Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRPS25 Gene 0 110.35 84.42 129.92 106.00 71.31 172.43 71.15 86.07 61.54 44.34 162.82 80.75 56.74 204.33 136.01 163.26 107.96 128.33 120.90 123.89 63.13 59.58 77.57 2 253686 Transcript 0 63.55 61.76 130.66 69.95 41.61 106.30 46.51 57.71 48.60 37.31 207.43 83.43 39.92 216.61 166.98 154.60 106.02 91.85 85.64 100.60 62.51 40.67 52.23 3 444840 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 7.24 13.35 0.00 0.00 4.31 0.00 0.00 2.97 5.76 4.01 4 420267 Transcript 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.70 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.13 0.00 0.00 0.00 5 447299 Transcript 0 2.74 9.21 16.91 2.06 3.90 7.50 3.62 1.60 1.45 9.64 4.79 0.00 0.00 9.42 4.45 4.36 4.30 15.38 0.00 5.62 0.00 0.00 0.00 6 449354 Transcript 0 3.78 6.58 4.08 0.00 3.06 0.00 8.70 2.55 1.30 0.00 0.00 0.00 0.00 9.42 4.45 0.00 0.00 15.34 0.00 11.63 0.00 0.00 0.00 7 474866 Transcript 0 3.46 0.03 1.61 2.54 0.00 0.35 0.00 0.91 1.07 0.96 2.12 3.58 0.00 2.46 0.01 0.98 0.60 2.06 0.59 2.42 4.58 3.44 0.00 8 496484 Transcript 0 294.37 67.75 159.19 142.05 100.66 183.87 68.50 115.37 60.68 40.36 88.96 60.80 45.99 83.72 97.13 90.06 57.49 71.54 71.82 64.57 32.71 61.73 66.74 9 ER1a ExonRegion 0 1.78 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 2.31 2.75 0.47 0.00 0.68 0.00 0.00 0.00 0.00 0.00 10 E1_Ad KnownBoundary 1 41.12 15.46 0.00 0.00 14.26 75.07 27.87 0.00 0.00 0.00 42.38 5.70 11.69 129.26 212.99 165.51 47.87 13.51 81.79 20.45 21.87 21.37 59.92 11 ER1b ExonRegion 0 2.12 0.00 0.00 0.68 2.68 5.50 0.00 0.00 0.00 0.00 5.48 4.33 0.00 17.32 7.74 11.89 2.20 4.00 2.65 1.42 1.47 0.00 0.49 12 ER1c ExonRegion 1 37.52 15.71 15.37 15.74 13.14 66.02 25.76 1.41 2.02 6.36 48.67 4.33 0.00 193.71 175.92 173.19 51.31 54.59 76.45 22.63 17.23 23.68 66.47 13 ER1d ExonRegion 1 152.97 69.35 42.80 23.88 67.43 399.03 150.77 1.73 7.69 15.08 279.50 10.72 2.58 683.96 626.31 542.26 262.83 126.76 247.90 121.44 114.04 84.17 220.17 14 E1_Ae KnownBoundary 1 347.69 144.05 124.66 69.16 150.85 871.54 320.97 44.20 26.24 38.20 506.34 23.26 6.82 836.72 903.77 870.20 434.22 337.26 368.20 224.99 218.44 133.43 327.11 15 ER1e ExonRegion 1 53.79 43.60 107.45 38.36 42.97 187.67 59.11 37.71 27.04 34.87 298.33 74.19 42.14 393.71 355.29 311.98 224.86 140.12 193.22 122.89 117.75 76.30 138.75 16 E1a_E2a KnownJunction 1 24.60 59.53 231.45 109.84 22.92 49.29 12.50 92.50 67.24 68.90 359.04 103.98 45.29 559.72 677.79 716.22 246.19 307.75 389.66 246.53 114.47 132.26 242.86 17 ER2a ExonRegion 0 39.66 65.74 250.93 117.72 75.80 198.58 56.55 111.99 69.45 73.07 451.94 176.62 107.13 480.92 447.15 439.71 252.23 252.40 248.96 194.61 145.65 103.14 182.54 18 E2_Da NovelBoundary 0 23.71 14.34 3.28 16.91 16.21 2.67 16.47 12.65 6.34 5.53 24.85 12.15 0.00 22.07 27.07 42.13 12.90 24.54 14.40 17.39 26.50 8.39 4.18 19 E2a_E3a KnownJunction 1 44.23 54.27 228.67 104.82 128.18 657.92 181.51 148.48 79.95 79.16 447.32 257.78 77.11 449.88 434.02 239.17 273.12 199.76 172.24 211.25 115.65 81.81 146.31 20 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 7.24 13.35 0.00 0.00 4.31 0.00 0.00 2.97 5.76 4.01 21 I2 Intron 0 11.85 11.91 15.34 10.53 10.82 8.65 16.40 6.81 3.91 4.61 22.04 20.56 22.13 32.62 27.05 33.27 22.75 19.52 14.36 15.44 10.51 6.91 13.39 22 I2_AR1 ActiveIntronRegion 0 17.66 13.20 18.63 8.16 4.14 5.67 9.00 11.94 4.55 4.75 19.72 14.80 10.06 19.14 32.97 33.99 21.43 15.61 17.72 15.11 10.90 5.15 9.08 23 I2_SR1 SilentIntronRegion 0 10.79 11.76 14.81 11.10 12.30 9.32 18.09 5.83 3.82 4.63 22.75 21.93 24.83 35.70 26.11 33.47 23.28 20.53 13.84 15.65 10.55 7.33 14.42 24 E3_Aa NovelBoundary 0 6.82 12.50 6.92 8.46 3.74 22.54 5.87 0.00 9.58 2.66 15.64 12.60 40.42 23.90 6.06 10.77 24.68 11.73 4.14 2.36 12.17 8.39 12.38 25 ER3a ExonRegion 0 53.15 97.40 282.10 129.49 79.39 563.04 175.00 145.50 79.96 83.83 565.04 235.37 88.95 590.79 542.90 359.83 320.45 210.41 244.08 211.56 168.41 110.99 147.93 26 E3_Da KnownBoundary 0 3.78 3.35 11.35 15.88 4.33 19.99 4.50 4.93 5.24 5.75 10.58 17.86 0.00 22.19 10.75 8.72 17.77 11.52 0.00 9.08 2.97 2.27 17.41 27 E3a_E4a KnownJunction 1 131.36 128.40 402.20 156.12 68.25 230.66 94.46 137.43 119.12 97.32 673.49 244.88 97.56 648.48 562.58 446.12 313.88 218.33 203.58 246.66 187.56 105.02 122.84 28 E3a_E4d KnownJunction 0 3.78 6.58 4.08 0.00 3.06 0.00 8.70 2.55 1.30 0.00 0.00 0.00 0.00 9.42 4.45 0.00 0.00 15.34 0.00 11.63 0.00 0.00 0.00 29 ER3b ExonRegion 0 10.08 17.57 27.55 7.86 16.17 18.65 17.70 7.03 7.33 7.47 14.77 10.41 24.87 36.15 16.76 17.47 24.26 18.19 15.50 14.25 8.42 3.77 4.49 30 E3_Db NovelBoundary 0 3.33 8.62 30.60 9.86 33.11 7.95 26.01 6.94 9.95 7.58 28.11 6.30 19.64 19.60 4.45 26.83 18.14 10.99 27.20 27.36 11.61 13.72 29.71 31 E3b_E4a KnownJunction 0 2.74 9.21 16.91 2.06 3.90 7.50 3.62 1.60 1.45 9.64 4.79 0.00 0.00 9.42 4.45 4.36 4.30 15.38 0.00 5.62 0.00 0.00 0.00 32 E3b_E4d KnownJunction 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.70 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.13 0.00 0.00 0.00 33 Ix_AR1 ActiveIntronRegion 0 8.24 7.02 10.68 6.70 5.39 6.61 11.39 2.25 4.29 5.38 12.87 12.72 8.06 24.70 8.30 21.95 14.57 11.32 11.14 16.09 14.50 7.00 15.09 34 Ix_SR2 SilentIntronRegion 0 7.66 9.76 15.64 7.89 5.10 7.68 9.70 4.88 5.45 10.03 8.46 8.32 8.71 22.40 10.30 24.03 18.74 17.28 11.60 16.96 19.24 7.49 15.06 35 Ix_SR1 SilentIntronRegion 0 6.33 4.05 10.27 4.81 5.06 2.82 7.65 2.86 3.54 5.06 7.31 5.24 3.55 12.56 11.72 22.13 23.65 14.93 6.15 10.52 6.61 8.71 12.32 36 ER4a ExonRegion 1 90.43 87.51 274.21 109.25 59.05 155.35 58.29 116.59 95.16 77.60 589.04 231.29 70.77 575.35 528.10 359.25 339.40 193.92 229.17 205.28 168.22 137.23 131.88 37 E4_Da KnownBoundary 1 110.91 70.71 285.09 118.17 70.97 241.40 91.99 114.35 106.57 90.69 413.10 168.96 34.09 467.95 424.50 339.83 314.63 253.57 297.23 232.53 171.56 119.16 170.21 38 ER4b ExonRegion 0 61.35 93.25 142.65 112.90 64.67 203.68 75.44 95.30 78.33 55.44 224.75 55.51 48.04 289.84 149.16 229.81 146.11 217.04 175.14 159.45 109.71 83.44 95.48 39 E4_Db KnownBoundary 1 127.58 125.83 107.54 98.62 59.51 150.60 73.05 73.11 58.13 46.34 124.29 49.67 18.34 239.21 73.68 150.05 113.42 156.24 133.27 153.34 84.14 52.29 58.82 40 ER4c ExonRegion 0 98.47 97.74 110.50 114.44 94.19 180.84 82.60 89.41 73.17 49.22 152.31 84.02 59.36 207.92 94.35 164.61 106.96 144.46 133.44 145.69 62.05 55.03 84.10 41 E4_Ab KnownBoundary 1 180.11 105.18 148.99 189.82 103.82 246.85 88.59 137.23 134.58 67.83 84.60 154.85 111.19 164.34 167.13 140.31 66.01 84.81 130.07 112.56 31.01 51.25 35.60 42 ER4d ExonRegion 0 264.28 162.07 156.90 194.47 145.40 253.42 131.82 164.61 123.33 65.54 148.07 201.95 158.66 204.75 123.98 142.60 58.61 120.72 110.07 163.09 33.95 76.67 84.55 43 E4_Ac KnownBoundary 1 247.08 207.46 171.82 189.89 120.97 196.19 113.45 141.79 128.15 69.71 115.77 219.22 231.80 210.25 129.06 134.15 43.85 160.05 121.42 163.05 47.75 68.52 87.33 44 E4_Ad KnownBoundary 0 403.63 220.95 122.97 99.65 170.88 288.24 118.62 96.57 57.61 39.38 156.99 135.79 89.77 173.47 133.75 123.39 69.94 118.31 131.77 128.79 47.94 50.52 60.69 45 ER4e ExonRegion 0 309.54 206.98 174.27 175.17 143.82 238.57 111.46 146.43 116.06 67.24 148.17 163.71 155.06 205.25 136.36 123.81 64.88 182.87 120.45 146.28 49.79 61.40 77.45 46 ER4f ExonRegion 0 226.55 146.53 131.39 133.46 170.46 371.92 135.66 137.57 84.01 59.24 191.36 190.26 125.76 187.25 132.92 171.61 91.69 170.16 111.61 190.27 65.17 54.67 78.36 47 E4_Dc KnownBoundary 0 658.86 462.88 471.39 637.38 445.25 529.41 549.56 537.00 459.34 464.74 330.19 332.06 271.57 259.40 273.07 478.93 405.70 623.62 370.46 604.91 293.32 174.58 382.00 48 ER4g ExonRegion 0 248.48 117.42 142.68 159.81 91.05 203.53 84.06 132.10 109.43 58.92 171.39 153.23 90.60 225.93 148.57 193.22 127.36 205.78 144.06 218.91 77.22 68.56 111.78 49 E4_Dd KnownBoundary 0 57.64 84.52 94.64 102.85 30.65 72.91 79.76 35.65 38.92 27.26 116.50 59.42 74.67 134.68 95.06 159.62 103.13 129.79 91.77 135.25 27.61 22.90 40.55 50 E4d_E5a KnownJunction 0 3.48 0.00 1.71 3.66 0.00 0.00 0.00 0.00 1.30 1.58 2.58 6.15 0.00 2.24 0.00 0.00 0.00 1.58 0.00 3.00 6.12 5.69 0.00 51 E4d_E6a KnownJunction 0 250.19 9.41 24.95 48.68 69.19 52.75 21.29 32.98 24.65 8.30 45.12 18.31 0.00 38.26 61.69 33.50 26.09 21.02 17.32 5.69 17.17 8.45 31.24 52 ER4h ExonRegion 0 77.12 83.09 112.24 87.97 40.00 97.58 56.68 45.82 34.71 26.94 80.12 53.18 57.32 131.06 77.26 114.39 67.20 87.86 81.46 109.73 34.42 21.69 41.20 53 E4_De KnownBoundary 0 66.83 48.35 92.63 78.41 29.71 92.84 71.50 47.32 26.22 22.00 39.17 19.66 38.80 73.75 67.00 77.50 41.80 39.96 79.81 98.43 9.76 10.78 21.68 54 ER4i ExonRegion 0 22.60 20.90 9.94 9.25 3.15 13.68 8.98 4.00 2.10 2.70 2.72 4.80 2.78 7.72 8.26 7.20 3.24 3.92 5.54 10.05 0.42 2.65 1.98 55 E4_Df NovelBoundary 1 471.42 497.87 228.94 355.77 366.21 281.43 328.48 277.62 126.30 120.53 65.44 205.87 257.61 109.07 70.46 127.23 36.84 59.78 89.23 144.39 5.13 237.34 75.29 56 E5_Aa NovelBoundary 0 137.06 415.65 103.34 154.33 190.41 451.84 287.59 160.15 105.47 103.31 244.06 151.25 132.62 218.91 111.75 217.12 196.26 276.58 228.24 347.65 146.66 119.22 119.00 57 ER5a ExonRegion 0 3.43 0.06 1.50 1.42 0.00 0.70 0.00 1.82 0.83 0.34 1.67 1.02 0.00 2.68 0.02 1.97 1.21 2.55 1.19 1.83 3.04 1.18 0.00 58 E5_Da NovelBoundary 1 80.16 171.55 170.93 292.57 192.28 216.52 179.74 227.10 139.09 140.78 212.21 202.12 139.60 207.96 45.99 146.88 128.47 185.42 164.52 308.27 101.81 179.97 117.55 59 E6_Aa NovelBoundary 0 333.84 76.30 205.46 144.04 106.54 201.59 124.72 125.03 86.57 62.91 127.08 120.04 65.74 97.12 68.98 105.53 101.08 131.70 94.21 158.90 104.22 72.93 64.79 60 ER6a ExonRegion 0 338.54 126.09 293.42 235.43 132.13 314.99 115.71 197.76 96.71 72.41 132.80 103.29 91.98 129.18 132.58 146.62 88.89 122.07 126.32 123.45 48.25 115.02 102.23