Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SGOL1 Gene 0 25.83 41.80 18.44 9.62 28.30 10.79 72.58 20.40 3.17 17.19 58.46 65.15 43.11 58.64 34.60 31.63 51.38 26.97 11.00 37.34 0.62 6.28 2.90 2 412997 Transcript 0 0.85 0.00 0.13 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 429446 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 442720 Transcript 0 0.19 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 412868 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 437051 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 383774 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 263753 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 306698 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 419233 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 482867 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 417364 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 427162 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 443724 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 472533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 440105 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 425061 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 452020 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 421451 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 456624 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 460637 Transcript 0 5.23 6.44 2.11 2.12 3.05 0.82 4.93 3.17 3.60 1.24 6.01 5.29 5.86 6.05 5.56 2.64 3.85 4.16 1.86 2.30 0.12 0.23 0.41 22 ER1a ExonRegion 0 0.85 0.00 0.13 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1_Ab KnownBoundary 0 15.93 5.66 2.96 0.00 0.00 0.00 10.51 0.00 1.07 1.32 4.58 0.00 0.00 0.00 0.00 0.00 7.67 0.00 4.80 18.73 0.00 0.00 0.00 24 E1_Ac KnownBoundary 0 3.04 2.96 5.38 0.00 6.45 0.00 0.00 1.81 0.00 1.50 2.05 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1b ExonRegion 0 5.22 5.69 1.88 0.55 0.00 0.98 5.91 1.38 0.00 2.52 3.87 0.00 0.00 3.68 9.48 3.17 5.28 3.33 2.12 4.40 0.00 0.00 0.00 26 ER1c ExonRegion 0 48.62 65.02 6.62 1.36 6.88 15.82 48.46 4.40 1.27 10.29 26.34 0.00 2.14 31.04 29.18 36.94 27.54 25.66 19.66 25.11 0.00 2.08 6.29 27 E1_Ad KnownBoundary 0 108.02 119.19 8.54 4.13 20.29 35.43 94.07 6.94 3.12 13.05 39.22 0.00 6.82 52.92 33.62 78.44 46.84 80.92 31.44 43.72 0.00 2.94 12.46 28 E1_Ae KnownBoundary 0 20.23 40.32 7.18 0.00 0.00 8.35 30.07 5.09 5.35 9.83 27.74 0.00 6.82 9.30 5.07 24.87 18.61 36.85 0.00 9.08 0.00 0.00 0.00 29 ER1d ExonRegion 1 64.52 96.14 9.85 1.41 7.47 20.74 68.21 8.46 3.71 15.90 40.06 0.00 9.06 37.30 16.81 47.55 34.15 46.83 18.34 28.25 0.00 1.15 7.39 30 ER1e ExonRegion 0 21.47 33.34 7.83 3.38 7.50 9.69 71.73 11.27 2.36 12.84 28.96 10.59 4.86 21.52 11.19 14.22 30.36 40.12 3.47 12.96 0.00 0.00 0.26 31 E1_Da KnownBoundary 0 0.00 5.13 2.60 2.93 6.71 4.20 36.70 7.97 0.00 8.46 12.42 0.00 6.33 21.19 4.33 11.88 10.19 19.19 0.00 8.69 0.00 0.00 0.00 32 E1a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E1_Db KnownBoundary 0 0.00 3.35 1.15 0.00 0.00 0.00 7.95 2.18 0.00 6.31 9.48 0.00 0.00 12.77 18.42 0.00 4.77 10.20 0.00 0.00 0.00 0.00 0.00 34 E1b_E2a KnownJunction 1 0.00 13.09 9.08 8.32 8.32 5.79 46.64 11.38 1.30 11.23 37.80 18.01 8.12 19.13 5.93 0.00 45.82 21.93 4.05 25.57 0.00 0.00 0.00 35 ER1f ExonRegion 1 3.17 14.91 10.01 7.84 9.14 7.03 65.32 12.10 1.24 16.82 42.20 20.56 9.38 34.51 17.17 5.45 51.16 31.87 4.51 23.40 0.00 0.52 0.00 36 ER1g ExonRegion 0 1.37 25.15 5.13 2.11 1.11 2.86 14.53 8.74 0.00 9.54 22.39 9.67 5.75 34.88 19.45 35.24 28.58 37.52 10.45 19.42 0.00 3.98 3.89 37 E1_Dc NovelBoundary 0 6.30 0.00 0.00 0.00 0.00 0.00 3.71 0.00 0.00 4.78 7.05 6.30 0.00 2.12 0.00 4.19 0.00 18.16 4.80 8.82 0.00 0.00 0.00 38 E1c_E2a KnownJunction 1 11.48 41.64 11.83 5.03 8.66 2.44 19.70 12.24 0.00 13.22 47.54 69.32 29.38 63.92 46.73 114.84 35.25 91.36 28.71 27.74 0.00 6.00 15.19 39 E2_Ac NovelBoundary 0 31.19 53.21 29.30 12.95 23.77 7.78 45.62 25.71 3.73 30.17 91.50 19.06 46.59 49.97 24.85 62.55 82.75 71.51 19.20 56.50 0.00 3.00 7.09 40 ER2a ExonRegion 0 18.34 44.06 26.55 14.99 26.76 9.17 57.81 22.47 1.24 27.53 103.09 67.83 42.21 72.54 55.12 107.00 88.02 117.02 25.48 58.87 0.00 6.25 11.75 41 ER2b ExonRegion 0 18.75 55.20 29.85 14.99 27.33 12.97 63.27 34.32 3.35 34.49 120.53 71.44 53.60 79.00 44.35 100.84 102.56 113.50 27.08 63.53 0.00 7.14 11.96 42 ER2c ExonRegion 0 25.43 120.86 39.80 25.39 45.91 19.32 126.28 47.81 6.82 55.10 170.83 106.01 81.33 126.34 64.53 80.95 123.61 79.64 25.22 98.11 1.99 19.92 6.76 43 E2a_E3a KnownJunction 0 76.24 113.93 56.50 38.09 71.65 31.57 238.79 44.52 2.98 46.93 147.62 128.74 73.37 84.64 144.76 93.91 121.36 58.49 25.04 97.47 2.97 23.02 11.10 44 ER3a ExonRegion 0 64.28 114.46 62.57 40.18 72.19 30.90 182.59 66.28 4.78 55.92 171.61 161.32 125.92 118.35 111.26 98.79 103.05 61.50 23.75 100.23 2.01 14.58 12.00 45 E3_Da KnownBoundary 0 64.01 121.75 75.43 48.18 90.07 22.15 207.43 102.19 9.55 69.76 192.42 235.88 108.11 154.63 55.75 93.39 114.07 65.66 36.71 113.01 2.41 8.57 18.52 46 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER3b ExonRegion 0 65.07 122.59 41.25 33.74 67.16 24.35 157.50 56.40 7.43 49.63 226.98 224.67 135.82 140.79 93.05 82.63 142.73 71.06 30.59 112.65 1.36 22.09 12.80 48 E3b_E4a KnownJunction 0 66.01 209.17 37.76 33.20 70.80 28.68 195.29 44.15 7.93 62.13 225.00 190.71 228.23 149.86 94.44 90.06 203.83 64.87 42.92 129.88 0.00 11.33 12.29 49 E4_Aa NovelBoundary 0 0.00 0.00 0.00 4.13 4.07 5.79 17.71 16.43 0.00 2.82 5.00 7.35 0.00 2.24 9.89 3.59 4.77 0.00 0.00 14.76 0.00 2.88 0.00 50 ER4a ExonRegion 0 61.68 135.96 37.52 17.95 84.13 15.43 159.46 39.71 6.10 49.30 216.84 203.82 155.50 154.21 67.14 73.34 171.48 56.75 35.37 112.88 0.00 9.17 9.50 51 E4a_E5a KnownJunction 1 91.42 109.85 52.10 18.38 106.54 12.61 161.94 46.33 7.44 38.36 206.53 246.38 143.66 137.68 47.22 41.70 165.40 50.66 30.49 110.13 0.00 14.82 12.80 52 ER4b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 Ix_SR1 SilentIntronRegion 0 1.10 0.70 1.58 1.90 5.03 0.95 10.22 6.43 0.32 2.04 2.51 13.16 6.08 4.30 2.76 4.11 1.14 1.35 1.10 3.09 0.00 0.90 0.51 54 ER5a ExonRegion 0 55.85 81.31 53.40 26.06 83.72 20.70 173.06 43.80 6.91 47.55 201.15 251.55 155.09 141.71 88.07 62.06 154.02 68.93 21.38 97.55 0.00 14.55 5.08 55 E5a_E6a KnownJunction 0 41.86 62.82 44.11 25.97 35.14 5.34 155.14 39.31 7.67 40.48 138.03 194.76 141.06 112.78 111.26 66.22 112.95 38.43 21.74 88.53 0.00 8.70 0.00 56 E5a_E7b KnownJunction 0 7.56 11.51 5.14 1.43 3.65 0.00 16.52 2.18 0.00 14.45 45.59 58.97 39.93 31.96 39.80 14.70 47.41 18.61 3.58 13.49 0.00 2.45 4.35 57 E6_Aa NovelBoundary 0 3.56 0.00 0.00 2.06 23.60 0.00 10.60 2.55 0.00 0.00 4.95 12.60 0.00 0.00 5.07 0.00 0.00 1.78 0.00 8.50 0.00 3.12 0.00 58 ER6a ExonRegion 0 56.90 64.40 49.74 21.99 57.66 13.16 134.45 40.03 6.93 38.81 138.30 139.22 120.29 138.91 63.03 49.83 122.78 44.31 28.54 100.63 0.00 12.79 4.38 59 E6_Da KnownBoundary 1 60.90 56.90 52.45 18.15 74.19 7.27 141.81 31.91 1.30 33.31 119.08 90.18 84.25 101.01 18.54 22.99 95.65 23.50 12.99 106.49 0.00 8.02 4.35 60 E6a_E7b KnownJunction 0 5.93 12.04 15.58 4.13 28.61 8.69 36.88 6.86 3.24 7.01 32.27 26.56 21.26 33.79 6.30 0.00 22.25 16.42 12.80 12.02 0.00 0.00 0.00 61 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 62 ER6b ExonRegion 0 69.52 51.57 40.00 21.02 59.71 12.99 133.56 30.93 4.38 31.10 112.98 146.31 90.95 115.23 52.23 51.61 119.70 35.42 14.59 72.36 0.79 10.41 2.86 63 E6_Db KnownBoundary 0 129.28 72.68 25.75 3.86 16.38 0.00 105.20 29.57 4.89 11.63 77.65 70.07 58.60 55.80 13.35 17.17 50.40 13.93 0.00 56.12 0.00 13.59 0.00 64 ER6c ExonRegion 1 59.08 65.24 31.97 10.44 57.64 21.27 140.08 27.02 4.58 17.37 53.80 119.40 82.25 84.39 51.92 44.98 65.13 32.32 18.96 51.14 0.44 8.42 4.97 65 E6c_E7b KnownJunction 0 112.76 109.32 31.40 11.29 34.47 19.48 127.28 21.73 2.40 16.92 94.02 121.24 52.27 104.83 96.55 81.18 81.16 88.88 52.43 58.61 6.05 0.00 6.32 66 E7_Aa NovelBoundary 0 27.34 0.00 1.54 4.03 14.69 0.00 18.15 7.80 1.79 2.04 7.16 0.00 6.17 7.12 4.45 3.85 4.77 0.00 4.80 6.01 0.00 0.00 4.01 67 ER7a ExonRegion 0 5.23 6.44 2.11 2.12 3.05 0.82 4.93 3.17 3.60 1.24 6.01 5.29 5.86 6.05 5.56 2.64 3.85 4.16 1.86 2.30 0.12 0.23 0.41 68 E7_Ab KnownBoundary 0 15.41 9.27 3.31 5.39 7.30 0.00 7.77 9.24 15.16 3.30 2.63 0.00 6.82 3.00 4.45 0.00 0.00 4.39 0.00 2.88 0.00 0.00 0.00 69 ER7b ExonRegion 0 34.88 83.13 38.03 17.67 62.99 34.92 164.68 36.70 7.21 31.91 137.24 114.56 70.97 153.79 97.57 75.97 117.16 82.08 26.61 71.73 2.09 9.77 5.02 70 E7_Da NovelBoundary 0 3.78 3.35 10.79 2.63 4.33 5.68 11.13 17.66 5.73 2.36 2.47 6.30 0.00 9.95 5.44 8.29 4.21 5.68 0.00 0.00 0.00 0.00 0.00 71 E7a_E8a KnownJunction 0 19.19 38.15 28.06 18.81 27.42 21.46 45.58 37.30 1.19 21.36 96.55 159.05 98.53 138.91 101.24 91.60 101.92 94.35 17.13 76.96 5.50 3.12 3.93 72 I7_AR1 ActiveIntronRegion 0 10.64 8.18 3.49 2.43 12.68 3.07 12.95 8.01 1.76 4.84 5.92 0.85 2.77 3.07 3.84 2.13 6.32 1.09 0.00 4.49 0.00 0.50 1.41 73 E8_Aa NovelBoundary 0 22.89 12.56 5.77 3.40 8.49 0.00 12.67 12.86 3.94 8.03 9.84 6.30 0.00 2.47 13.97 0.00 4.77 1.74 0.00 5.05 0.00 0.00 0.00 74 ER8a ExonRegion 0 14.26 47.55 41.76 21.39 52.26 12.76 95.11 57.43 10.62 30.60 109.76 114.87 59.80 163.38 95.43 75.27 106.38 58.99 18.90 69.98 2.66 22.87 2.20 75 E8_Da KnownBoundary 1 23.63 84.66 48.46 19.91 60.87 19.25 114.38 69.66 12.24 54.07 116.66 80.13 54.70 170.58 82.58 45.20 147.26 39.67 16.38 80.09 5.68 10.96 0.00 76 E8a_E9a KnownJunction 0 2.74 3.35 0.00 0.00 3.40 0.00 8.04 4.03 0.00 0.00 7.16 0.00 0.00 31.73 0.00 0.00 12.81 4.81 0.00 0.00 0.00 0.00 0.00 77 ER8b ExonRegion 0 19.87 67.49 41.85 15.61 49.27 16.50 102.01 45.98 7.04 36.11 75.77 73.22 49.54 94.63 67.35 45.81 76.25 42.75 9.16 50.48 1.96 10.83 3.74 78 E8_Db KnownBoundary 0 13.19 55.78 53.75 34.46 76.15 29.19 150.46 60.91 7.32 32.58 54.49 43.66 26.30 55.98 52.66 37.60 47.69 52.77 9.13 26.59 0.00 17.21 0.00 79 ER8c ExonRegion 0 26.81 44.40 22.39 9.66 19.55 19.05 118.32 28.18 5.58 22.08 39.49 54.05 37.99 50.46 35.43 26.41 43.65 19.66 4.92 31.49 0.00 11.78 0.99 80 E8_Dc KnownBoundary 1 6.22 29.34 7.51 1.86 3.57 2.50 26.63 4.07 1.22 2.36 2.21 5.70 27.60 9.42 10.75 6.66 0.00 3.86 0.00 5.24 0.00 0.00 0.00 81 E8_Dd KnownBoundary 0 5.93 24.27 1.60 2.06 7.22 6.76 39.48 7.64 1.68 5.00 2.11 7.65 6.49 3.00 8.90 7.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 ER8d ExonRegion 1 6.88 38.38 4.29 2.73 3.68 8.02 49.98 8.43 1.24 6.88 0.00 21.11 31.07 14.62 23.57 8.17 0.00 5.54 0.00 7.18 0.00 0.52 0.00 83 ER8e ExonRegion 0 3.99 12.93 0.11 0.19 4.75 1.66 13.85 0.63 0.14 0.47 0.00 3.03 2.28 2.36 4.77 0.90 0.79 0.43 0.76 0.64 0.54 0.49 0.71 84 E8_De KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 5.25 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 E8_Df KnownBoundary 0 0.00 0.00 1.74 1.76 0.00 0.00 0.00 0.00 0.00 1.58 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER8f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 ER8g ExonRegion 0 0.19 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88 E8_Dg NovelBoundary 1 20.23 39.53 9.20 4.59 0.00 0.00 35.55 18.32 6.42 21.01 0.00 35.56 28.41 21.43 27.44 20.17 3.74 12.85 0.00 28.89 0.00 0.00 4.35 89 I8 Intron 0 7.88 12.57 4.48 5.00 10.79 1.16 18.20 9.91 1.74 7.24 2.92 9.04 4.99 6.01 7.86 5.63 4.58 2.96 1.41 7.11 0.00 1.32 0.37 90 I8_SR1 SilentIntronRegion 0 7.88 12.57 4.48 5.00 10.79 1.16 18.20 9.91 1.74 7.24 2.92 9.04 4.99 6.01 7.86 5.63 4.58 2.96 1.41 7.11 0.00 1.32 0.37 91 E9_Aa NovelBoundary 0 2.89 16.12 0.00 5.79 0.00 12.78 18.77 15.48 5.70 4.32 7.48 0.00 0.00 7.30 0.00 4.36 3.55 6.34 4.52 8.82 0.00 0.00 0.00 92 ER9a ExonRegion 0 3.94 8.67 0.00 1.93 6.75 0.43 20.00 10.00 1.08 7.29 15.06 12.93 3.40 23.59 9.89 9.20 10.36 7.22 3.64 12.02 1.55 1.49 0.54 93 E9_Da KnownBoundary 0 2.96 9.47 0.00 5.39 0.00 0.00 11.70 20.78 1.79 3.01 22.01 0.00 6.82 12.36 4.45 3.33 12.81 1.87 9.60 15.15 0.00 6.18 3.59 94 ER9b ExonRegion 0 5.26 12.33 2.47 4.98 3.30 3.84 17.55 13.14 1.70 5.86 13.28 10.77 6.93 14.93 9.06 11.63 9.78 6.63 4.72 14.90 0.00 1.01 0.44 95 ER9c ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 4.33 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 96 IG32_SR1 SilentIntergenicRegion 0 5.25 10.86 1.59 7.81 9.96 2.96 18.89 16.94 2.51 9.97 2.64 6.57 4.24 4.08 0.80 3.32 0.00 5.26 1.58 9.50 0.00 1.03 0.73