Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRAF3IP1 Gene 0 25.51 29.96 44.50 26.53 37.69 34.70 38.97 27.51 29.83 22.05 36.71 42.17 25.75 35.28 31.33 29.78 32.92 22.95 26.97 20.64 31.16 35.24 33.46 2 391993 Transcript 0 10.45 37.10 33.35 17.81 22.16 56.10 58.12 24.52 21.47 11.87 38.17 49.97 20.13 50.97 23.36 34.95 47.31 33.54 46.50 32.47 48.43 42.92 47.29 3 373327 Transcript 0 0.53 0.00 2.45 0.68 2.34 0.00 0.83 0.00 0.00 0.14 0.72 3.25 0.00 0.00 1.09 2.60 0.00 0.00 0.00 0.00 0.00 0.52 1.10 4 409739 Transcript 0 0.45 0.00 0.26 1.60 0.00 0.00 0.19 0.00 3.18 1.40 0.24 0.00 0.00 0.49 0.00 3.40 0.00 0.00 0.11 0.61 1.10 0.00 2.37 5 391994 Transcript 0 0.00 3.49 0.38 0.00 0.84 0.00 1.37 1.26 0.39 0.33 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.73 6 462122 Transcript 0 0.67 3.30 2.28 3.52 4.26 3.56 6.65 2.05 4.04 2.71 1.01 0.76 1.99 0.69 1.12 1.77 1.28 2.35 1.80 2.31 0.71 1.62 1.34 7 483951 Transcript 0 2.34 1.77 2.74 0.54 2.18 6.03 5.26 2.23 1.43 1.60 2.95 8.20 0.74 1.45 6.34 2.11 1.13 3.11 3.60 2.35 2.26 1.04 4.02 8 ER1a ExonRegion 0 0.00 0.17 0.00 0.00 0.00 1.24 1.34 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.15 0.84 0.65 0.27 1.16 0.00 1.81 0.00 2.75 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 12.80 10 E1_Ac KnownBoundary 0 0.00 3.03 0.00 0.00 0.00 19.93 10.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 18.20 8.88 8.12 21.55 0.00 24.03 0.00 32.86 11 ER1b ExonRegion 0 0.00 2.03 0.00 0.00 0.00 14.67 6.79 0.00 0.00 0.00 5.80 0.00 0.00 0.00 2.90 12.26 6.60 3.70 9.56 0.00 19.83 0.00 17.62 12 ER1c ExonRegion 0 2.36 2.20 7.49 1.91 1.27 5.15 3.19 1.86 7.01 2.91 12.42 9.04 3.33 8.54 4.69 11.12 8.71 6.69 10.07 4.97 19.10 7.40 11.90 13 E1a_E2a KnownJunction 0 3.78 6.31 33.71 10.72 7.64 12.95 5.26 7.19 24.86 5.80 30.43 24.61 25.81 26.13 16.81 27.09 22.25 37.06 23.44 11.25 31.82 18.31 37.22 14 E1b_E2a KnownJunction 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 3.36 1.61 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 3.59 15 ER1d ExonRegion 0 0.91 0.00 0.53 1.36 0.00 0.00 0.38 0.00 3.00 1.19 0.48 0.00 0.00 0.99 0.00 2.44 0.00 0.00 0.23 1.22 2.20 0.00 1.15 16 E2_Aa NovelBoundary 0 3.78 5.79 14.07 4.03 0.00 8.52 7.99 4.27 5.64 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.47 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 14.60 4.45 35.30 13.39 7.14 26.28 13.66 10.32 32.94 12.83 39.19 55.66 36.98 31.31 11.56 29.81 31.57 40.60 23.41 21.71 37.97 22.13 36.43 18 E2_Da NovelBoundary 0 3.11 0.00 8.49 3.46 3.90 0.00 3.71 2.14 3.59 4.32 0.00 0.00 0.00 0.00 0.00 0.00 4.86 6.09 18.64 3.07 0.00 0.00 4.27 19 E2a_E3a KnownJunction 0 46.67 3.35 49.79 16.75 8.06 53.49 23.36 13.23 41.81 20.52 54.65 69.47 40.26 54.33 37.46 50.84 53.02 38.39 21.18 14.70 73.33 17.39 36.28 20 E3_Aa NovelBoundary 0 20.74 8.42 4.17 3.73 0.00 10.96 8.44 6.12 6.37 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 4.14 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 37.61 18.67 58.84 23.82 17.71 37.92 35.84 23.45 47.71 25.82 50.90 73.49 38.56 53.13 37.50 34.01 66.16 32.34 23.73 29.67 65.96 40.19 41.08 22 E3a_E4a KnownJunction 0 62.46 20.79 70.34 27.94 22.67 74.90 67.79 23.04 56.37 30.25 65.07 112.69 54.22 91.65 56.00 60.07 86.58 50.16 32.28 41.80 72.28 29.64 72.56 23 E4_Aa NovelBoundary 0 9.85 12.23 9.70 10.32 0.00 0.00 16.52 16.76 9.81 1.58 0.00 6.30 0.00 2.47 0.00 3.50 3.65 3.69 0.00 5.94 3.15 0.00 3.76 24 ER4a ExonRegion 0 45.52 20.69 88.52 48.94 55.28 48.60 64.92 34.03 46.87 35.59 73.64 83.43 80.19 92.50 52.24 59.46 71.02 58.94 55.37 39.38 58.15 48.49 67.64 25 E4a_E5a KnownJunction 0 68.46 15.26 116.32 55.67 95.08 73.54 114.12 37.09 56.16 23.16 93.39 112.54 75.00 106.48 88.63 73.40 88.83 38.84 63.06 44.74 32.80 69.19 94.24 26 ER5a ExonRegion 1 49.64 29.93 99.52 54.96 73.95 55.00 69.56 39.58 47.28 38.05 63.75 97.51 88.94 81.78 59.67 52.09 76.55 49.56 65.12 39.81 72.63 47.38 63.92 27 E5a_E6a KnownJunction 1 6.67 28.02 58.84 40.79 19.86 59.11 39.30 24.03 32.00 28.72 67.39 90.03 47.07 54.86 29.42 47.51 114.26 33.45 50.54 24.03 39.29 33.43 72.13 28 ER6a ExonRegion 0 22.46 20.34 59.38 38.92 28.76 42.71 42.62 19.73 33.79 23.26 64.48 58.99 25.53 57.84 28.01 49.49 85.00 46.32 59.15 29.14 50.53 46.30 40.46 29 E6a_E7a KnownJunction 0 27.26 26.71 97.72 54.27 51.10 51.39 25.48 24.81 51.88 29.47 61.17 55.82 51.78 54.98 26.70 74.60 94.25 44.40 55.34 38.61 52.70 43.72 45.16 30 ER7a ExonRegion 0 36.04 38.13 76.01 39.31 56.75 86.31 60.80 26.50 41.67 25.08 64.29 98.38 41.16 60.01 48.86 63.82 85.95 56.23 61.78 38.80 51.24 41.86 71.83 31 E7_Da NovelBoundary 0 0.00 3.35 11.92 4.13 4.07 0.00 5.83 0.00 3.04 6.37 0.00 6.30 0.00 0.00 0.00 0.00 12.62 1.78 0.00 0.00 3.15 0.00 0.00 32 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 6.82 0.00 4.45 4.02 0.00 0.00 8.28 0.00 0.00 2.33 0.00 33 E7a_E11b KnownJunction 0 10.45 37.10 33.35 17.81 22.16 56.10 58.12 24.52 21.47 11.87 38.17 49.97 20.13 50.97 23.36 34.95 47.31 33.54 46.50 32.47 48.43 42.92 47.29 34 E8_Aa NovelBoundary 0 6.89 6.31 3.61 4.63 0.00 5.45 7.60 17.29 12.67 4.78 0.00 6.30 0.00 0.00 8.90 0.00 0.00 1.74 8.75 8.31 0.00 8.39 8.02 35 ER8a ExonRegion 0 3.97 1.08 3.94 2.13 7.16 6.93 25.18 1.24 1.97 2.71 1.87 3.97 4.84 0.66 1.27 0.50 3.51 2.08 4.15 4.37 0.07 2.37 4.83 36 E8_Da NovelBoundary 0 3.56 3.22 7.13 12.62 8.15 5.56 37.23 5.79 6.31 1.05 0.00 6.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 5.82 0.00 3.12 0.00 37 E8a_E9a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 I8_SR1 SilentIntronRegion 0 2.08 3.95 3.72 7.69 4.61 3.05 16.52 8.02 6.51 2.24 0.00 4.22 1.01 0.81 1.40 0.00 0.63 1.52 3.22 4.05 0.07 2.39 3.76 39 ER9a ExonRegion 0 2.61 22.13 8.01 2.06 10.34 2.05 13.51 6.08 3.57 2.44 0.27 1.78 0.00 1.34 2.05 1.60 0.00 5.24 4.78 5.49 3.26 1.10 10.02 40 E9_Da NovelBoundary 0 0.00 23.02 4.94 3.36 3.48 5.34 12.14 3.74 3.27 7.28 4.32 0.00 0.00 0.00 0.00 0.00 4.49 6.43 0.00 0.00 0.00 0.00 7.60 41 E9a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E9_Db NovelBoundary 0 0.00 5.33 5.50 0.00 7.81 0.00 30.87 1.64 12.09 0.00 0.00 0.00 0.00 0.00 0.00 7.95 8.60 5.14 0.00 11.44 5.56 5.39 3.67 43 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER9b ExonRegion 0 0.00 12.43 1.23 0.00 2.68 0.00 4.71 3.46 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 2.94 45 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER10a ExonRegion 0 0.00 1.53 0.31 0.00 0.67 0.00 0.77 1.58 0.31 0.19 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 47 ER11a ExonRegion 0 1.34 6.59 4.56 7.04 8.53 7.12 13.30 4.09 8.09 5.42 2.02 1.52 3.99 1.38 2.23 3.55 2.56 4.70 3.61 4.62 1.43 3.24 2.68 48 E11a_E12a KnownJunction 0 16.30 21.44 21.20 10.06 32.09 32.31 10.55 5.63 16.29 10.29 53.80 44.41 0.00 25.66 9.52 56.82 44.60 22.97 19.95 17.45 58.81 18.68 21.60 49 ER11b ExonRegion 1 12.91 32.84 33.21 22.96 24.88 54.10 41.70 26.70 26.80 16.80 65.91 54.77 13.37 46.61 15.38 57.96 58.10 41.57 34.40 32.66 65.01 31.67 36.41 50 E12_Aa NovelBoundary 0 3.78 25.19 6.33 9.66 12.65 0.00 8.88 10.35 3.59 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 2.68 2.66 0.00 0.00 51 ER12a ExonRegion 0 29.03 33.04 45.43 29.71 31.98 39.67 42.76 35.24 31.60 23.71 62.69 60.61 20.91 53.58 26.18 62.06 61.24 46.11 29.98 20.15 74.67 40.37 40.94 52 E12a_E13a KnownJunction 1 50.08 44.93 73.12 28.70 40.32 37.36 59.18 45.63 46.73 26.67 95.39 43.81 0.00 64.16 18.30 68.44 54.60 53.64 49.98 23.27 96.25 30.86 51.99 53 ER13a ExonRegion 1 33.97 54.76 57.96 25.72 41.63 48.09 42.82 32.74 41.41 22.11 52.76 64.79 13.01 59.94 34.64 42.14 49.00 50.22 47.36 27.81 66.90 29.94 51.32 54 E13_Da NovelBoundary 0 5.56 3.22 17.15 0.00 3.82 0.00 4.28 4.60 2.43 1.42 0.00 0.00 0.00 2.24 0.00 0.00 0.00 2.28 0.00 3.26 0.00 0.00 0.00 55 E13a_E14a KnownJunction 1 6.52 32.69 55.76 33.20 45.50 27.20 49.77 28.22 33.80 19.58 18.00 68.27 13.15 56.15 67.25 41.95 57.04 31.34 43.30 37.78 55.91 39.37 78.02 56 ER14a ExonRegion 0 18.42 30.72 59.76 30.50 47.26 57.97 38.59 35.67 43.43 26.43 56.90 54.85 22.66 60.24 33.11 42.40 53.83 26.45 41.56 19.97 47.20 36.53 40.73 57 E14a_E15a KnownJunction 0 39.71 36.11 42.25 22.04 33.87 91.03 52.24 23.41 31.65 22.83 60.91 55.37 19.80 58.92 41.29 24.18 53.30 19.77 58.45 46.21 48.68 20.08 32.27 58 ER15a ExonRegion 1 23.85 38.86 41.70 30.72 25.60 52.59 40.94 34.52 28.41 22.91 65.82 35.69 20.15 59.48 21.48 58.40 61.82 23.62 47.78 37.49 44.49 29.45 53.49 59 E15a_E16a KnownJunction 0 25.26 49.93 36.19 31.10 42.28 31.18 43.94 39.02 23.06 20.95 75.18 40.06 35.39 73.58 35.85 89.98 67.51 23.01 40.75 26.78 22.98 30.86 88.01 60 ER16a ExonRegion 0 17.84 38.22 45.63 29.66 45.21 38.89 43.28 29.99 33.57 24.96 55.63 73.43 22.41 50.45 39.56 52.38 47.67 22.56 33.43 26.39 44.45 48.30 52.13 61 E16_Da NovelBoundary 0 3.70 29.01 3.61 1.43 11.29 5.00 14.18 3.37 1.39 0.00 9.48 0.00 0.00 9.36 0.00 4.36 4.30 4.52 12.33 5.82 0.00 9.31 0.00 62 E16a_E17b KnownJunction 0 8.59 19.73 51.62 22.34 49.15 50.31 55.56 22.10 29.89 29.04 45.54 82.68 40.26 59.39 38.82 39.14 48.99 16.25 24.19 17.00 36.82 37.17 28.00 63 I16_AR1 ActiveIntronRegion 0 6.71 6.62 12.95 5.59 1.99 6.36 8.93 10.33 9.63 4.82 0.00 1.89 0.82 1.03 3.60 6.61 3.79 6.60 6.24 6.77 5.60 1.49 4.62 64 E17_Aa NovelBoundary 0 0.00 6.71 12.48 1.96 0.00 18.63 8.21 2.05 1.79 1.67 2.00 0.00 0.00 0.00 0.00 0.00 4.49 7.01 0.00 3.26 0.00 0.00 0.00 65 ER17a ExonRegion 0 2.34 1.77 2.74 0.54 2.18 6.03 5.26 2.23 1.43 1.60 2.95 8.20 0.74 1.45 6.34 2.11 1.13 3.11 3.60 2.35 2.26 1.04 4.02 66 E17_Ab KnownBoundary 0 3.41 3.35 6.50 2.06 3.65 8.35 8.74 5.01 3.59 1.64 2.42 12.60 0.00 0.00 15.70 6.49 0.00 10.99 4.71 3.00 5.68 0.00 7.94 67 ER17b ExonRegion 1 22.27 22.46 56.42 26.23 35.00 41.26 30.96 37.05 30.47 23.43 46.94 39.54 6.44 42.77 40.91 42.83 35.41 37.86 26.63 26.40 54.82 36.76 42.18 68 E17a_E18a KnownJunction 0 11.11 31.77 35.63 15.82 16.55 38.61 39.30 21.93 23.55 14.91 48.59 38.11 0.00 47.03 30.66 28.80 34.60 35.03 30.59 26.14 32.68 19.04 57.53 69 ER17c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER18a ExonRegion 0 17.91 50.18 48.62 40.91 37.58 40.90 41.36 42.52 36.52 22.09 51.13 34.10 10.33 37.39 40.82 31.90 26.01 32.95 24.49 20.28 30.61 48.87 38.51 71 E18_Da KnownBoundary 0 22.23 50.45 52.90 45.22 41.09 50.20 62.23 43.21 27.69 28.96 24.16 57.32 34.09 28.96 4.45 14.36 22.35 21.60 11.01 21.48 17.73 52.54 31.16 72 ER18b ExonRegion 0 31.38 41.95 42.81 27.90 47.55 37.67 45.88 34.08 32.83 26.42 33.35 37.44 22.68 28.15 35.74 26.61 24.26 14.78 23.11 20.20 19.55 44.85 31.40 73 E18_Db KnownBoundary 0 39.34 27.10 44.32 25.24 8.32 13.23 20.27 28.30 16.64 20.74 7.79 6.30 6.01 2.47 4.45 7.35 11.41 2.57 8.38 12.91 6.30 39.07 3.59 74 ER18c ExonRegion 0 12.10 15.17 21.59 13.22 11.35 7.71 11.92 13.34 7.34 9.10 7.37 14.10 7.99 3.69 6.82 7.75 3.12 0.82 3.23 4.20 1.43 19.03 2.34 75 ER18d ExonRegion 0 1.06 0.00 4.90 1.36 4.68 0.00 1.65 0.00 0.00 0.29 1.45 6.49 0.00 0.00 2.18 5.20 0.00 0.00 0.00 0.00 0.00 1.04 2.20 76 IG47_AR1 ActiveIntergenicRegion 0 12.70 7.82 18.38 9.85 10.29 20.17 19.55 6.51 8.17 3.97 1.93 4.33 0.00 2.50 1.56 0.00 6.60 1.85 3.19 6.38 2.20 3.69 5.42 77 IG47_AR2 ActiveIntergenicRegion 0 7.79 7.64 14.05 7.82 13.80 11.57 7.98 9.34 7.07 7.94 5.22 1.13 0.00 3.14 5.09 3.14 3.31 6.39 8.23 4.21 6.99 3.56 4.50