Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC6A6 Gene 0 42.80 41.49 32.36 45.21 25.34 36.03 27.49 34.74 27.57 20.34 77.16 23.43 26.45 82.57 27.13 43.01 72.41 98.00 45.99 94.41 92.83 259.40 260.72 2 490683 Transcript 0 0.00 1.06 2.86 2.38 0.23 0.32 0.81 1.35 0.00 0.30 0.34 1.68 0.00 0.35 0.18 0.52 1.44 2.60 0.83 2.04 0.38 0.00 3.32 3 427436 Transcript 1 15.46 14.92 6.17 30.36 14.35 13.71 16.29 14.31 8.71 9.96 31.02 15.80 17.99 28.60 2.96 13.04 15.63 25.86 14.52 29.58 28.07 41.95 46.12 4 458124 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 454876 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 360861 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 451687 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 416216 Transcript 0 3.02 6.51 2.93 3.82 3.67 1.44 4.48 3.70 2.46 2.95 15.22 6.56 2.65 12.65 9.04 6.93 5.46 12.30 6.77 11.50 12.45 7.25 14.53 9 428884 Transcript 0 0.60 0.58 0.26 0.81 0.19 0.20 0.86 1.21 0.13 0.65 0.00 0.13 0.00 0.06 0.27 0.60 0.59 1.07 0.82 0.95 0.63 0.00 0.85 10 435095 Transcript 0 2.78 4.64 0.00 1.88 1.06 1.93 0.52 1.32 1.25 0.00 6.00 2.40 3.52 4.53 0.89 1.93 0.45 1.36 0.02 0.81 0.56 0.55 2.83 11 484191 Transcript 0 0.00 0.00 3.67 1.90 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 2.59 0.00 0.00 12 452775 Transcript 0 0.00 0.02 0.00 0.00 0.58 0.40 1.43 2.07 0.40 0.37 3.61 4.99 1.59 4.33 5.58 1.93 5.69 0.60 1.98 1.38 0.95 0.00 0.63 13 452151 Transcript 0 0.00 0.00 0.00 4.10 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.01 14 ER1a ExonRegion 0 0.61 3.48 0.87 1.49 0.00 3.73 2.35 2.12 2.35 0.00 11.85 0.00 0.00 9.12 3.56 10.26 5.00 14.25 11.41 6.86 6.18 2.22 26.90 15 E1_Ac KnownBoundary 0 0.00 0.00 1.80 0.00 0.00 2.10 4.42 0.00 0.00 1.18 10.00 0.00 0.00 9.42 0.00 4.27 4.68 7.30 18.54 5.62 3.09 0.00 21.26 16 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1_Ae KnownBoundary 0 0.00 0.00 1.83 2.06 0.00 0.00 2.25 2.38 1.77 0.00 5.32 0.00 0.00 4.94 5.81 12.48 23.47 19.57 17.88 3.26 6.05 8.76 60.01 18 ER1b ExonRegion 1 2.72 8.13 4.03 3.12 0.00 9.17 8.32 5.68 5.03 0.25 30.10 0.00 0.00 22.16 4.56 34.18 29.71 47.65 42.77 19.30 19.52 18.16 117.05 19 E1_Af KnownBoundary 1 34.30 6.38 8.37 5.59 16.98 26.86 39.66 9.49 5.06 4.49 32.85 0.00 0.00 139.62 18.30 56.14 46.56 114.78 148.43 63.28 47.82 103.55 357.84 20 ER1c ExonRegion 1 6.35 8.13 6.13 5.45 5.35 14.67 15.89 6.91 6.18 2.29 38.66 0.00 0.00 42.23 5.80 44.58 39.61 66.52 76.45 27.66 28.65 41.67 185.01 21 ER1d ExonRegion 1 7.94 8.13 6.13 5.45 5.35 14.67 17.21 7.78 6.18 2.29 39.14 0.00 0.00 44.66 5.80 47.55 45.39 67.90 83.62 29.79 30.85 46.88 193.82 22 ER1e ExonRegion 1 14.82 10.34 6.55 6.52 5.35 18.98 23.83 10.90 6.66 3.44 44.04 0.00 0.00 84.24 12.36 63.58 52.10 103.23 122.98 50.97 51.26 70.93 300.43 23 ER1f ExonRegion 0 5.20 1.59 2.21 1.75 1.27 5.40 6.79 3.14 2.53 2.70 13.62 0.90 0.95 29.94 5.06 16.12 15.64 43.87 42.41 20.79 24.53 31.37 111.62 24 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 25 E1a_E3a KnownJunction 0 2.89 0.00 6.00 5.46 0.00 4.83 0.00 4.15 11.08 7.01 33.75 0.00 0.00 126.73 22.00 43.66 33.75 86.93 128.76 43.72 76.85 170.41 295.70 26 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER1g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER2a ExonRegion 0 0.00 2.12 5.72 3.16 0.47 0.64 1.61 2.69 0.00 0.59 0.67 3.37 0.00 0.70 0.36 1.03 2.87 2.88 1.66 4.07 0.77 0.00 6.65 29 ER3a ExonRegion 1 2.87 0.48 8.46 4.80 1.59 10.96 2.58 8.93 7.38 9.94 53.80 6.39 0.00 81.98 16.44 46.63 47.08 88.65 66.36 72.59 75.50 85.87 239.06 30 E3a_E5a KnownJunction 1 7.11 5.92 8.19 5.79 8.40 18.40 6.27 14.01 14.15 9.24 78.02 11.25 0.00 61.16 8.90 58.96 58.06 137.25 109.18 110.19 80.68 78.01 337.87 31 E3a_E5b KnownJunction 0 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.37 0.00 0.00 2.58 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 6.01 3.15 7.47 0.00 32 E3a_E7a KnownJunction 0 0.00 0.00 3.67 1.90 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 2.59 0.00 0.00 33 ER4a ExonRegion 0 0.00 0.03 0.00 0.00 1.16 0.79 2.86 1.60 0.80 0.74 4.54 3.67 3.18 6.19 11.16 3.85 3.72 1.19 3.97 2.76 1.90 0.00 1.27 34 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 2.68 6.30 0.00 2.47 0.00 0.00 7.67 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5a ExonRegion 0 4.23 5.29 9.80 6.00 7.49 18.34 4.77 14.17 16.30 11.47 78.86 12.99 11.26 59.77 17.99 43.99 51.49 127.13 79.63 109.79 86.83 83.76 273.11 36 ER5b ExonRegion 0 10.73 17.12 9.28 15.44 6.99 19.44 14.18 13.75 25.43 13.70 78.22 13.17 15.99 89.12 26.95 33.41 86.08 116.92 45.52 112.27 127.60 204.67 212.81 37 E5_Da KnownBoundary 0 3.56 0.00 0.00 1.80 0.00 0.00 5.79 1.97 0.00 1.56 0.00 0.00 0.00 4.94 0.00 4.02 4.68 2.03 4.24 3.20 0.00 0.00 0.00 38 E5a_E6a KnownJunction 0 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 7.42 0.00 0.00 4.94 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 39 E5a_E7a KnownJunction 0 26.15 18.09 13.93 30.07 7.56 16.41 18.15 8.67 23.55 12.06 120.98 12.30 19.97 165.52 54.27 59.22 126.41 155.70 65.79 176.28 174.71 357.05 297.83 40 ER5c ExonRegion 0 1.80 1.73 0.78 2.43 0.57 0.59 2.59 3.63 0.39 1.94 0.00 0.38 0.00 0.19 0.82 1.80 1.76 3.20 2.47 2.85 1.88 0.01 2.56 41 ER6a ExonRegion 0 8.35 5.63 0.00 3.72 3.17 5.80 1.57 3.95 1.22 0.00 3.22 0.91 2.76 4.07 2.68 2.53 1.36 1.80 0.05 2.42 1.69 1.66 4.14 42 E6a_E7a KnownJunction 0 0.00 5.79 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 7.37 6.30 7.79 4.59 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 4.35 43 ER7a ExonRegion 0 19.49 14.17 18.78 27.69 4.09 21.02 21.40 21.26 29.85 23.51 130.30 21.95 24.15 137.34 36.76 73.17 136.33 205.84 79.92 160.98 134.07 280.28 373.63 44 E7_Da KnownBoundary 0 10.96 12.23 22.83 22.08 12.22 16.64 29.59 42.06 35.30 40.64 111.45 44.11 31.17 152.81 42.40 113.65 139.41 296.47 85.27 158.90 169.83 333.29 550.17 45 ER7b ExonRegion 0 11.85 13.36 23.74 29.98 9.40 25.88 21.07 33.63 36.10 29.46 114.32 34.02 56.15 134.52 32.49 99.86 133.07 241.90 127.78 130.21 149.92 495.46 603.02 46 E7b_E8a KnownJunction 0 17.71 30.39 25.63 38.96 11.80 41.68 18.33 31.26 44.13 27.67 102.50 30.91 91.23 111.84 26.21 103.73 142.78 251.54 172.90 133.78 127.26 660.71 649.27 47 ER8a ExonRegion 0 15.55 20.84 24.35 28.06 8.93 25.54 17.23 29.16 39.38 25.59 151.95 35.10 50.35 129.45 45.78 75.91 140.49 217.32 96.08 179.24 177.30 363.27 456.03 48 E8_Da KnownBoundary 0 6.00 8.62 8.22 6.46 0.00 5.28 4.15 2.55 1.42 1.67 25.90 0.00 0.00 9.36 19.78 0.00 0.00 24.17 13.18 24.35 23.17 8.88 15.79 49 E8a_E9a KnownJunction 0 6.67 12.43 25.78 18.51 3.57 32.82 26.32 35.41 31.57 18.05 113.50 38.71 45.61 96.95 40.92 23.67 83.50 106.37 33.22 188.81 157.90 231.34 341.45 50 ER8b ExonRegion 0 3.02 6.51 2.93 3.82 3.67 1.44 4.48 3.70 2.46 2.95 15.22 6.56 2.65 12.65 9.04 6.93 5.46 12.30 6.77 11.50 12.45 7.25 14.53 51 ER9a ExonRegion 0 13.94 10.75 20.86 25.08 5.11 23.84 17.23 22.87 27.38 20.60 103.82 25.81 52.69 89.87 25.70 39.56 93.24 128.96 46.95 142.66 167.54 228.00 344.69 52 E9_Da KnownBoundary 1 10.15 8.68 16.94 20.48 4.33 35.89 12.72 9.86 21.90 14.02 108.82 18.46 47.89 109.48 36.34 7.78 94.90 101.85 55.25 167.59 154.38 230.18 315.25 53 ER9b ExonRegion 0 4.72 14.70 15.82 26.40 5.89 23.84 11.99 19.51 25.80 14.22 128.40 26.47 33.77 124.45 32.83 38.81 114.68 121.00 54.33 145.71 135.87 232.28 305.83 54 E9_Db NovelBoundary 0 3.19 14.60 7.72 22.41 3.82 5.28 6.62 17.17 19.42 8.33 110.03 36.76 27.27 99.59 23.86 54.09 102.85 72.09 59.67 109.81 111.08 234.71 271.97 55 E9c_E10a KnownJunction 1 6.08 6.18 12.86 18.65 7.30 11.75 14.09 19.67 26.04 12.81 95.97 6.30 40.26 125.02 57.36 29.39 76.02 71.13 62.21 130.77 111.01 270.41 297.41 56 ER9c ExonRegion 0 3.83 8.62 13.25 20.12 4.59 8.30 9.71 18.68 24.53 11.03 116.99 19.17 39.08 136.27 47.11 45.01 101.23 89.04 56.88 128.47 119.21 239.21 287.37 57 ER10a ExonRegion 0 11.40 14.60 14.19 18.16 12.01 19.60 12.14 17.80 21.53 10.69 76.41 12.92 21.47 102.14 23.10 40.00 69.27 99.19 33.03 105.30 107.88 179.89 266.84 58 E10a_E11a KnownJunction 0 2.96 9.14 8.19 15.55 20.12 35.15 18.68 10.84 20.20 9.24 87.29 12.45 6.49 131.67 30.16 29.14 63.58 128.42 49.98 122.47 110.40 222.16 278.63 59 ER11a ExonRegion 0 4.97 8.94 13.93 18.50 10.88 17.35 13.32 13.50 24.46 12.62 84.75 26.48 32.69 110.55 27.26 39.07 79.89 116.99 34.58 105.46 105.54 259.36 348.75 60 E11a_E12a KnownJunction 0 0.00 27.30 14.01 9.66 8.66 18.74 6.36 18.07 17.71 4.57 90.60 20.26 20.13 77.70 23.36 66.22 61.62 100.52 47.72 102.84 117.93 290.25 368.68 61 E11a_E13a KnownJunction 0 0.00 8.62 3.13 14.45 0.00 5.74 6.27 6.53 0.00 5.94 14.64 0.00 33.60 32.02 12.36 4.02 9.16 18.86 27.58 9.01 15.94 3.12 3.16 62 ER12a ExonRegion 0 4.94 10.72 12.87 10.26 5.42 18.00 8.29 16.14 16.16 8.38 74.01 18.25 20.26 88.17 31.70 43.58 64.09 115.67 37.38 113.21 104.05 261.46 317.93 63 E12a_E13a KnownJunction 1 5.63 6.51 16.35 14.85 12.31 10.28 3.84 12.40 16.03 4.92 55.07 17.11 22.24 83.94 18.54 7.69 87.80 126.02 20.52 121.95 76.79 277.33 308.50 64 I12_AR2 ActiveIntronRegion 0 3.44 2.03 4.90 2.73 0.00 9.63 2.65 4.32 7.10 2.29 11.60 0.00 0.00 12.79 5.80 2.97 9.90 7.39 8.36 21.54 25.34 13.28 13.21 65 I12_AR3 ActiveIntronRegion 1 2.12 2.03 8.58 2.73 0.00 9.29 2.65 5.07 7.99 4.28 16.88 0.00 0.00 13.86 10.25 3.37 9.24 8.62 4.25 20.99 29.68 9.31 7.64 66 I12_AR4 ActiveIntronRegion 0 1.62 5.90 4.95 3.15 0.00 2.80 2.62 7.39 7.43 3.44 10.23 2.97 3.77 15.95 9.84 5.24 17.15 18.91 1.87 25.11 21.13 10.66 18.71 67 I12_AR5 ActiveIntronRegion 0 3.67 4.51 2.54 5.51 0.87 2.11 4.77 7.96 7.54 2.89 5.84 1.86 15.15 8.87 4.20 6.93 17.06 23.66 6.60 29.10 22.55 13.07 30.81 68 ER13a ExonRegion 0 9.30 13.65 16.74 24.89 7.60 23.26 16.48 21.97 20.15 10.59 110.23 25.52 40.98 119.37 26.95 32.54 84.17 135.76 46.94 134.27 108.91 320.64 373.88 69 E13_Ab KnownBoundary 0 16.82 6.25 18.15 25.04 15.28 29.70 33.65 30.97 25.23 12.84 140.83 17.56 34.09 121.73 41.91 51.44 81.91 136.92 45.46 159.98 132.82 377.01 442.44 70 ER13b ExonRegion 0 19.19 10.98 9.00 18.28 19.94 25.38 24.94 26.89 23.96 16.67 131.18 25.98 37.08 127.27 39.61 59.48 87.63 101.16 44.64 126.72 123.35 341.72 386.66 71 E13a_E14a KnownJunction 0 29.34 21.18 10.73 24.71 31.15 51.73 29.90 24.52 15.19 20.33 141.98 37.81 27.27 135.56 53.03 40.25 110.52 84.11 26.73 144.96 117.93 254.24 303.81 72 E13a_E17a KnownJunction 0 0.00 0.00 0.00 4.10 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.01 73 E14_Aa NovelBoundary 0 3.19 6.45 2.54 4.10 0.00 0.00 6.18 8.75 1.33 0.00 5.32 6.30 0.00 12.01 0.00 3.33 4.49 29.10 0.00 26.72 23.41 7.72 8.71 74 ER14a ExonRegion 0 16.32 20.10 14.94 26.21 15.92 36.50 24.07 24.21 28.11 21.94 113.37 31.53 44.83 140.65 41.48 40.55 123.78 123.50 53.23 152.25 132.94 308.56 303.33 75 E14a_E15a KnownJunction 0 23.93 29.73 15.32 15.35 0.00 18.51 9.54 33.35 30.61 22.97 121.19 18.91 77.11 120.20 40.30 46.31 139.22 136.59 49.98 145.03 112.13 281.67 309.01 76 I14 Intron 0 2.64 1.90 2.75 2.75 0.69 3.05 3.99 4.82 4.49 3.11 3.51 2.04 3.61 5.40 2.28 4.79 6.00 20.99 10.42 13.15 13.05 15.80 23.33 77 I14_AR1 ActiveIntronRegion 0 3.02 2.27 3.05 2.48 0.53 3.73 3.94 5.34 5.19 3.46 3.43 1.64 4.56 6.34 2.69 5.71 6.76 23.06 10.75 14.29 14.58 19.03 26.74 78 ER15a ExonRegion 0 19.95 34.02 24.26 39.26 16.78 27.15 21.43 36.90 31.35 29.98 143.62 42.20 74.22 149.91 41.15 67.06 135.53 121.40 71.47 164.53 143.35 380.74 446.91 79 E15_Da KnownBoundary 0 20.74 22.76 12.12 41.95 26.40 11.19 18.64 14.29 11.31 14.59 26.85 12.60 25.65 27.08 0.00 12.22 21.88 25.45 25.32 25.69 28.97 58.17 37.90 80 E15a_E16a KnownJunction 0 7.33 9.47 25.61 3.86 12.73 29.53 11.70 33.23 26.27 12.87 129.40 18.16 39.61 125.67 37.58 70.67 152.41 97.71 54.59 119.27 133.87 325.82 282.72 81 ER15b ExonRegion 0 15.46 14.92 6.17 30.36 14.35 13.71 16.29 14.31 8.71 9.96 31.02 15.80 17.99 28.60 2.96 13.04 15.63 25.86 14.52 29.58 28.07 41.95 46.12 82 E15_Db NovelBoundary 0 41.93 20.52 11.80 35.19 15.62 20.44 22.88 14.62 20.57 21.81 27.85 6.30 20.45 33.14 4.45 7.78 20.48 42.53 12.42 44.04 37.25 74.46 97.83 83 I15 Intron 0 12.83 13.05 7.16 16.67 11.45 7.85 8.03 4.59 7.22 6.70 11.72 7.45 9.64 18.88 5.36 11.66 14.13 25.56 21.58 17.45 25.15 41.61 43.99 84 I15_SR1 SilentIntronRegion 0 12.92 13.15 7.21 16.79 11.53 7.90 8.08 4.63 7.26 6.75 11.80 7.50 9.71 19.00 5.39 11.74 14.23 25.73 21.74 17.58 25.31 41.91 44.30 85 E16_Aa NovelBoundary 0 13.56 15.39 5.50 33.03 7.22 15.33 17.80 17.54 13.60 15.74 16.85 0.00 12.99 26.31 0.00 12.30 33.66 34.36 15.81 30.42 46.09 46.90 48.23 86 ER16a ExonRegion 0 16.32 22.91 19.02 32.16 21.38 17.27 22.66 34.24 30.11 17.03 103.08 32.66 49.22 120.51 37.63 48.82 110.27 118.48 63.39 126.23 133.60 354.63 326.87 87 E16a_E17a KnownJunction 1 52.82 52.95 31.78 60.13 12.22 25.84 43.90 31.79 45.20 30.27 108.45 13.50 74.67 119.67 29.79 80.32 112.30 201.05 133.84 175.58 157.66 476.64 562.03 88 ER17a ExonRegion 0 27.89 22.83 31.11 35.41 14.18 39.42 22.96 29.92 35.11 18.14 110.38 28.69 54.83 118.60 37.29 65.80 117.79 146.38 77.75 123.22 150.01 278.63 392.27 89 E17a_E18a KnownJunction 0 10.82 17.83 22.71 28.70 3.57 19.48 10.69 18.44 34.46 6.21 102.82 25.21 62.66 146.27 36.34 69.30 96.03 115.12 89.04 146.75 153.15 367.58 333.09 90 ER18a ExonRegion 0 10.12 18.52 23.65 23.10 12.37 23.89 8.87 19.76 32.61 6.54 71.62 20.24 43.98 132.56 23.13 38.64 87.16 69.72 51.91 119.61 120.79 233.24 249.69 91 E18_Da KnownBoundary 1 13.56 24.54 32.29 26.00 26.32 28.39 18.77 24.11 38.02 10.69 52.38 7.65 33.28 120.73 15.20 12.65 91.54 63.63 28.89 95.68 116.20 183.52 236.03 92 ER18b ExonRegion 0 71.69 67.86 51.60 71.07 41.08 55.37 41.59 52.89 38.73 29.24 95.11 31.15 31.90 100.78 34.79 55.41 89.10 119.65 55.81 116.04 113.08 362.40 331.97 93 ER18c ExonRegion 0 11.64 4.07 1.23 1.36 0.00 6.42 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00