Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LMCD1 Gene 0 25.42 8.85 26.66 13.02 18.90 14.33 8.12 22.98 10.34 11.16 0.23 0.14 0.00 1.16 0.00 0.06 0.59 14.81 19.54 9.85 36.79 29.22 18.47 2 157600 Transcript 0 0.34 0.00 0.19 0.00 0.82 0.00 0.23 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.30 1.80 1.28 3 415597 Transcript 0 0.54 0.00 0.74 0.82 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.76 1.26 2.75 0.02 0.00 4 470776 Transcript 0 0.43 1.33 0.00 0.00 0.00 0.00 0.87 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 1.84 5 397386 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 454244 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 0.00 2.57 0.00 7 456506 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 426878 Transcript 0 3.35 1.49 5.27 2.27 0.93 1.02 1.10 5.11 2.54 1.71 0.00 0.00 0.00 0.38 0.00 0.09 0.10 4.71 7.57 2.17 10.59 8.68 6.91 9 ER1a ExonRegion 0 0.34 0.00 0.19 0.00 0.82 0.00 0.23 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.30 1.80 1.28 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ac KnownBoundary 0 3.63 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.94 4.01 12 ER1b ExonRegion 0 4.23 0.00 1.23 0.00 5.35 0.00 1.32 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 2.20 6.25 8.81 13 ER1c ExonRegion 0 34.57 1.54 3.01 1.49 9.49 10.56 6.98 1.78 2.58 2.22 0.00 0.00 0.00 0.64 0.00 0.00 0.00 4.20 1.83 0.84 13.29 11.55 14.51 14 E1_Ad KnownBoundary 0 97.65 5.59 1.63 1.90 22.84 24.13 20.31 0.00 1.62 1.56 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.24 4.05 2.75 24.46 11.39 14.68 15 E1_Ae KnownBoundary 0 80.68 15.00 23.36 6.76 28.69 35.83 12.50 11.01 6.94 8.86 0.00 0.00 0.00 0.00 0.00 0.00 4.77 11.73 39.15 5.50 86.43 28.29 58.05 16 ER1d ExonRegion 0 87.55 9.35 13.19 3.27 26.49 38.39 16.95 6.28 6.01 6.50 0.00 0.00 0.00 1.57 0.00 0.00 2.42 6.71 21.77 3.97 55.90 21.11 38.18 17 ER1e ExonRegion 0 39.96 15.12 19.19 3.93 21.96 19.41 12.66 11.25 6.90 7.68 0.00 0.00 0.00 0.00 0.00 0.00 2.44 12.61 42.00 9.14 48.51 20.90 24.20 18 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.93 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 4.52 3.20 0.00 0.00 0.00 19 E1a_E3a KnownJunction 0 33.34 5.39 17.83 7.66 22.50 11.02 11.35 16.14 7.87 5.96 0.00 0.00 0.00 0.00 0.00 0.00 4.02 7.42 47.44 14.57 47.38 22.72 10.67 20 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 0.00 2.57 0.00 21 ER2a ExonRegion 0 1.61 0.00 0.50 0.52 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.76 0.57 3.13 0.06 0.00 22 E2a_E3a KnownJunction 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 23 Ix_AR3 ActiveIntronRegion 0 18.80 1.37 6.14 2.46 5.04 0.00 4.63 1.73 1.49 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.86 0.00 0.84 1.58 24 Ix_SR4 SilentIntronRegion 0 10.59 1.61 5.35 1.70 2.89 0.00 3.18 2.18 1.92 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.46 0.34 0.00 1.66 25 ER3a ExonRegion 0 16.69 5.39 25.88 12.02 3.34 8.63 4.69 21.54 13.88 11.87 0.00 0.00 0.00 0.38 0.00 0.00 2.34 18.71 23.84 17.45 76.63 42.28 19.07 26 E3a_E4b KnownJunction 0 14.82 15.66 45.68 18.71 3.57 7.21 7.82 32.61 22.45 13.81 0.00 0.00 0.00 4.53 0.00 0.00 0.00 38.68 60.24 14.13 67.34 70.11 47.80 27 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 28 ER4a ExonRegion 0 4.23 3.39 12.25 5.91 0.89 3.06 1.77 9.79 6.18 4.97 0.00 0.00 0.00 0.54 0.00 0.00 0.00 11.70 20.17 4.26 17.63 20.14 17.62 29 ER4b ExonRegion 0 28.40 14.52 43.86 24.65 30.59 26.77 12.39 38.00 23.67 18.62 0.77 0.71 0.00 3.22 0.00 0.00 1.32 31.02 43.98 18.98 76.84 46.92 42.59 30 E4_Da KnownBoundary 0 7.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E4a_E5a KnownJunction 0 77.12 30.39 58.60 30.10 21.82 23.91 6.23 52.90 20.49 21.49 0.00 0.00 0.00 2.12 0.00 0.00 0.00 28.40 55.06 11.31 83.28 19.47 40.38 32 ER4c ExonRegion 0 0.43 1.33 0.00 0.00 0.00 0.00 0.87 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 1.84 33 ER5a ExonRegion 0 37.77 12.68 40.70 18.65 19.29 22.74 7.21 26.25 14.78 16.05 0.33 0.61 0.00 1.88 0.00 0.00 0.51 25.76 34.65 15.68 50.61 33.78 25.83 34 E5_Da KnownBoundary 0 61.49 9.41 30.16 14.25 29.97 31.40 1.99 17.13 11.81 19.74 0.00 0.00 0.00 4.59 0.00 0.00 0.00 19.98 17.88 8.31 66.72 60.93 27.74 35 ER5b ExonRegion 0 41.38 9.56 33.33 24.02 18.86 18.84 9.50 14.35 11.49 15.00 1.40 0.00 0.00 0.97 0.00 0.00 0.41 16.03 24.21 12.50 57.24 44.22 18.43 36 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 37 E5b_E7a KnownJunction 0 59.79 21.38 40.89 32.16 18.00 19.02 26.90 17.83 14.03 9.70 2.63 0.00 0.00 0.00 0.00 0.00 0.00 26.65 51.11 17.00 60.60 37.35 15.11 38 ER6a ExonRegion 0 5.81 1.08 3.56 0.90 1.90 0.00 1.52 3.65 1.46 0.15 0.00 0.00 0.00 0.59 0.00 0.26 0.29 2.44 2.54 2.26 11.00 5.90 3.12 39 Ix_AR1 ActiveIntronRegion 0 3.41 0.31 5.01 1.60 2.33 0.75 2.48 3.60 1.48 0.29 0.00 0.00 0.00 0.92 0.00 0.51 0.00 2.26 0.55 0.73 8.18 7.86 3.40 40 Ix_AR4 ActiveIntronRegion 0 1.50 0.83 0.60 1.16 2.07 0.61 0.34 3.47 2.92 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.22 1.62 0.00 8.09 4.24 4.96 41 Ix_AR5 ActiveIntronRegion 0 2.52 1.11 0.66 1.20 2.64 1.00 3.36 2.96 2.33 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.47 0.74 5.27 9.40 4.91 42 Ix_SR4 SilentIntronRegion 0 2.61 1.51 1.82 0.97 1.74 1.13 2.01 3.06 2.55 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.10 2.12 2.33 7.65 8.70 5.58 43 E7_Aa NovelBoundary 0 7.11 5.79 3.40 0.00 19.86 5.79 4.20 9.12 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 4.61 0.00 10.75 0.00 8.11 44 ER7a ExonRegion 0 35.12 12.78 33.35 18.24 15.96 21.26 11.77 27.26 14.52 12.44 0.65 0.00 0.00 2.19 0.00 0.00 0.00 28.23 22.89 13.07 50.75 28.30 18.72 45 E7a_E8a KnownJunction 0 52.31 20.52 50.83 27.90 34.63 16.64 11.26 25.22 15.94 11.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.48 8.47 25.69 44.29 22.47 26.63 46 E8_Aa NovelBoundary 0 0.00 0.00 1.30 0.00 0.00 0.00 3.53 4.93 2.49 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.23 3.93 47 ER8a ExonRegion 0 56.83 13.91 51.99 21.10 38.11 26.84 15.47 46.32 15.99 17.81 0.54 0.00 0.00 1.42 0.00 0.00 0.92 28.31 25.03 18.79 66.77 42.39 28.80 48 E8_Da KnownBoundary 0 43.12 18.81 74.36 16.41 32.34 18.80 8.21 55.04 13.63 33.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.33 34.82 18.47 47.88 48.01 27.15 49 ER8b ExonRegion 0 29.29 12.91 47.30 22.47 41.75 24.03 16.64 44.93 15.08 20.95 0.00 0.00 0.00 0.55 0.00 0.00 1.18 17.03 28.85 16.47 44.29 58.32 26.02 50 E8_Db KnownBoundary 0 43.79 24.47 21.85 7.16 70.12 19.53 14.04 32.08 8.54 17.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 22.21 9.08 7.66 72.68 32.10 51 ER8c ExonRegion 0 30.54 13.81 39.49 21.54 37.83 15.94 11.89 42.65 12.83 21.38 0.00 0.00 0.00 0.93 0.00 0.00 0.00 10.00 16.97 8.21 23.58 53.67 21.60