 583.99 750.26 26 E3_Da KnownBoundary 0 10.15 0.00 51.27 10.72 23.85 13.34 10.55 33.76 40.45 9.51 40.64 5.55 13.31 18.31 13.97 0.00 4.68 1.53 4.42 0.00 0.00 34.96 33.89 27 E3a_E4a KnownJunction 0 179.96 27.43 540.61 69.26 33.79 83.82 75.34 343.87 292.21 62.45 1094.49 160.55 633.08 524.52 316.21 21.19 205.14 40.09 21.18 0.00 91.25 557.84 819.83 28 ER3b ExonRegion 0 5.84 0.00 35.42 9.87 33.29 9.81 17.74 21.29 22.77 9.37 40.47 4.42 17.72 20.70 12.70 0.00 5.98 0.12 0.70 0.00 0.30 24.12 20.25 29 E3_Db NovelBoundary 0 31.71 0.00 27.44 15.82 40.66 14.14 13.03 38.28 41.72 14.67 35.59 6.75 20.29 12.01 4.45 0.00 12.62 0.00 0.00 3.26 2.59 23.33 14.08 30 I3 Intron 0 29.95 1.37 37.13 10.99 28.04 6.73 8.89 34.96 42.85 12.88 34.35 3.94 22.06 19.82 15.46 0.43 6.54 0.89 0.31 0.62 2.45 32.60 12.48 31 I3_AR1 ActiveIntronRegion 0 29.52 1.34 42.00 12.62 31.50 7.48 10.81 37.45 51.65 15.14 38.45 3.92 21.05 21.43 15.32 0.49 8.68 1.34 0.26 0.88 2.58 37.17 17.49 32 I3_AR2 ActiveIntronRegion 0 29.29 1.19 39.93 13.77 27.00 10.73 7.27 45.83 49.45 13.89 33.86 4.33 24.53 19.79 19.27 0.00 3.91 1.15 1.21 1.25 3.22 32.76 12.15 33 I3_SR1 SilentIntronRegion 0 31.08 1.65 32.41 9.33 24.62 4.16 5.69 32.63 29.65 10.82 29.70 5.27 24.40 15.89 14.16 0.00 4.01 0.01 0.23 0.00 1.90 27.38 3.25 34 I3_AR3 ActiveIntronRegion 0 31.00 1.10 15.85 2.20 15.97 4.97 6.46 15.37 14.98 2.78 20.97 0.00 20.56 20.22 16.67 1.61 1.79 0.00 0.00 0.00 2.39 16.96 4.78 35 E4_Aa NovelBoundary 0 119.58 10.98 68.06 7.33 58.49 9.43 16.56 44.98 29.54 15.23 43.96 13.35 40.74 32.32 28.80 0.00 8.60 0.00 0.00 0.00 0.00 14.51 0.00 36 ER4a ExonRegion 0 133.00 26.93 670.63 67.60 78.47 116.07 53.26 426.70 387.69 90.32 1107.19 146.30 652.00 491.95 334.45 9.66 207.06 31.82 23.90 4.86 110.17 628.90 851.07 37 E4_Da KnownBoundary 0 445.71 33.88 910.58 77.18 146.10 213.85 78.26 712.31 683.07 171.06 2127.17 112.54 858.22 570.55 495.58 21.96 367.93 41.58 36.05 10.55 184.28 1451.36 1987.77 38 ER4b ExonRegion 0 141.92 28.91 476.14 57.68 105.16 103.21 55.51 308.24 236.94 68.71 649.80 66.24 445.35 313.69 256.35 8.74 127.89 15.67 15.53 6.37 67.45 450.90 637.51