Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C3orf20 Gene 0 0.43 0.36 0.80 1.13 0.70 0.37 2.36 0.64 0.30 1.40 8.55 2.41 1.25 0.56 0.60 4.25 0.92 0.72 1.16 1.37 0.45 0.09 0.43 2 253697 Transcript 0 0.09 0.95 1.51 1.45 3.31 0.94 5.62 0.49 0.82 2.35 0.69 7.56 2.46 1.22 0.43 1.37 1.76 2.16 3.22 4.80 1.55 0.00 0.65 3 435614 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 412910 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 495387 Transcript 0 0.00 0.00 0.00 1.49 0.00 0.00 0.41 0.00 0.57 1.65 0.89 0.00 0.00 0.00 0.00 0.46 0.00 0.02 0.00 0.00 0.00 0.00 0.45 6 IG49 Intergenic 0 7.81 9.04 10.45 17.97 18.61 9.46 28.50 12.43 3.92 13.66 5.21 11.08 12.23 7.98 7.91 7.87 8.59 14.84 10.25 17.11 8.03 6.41 8.89 7 IG49_AR3 ActiveIntergenicRegion 0 8.87 8.12 16.04 21.69 16.83 10.07 24.57 17.49 6.06 16.55 5.79 10.07 10.24 8.94 9.08 10.38 9.22 22.30 13.99 18.47 9.90 7.49 10.26 8 IG49_SR4 SilentIntergenicRegion 0 7.95 11.45 6.28 16.95 23.43 10.33 37.14 9.13 2.30 12.83 5.44 13.92 15.91 8.25 7.32 6.51 9.30 9.41 7.97 18.42 7.36 6.30 8.88 9 ER1a ExonRegion 0 0.00 2.41 2.42 3.30 9.58 2.81 13.95 0.16 1.98 5.63 2.07 20.94 6.54 3.51 0.00 3.73 3.53 5.41 8.89 12.77 4.20 0.00 1.57 10 E1_Ab KnownBoundary 0 0.00 11.18 5.91 17.88 20.20 13.80 35.11 3.74 5.27 12.09 2.21 55.52 15.10 4.65 0.00 7.09 8.98 10.24 25.60 30.23 9.27 0.00 4.35 11 ER1b ExonRegion 0 0.00 11.08 9.96 11.48 11.13 10.95 35.05 4.00 2.47 9.90 5.09 23.47 9.63 3.63 6.49 8.76 6.25 15.12 40.15 18.20 11.71 3.07 3.32 12 E1_Ac KnownBoundary 0 0.00 9.08 11.68 15.32 7.81 14.14 55.95 6.70 0.00 9.21 6.90 18.91 13.15 0.00 20.77 12.39 3.74 18.86 38.97 23.39 10.75 5.69 3.84 13 ER1c ExonRegion 0 0.00 4.15 6.14 10.42 7.26 2.89 18.95 5.02 1.30 5.86 1.54 10.85 2.51 4.81 4.89 5.70 8.50 6.28 9.47 17.20 3.74 2.77 5.55 14 E1_Da NovelBoundary 0 0.00 16.44 3.05 13.38 28.44 8.01 92.04 11.91 3.50 15.96 4.53 7.65 12.99 9.65 9.27 7.78 4.58 15.13 4.52 23.27 8.96 6.25 7.94 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I1 Intron 0 2.08 5.57 3.94 12.35 11.77 5.99 20.37 9.69 2.34 10.86 4.07 5.99 6.97 5.13 4.19 4.92 3.66 6.97 7.42 10.13 4.31 4.10 3.33 18 I1_SR1 SilentIntronRegion 0 2.18 5.07 2.29 7.86 10.12 5.01 17.82 6.52 2.08 8.15 2.79 6.49 6.46 4.78 4.70 4.99 3.00 8.94 8.51 11.16 3.34 4.17 2.05 19 I1_AR1 ActiveIntronRegion 0 2.51 6.95 4.71 21.56 16.31 7.51 32.38 19.30 3.52 23.82 7.04 14.36 15.13 9.43 7.26 8.47 5.59 9.16 12.13 14.59 6.62 7.61 4.93 20 I1_SR2 SilentIntronRegion 0 1.96 5.31 6.07 15.09 13.48 8.10 20.91 11.45 2.44 12.31 4.37 5.89 9.24 8.06 6.26 7.13 4.86 10.76 11.98 14.49 7.75 4.58 6.43 21 I1_AR2 ActiveIntronRegion 0 4.05 11.34 9.02 26.54 28.15 11.69 39.67 21.76 5.57 23.16 13.25 9.46 16.05 7.10 2.94 7.58 6.84 14.05 15.74 15.60 9.48 10.96 6.55 22 I1_SR3 SilentIntronRegion 0 5.13 15.87 6.88 22.13 24.13 12.09 40.09 14.56 4.21 11.96 5.72 7.03 2.08 6.08 6.89 5.20 4.44 4.58 2.57 12.88 2.97 4.21 2.37 23 ER2a ExonRegion 0 0.00 0.02 0.00 0.78 0.00 0.00 7.09 0.00 0.01 1.64 0.00 0.00 0.00 0.00 0.03 0.00 1.59 0.02 0.00 0.34 0.87 0.00 0.00 24 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.76 0.00 0.00 8.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 2.29 0.00 0.00 25 ER2b ExonRegion 0 0.00 0.00 0.00 0.51 0.00 0.00 5.60 0.00 0.11 0.00 0.00 3.25 0.00 0.00 0.05 0.00 0.00 0.00 0.00 1.29 0.35 0.00 0.00 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER3a ExonRegion 0 0.27 0.42 2.11 1.04 0.34 0.00 2.90 1.32 0.47 1.41 0.00 1.75 0.82 0.15 1.30 0.38 1.75 1.06 0.78 1.64 0.45 0.00 0.38 29 E3_Ab KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 4.50 0.00 0.00 2.34 0.00 7.20 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 30 ER3b ExonRegion 0 0.97 0.17 1.68 0.00 0.61 0.00 0.91 1.78 1.27 2.07 0.00 0.31 0.30 0.00 0.10 0.00 1.41 0.00 0.07 0.49 0.21 0.00 0.67 31 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER4a ExonRegion 0 0.00 0.00 1.32 0.00 0.00 1.99 0.48 0.00 0.00 0.18 0.07 0.25 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.42 0.00 0.00 0.00 33 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 34 ER5a ExonRegion 0 0.19 0.00 0.51 1.73 1.43 0.00 1.69 1.09 0.00 0.71 12.27 6.93 0.00 2.25 1.40 9.56 0.00 0.00 0.00 0.14 0.00 0.00 0.00 35 E5a_E6a KnownJunction 0 2.82 0.00 1.69 0.00 3.74 0.00 0.00 0.00 0.00 0.00 22.58 0.00 0.00 4.59 4.45 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 0.64 0.00 1.07 0.00 0.76 0.29 1.02 0.00 0.00 0.67 24.21 2.86 0.00 2.00 0.31 8.11 0.00 0.00 0.00 0.82 0.00 0.00 0.00 37 E6a_E7a KnownJunction 0 0.00 0.00 3.67 0.00 0.00 2.90 0.00 0.00 0.00 0.00 25.64 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E7_Ab NovelBoundary 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 14.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 39 ER7a ExonRegion 0 0.00 0.00 2.45 0.00 0.00 1.83 0.00 0.00 0.00 1.15 26.14 0.00 0.00 0.00 0.00 2.50 0.00 1.07 0.00 0.00 0.00 0.00 0.00 40 ER7b ExonRegion 0 0.41 0.00 0.82 0.54 0.00 0.08 1.22 1.45 0.00 1.24 20.12 3.46 1.66 0.26 0.00 6.36 0.64 1.81 0.62 0.95 0.66 0.00 0.00 41 E7a_E8a KnownJunction 0 0.00 0.00 0.00 2.00 0.00 0.00 4.42 3.45 0.00 0.00 15.32 0.00 6.82 0.00 0.00 0.00 0.00 2.57 0.00 2.94 3.15 0.00 0.00 42 I7_AR4 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 20.72 0.00 0.00 2.07 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 I7_AR5 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 21.65 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 I7_AR6 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 1.15 0.00 21.03 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E8_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 15.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER8a ExonRegion 0 0.71 0.68 0.00 1.38 0.00 0.00 2.32 0.94 0.00 0.00 13.04 6.73 1.01 0.00 0.00 12.30 1.10 0.42 1.06 1.92 1.02 0.00 0.00 47 E8a_E9a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 17.74 7.65 0.00 0.00 0.00 25.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER9a ExonRegion 0 0.30 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.78 2.38 23.67 3.01 1.32 0.48 0.86 12.18 0.00 0.00 4.03 1.34 0.05 0.00 0.00 49 E9a_E10a KnownJunction 0 3.56 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 3.92 25.59 6.30 6.33 0.00 0.00 3.42 0.00 0.00 0.00 3.26 0.00 0.00 0.00 50 ER10a ExonRegion 0 1.36 0.00 0.00 1.98 0.00 0.00 3.77 0.00 0.00 4.58 26.53 2.13 4.76 0.66 0.00 13.58 0.00 2.09 1.23 2.06 0.00 0.00 1.13 51 E10a_E11a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 14.00 0.00 0.00 2.47 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E10a_E13a NovelJunction 0 3.56 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 2.50 10.69 0.00 0.00 4.83 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER11a ExonRegion 0 0.00 0.00 0.00 0.92 0.00 0.00 0.81 0.00 1.13 1.98 1.78 0.00 0.00 0.00 0.00 0.91 0.00 0.03 0.00 0.00 0.00 0.00 0.90 55 ER12a ExonRegion 0 1.74 0.00 0.00 0.00 0.00 0.00 0.34 1.06 0.00 2.81 11.71 1.47 1.89 0.31 0.00 7.36 0.00 0.00 0.00 0.00 0.00 0.00 0.62 56 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.42 0.00 13.15 0.00 0.00 11.62 0.00 0.00 0.00 0.00 0.00 0.00 4.18 57 ER13a ExonRegion 0 0.00 0.41 0.00 1.66 1.09 0.00 2.16 0.00 0.00 1.50 15.79 2.18 5.37 1.36 0.59 9.06 2.69 0.00 0.00 0.43 0.00 0.00 0.89 58 E13_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.74 11.10 0.00 4.94 0.00 3.85 0.00 0.00 0.00 3.00 0.00 0.00 0.00 59 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER14a ExonRegion 0 0.36 0.00 0.00 1.02 0.68 0.00 0.01 0.00 0.00 0.48 5.29 0.43 0.65 0.22 0.25 0.02 0.00 0.00 0.53 0.00 0.00 0.00 0.00 61 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER15a ExonRegion 0 0.00 0.00 0.00 0.82 0.62 0.00 0.60 0.00 0.00 0.00 3.40 0.00 0.00 0.00 0.56 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E15a_E16a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 4.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER16a ExonRegion 0 1.51 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.75 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER17a ExonRegion 0 0.80 0.00 0.00 0.77 0.00 0.00 0.50 0.00 0.00 0.00 9.95 0.00 0.00 0.00 1.87 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E18_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 69 ER18a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.87 0.20 0.00 0.00 0.00 3.63 0.85 0.00 0.32 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER18b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00