Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 COPS8 Gene 0 84.84 139.20 155.20 122.88 110.48 235.66 136.56 101.29 111.47 112.05 121.90 120.15 101.86 99.94 104.62 72.13 92.57 80.99 88.68 107.99 90.68 162.70 80.36 2 433954 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 354371 Transcript 1 10.88 35.28 23.05 33.07 30.27 45.84 31.04 21.96 35.64 22.71 8.75 34.95 23.80 9.48 8.21 6.32 5.80 7.20 9.88 24.77 4.07 17.26 8.83 4 392008 Transcript 0 2.64 4.45 2.57 2.62 4.28 1.46 2.61 5.13 16.27 3.70 12.46 0.02 7.32 11.41 8.05 4.07 7.78 7.50 22.25 5.75 24.54 15.36 9.93 5 409334 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 470452 Transcript 0 12.56 9.41 12.60 17.41 16.92 18.91 15.87 10.54 10.08 5.57 7.97 9.13 5.10 3.14 2.17 3.54 7.52 6.79 3.23 4.31 6.69 19.76 10.31 7 419015 Transcript 0 7.53 3.98 7.16 2.09 14.78 8.15 14.80 4.88 1.84 0.72 2.09 3.45 1.97 2.66 1.96 3.71 2.24 3.57 3.84 5.27 1.67 10.27 1.12 8 409629 Transcript 0 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 447464 Transcript 0 3.04 6.05 7.98 15.85 11.04 9.43 12.23 6.12 2.95 9.54 14.27 23.86 18.18 9.36 0.00 12.73 7.48 12.31 7.62 20.20 3.15 0.00 4.18 10 465362 Transcript 0 4.20 3.04 8.25 2.64 2.60 4.38 6.15 2.31 3.79 5.95 3.61 5.37 1.55 3.58 3.02 2.21 3.62 5.68 3.01 3.99 4.06 3.41 1.80 11 ER1a ExonRegion 0 0.04 0.01 0.34 0.36 0.00 0.33 0.35 0.46 0.00 0.16 0.00 0.00 0.00 0.06 0.55 0.27 0.00 0.00 0.11 0.57 0.87 0.00 0.26 12 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 3.00 0.00 15 E1_Ae KnownBoundary 0 34.30 85.25 4.67 0.00 64.01 238.44 129.84 2.38 0.00 3.12 26.90 0.00 0.00 30.26 40.79 21.36 40.11 16.46 36.80 31.58 34.47 16.41 20.91 16 ER1b ExonRegion 0 2.12 4.07 2.45 0.00 0.00 3.67 0.00 0.00 0.00 2.29 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.85 6.37 0.00 6.61 0.00 0.00 17 ER1c ExonRegion 0 2.12 6.10 2.45 0.00 0.00 6.42 0.00 0.00 0.00 2.29 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.85 6.37 0.00 6.61 0.00 0.00 18 ER1d ExonRegion 0 15.09 44.12 8.42 4.33 29.78 107.88 56.41 1.35 6.01 9.03 15.13 0.00 0.00 17.51 16.27 9.82 22.96 4.26 23.27 16.10 31.62 13.41 11.24 19 ER1e ExonRegion 1 213.58 419.93 24.00 17.00 208.94 739.56 399.14 5.08 16.27 28.03 154.18 3.69 23.04 191.60 292.00 220.46 218.93 42.93 205.92 171.34 309.62 261.48 215.15 20 E1_Af KnownBoundary 1 659.67 1087.96 224.59 203.00 495.67 1711.29 805.93 129.84 145.54 166.73 382.25 12.15 53.73 399.79 679.15 631.89 491.54 263.98 518.98 390.34 650.39 678.77 627.42 21 ER1f ExonRegion 1 97.89 183.17 44.56 27.55 80.98 287.02 136.14 17.77 28.91 44.36 102.03 9.80 19.28 86.85 122.53 106.37 129.87 44.76 99.94 78.12 176.74 131.32 122.81 22 E1a_E2a KnownJunction 0 3.78 2.89 0.00 1.50 3.99 0.00 0.00 1.81 6.68 3.30 7.05 0.00 0.00 2.47 0.00 0.00 4.21 1.99 4.05 2.75 14.46 0.00 0.00 23 E1a_E3a KnownJunction 1 60.31 78.93 126.19 70.55 28.69 77.34 34.71 45.51 75.49 122.03 147.56 11.85 14.12 61.39 30.16 39.39 131.00 76.19 81.41 70.05 229.94 69.68 60.69 24 ER2a ExonRegion 0 4.14 4.13 3.20 2.87 4.53 4.37 5.58 7.13 15.43 3.74 20.55 0.07 14.50 12.97 10.80 7.86 10.72 10.86 17.99 14.50 36.48 13.37 9.04 25 E2a_E3a KnownJunction 0 0.00 6.31 4.49 3.50 4.33 0.00 2.25 6.45 26.71 4.06 9.79 0.00 7.47 18.78 13.35 4.36 8.42 9.66 44.71 0.00 22.67 32.70 20.74 26 ER3a ExonRegion 1 46.65 78.28 276.16 186.68 44.62 117.60 39.85 178.23 219.35 259.73 571.84 53.11 35.60 251.40 176.69 257.74 460.27 283.36 304.00 313.99 470.54 349.41 262.40 27 E3a_E4a KnownJunction 0 0.00 3.16 1.48 0.00 0.00 0.00 0.00 2.51 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.26 0.00 5.02 0.00 28 E3a_E5a KnownJunction 1 92.68 154.45 414.03 334.06 118.85 245.09 69.60 308.71 295.08 359.12 592.15 75.02 93.83 701.58 570.12 939.07 520.43 538.73 1089.35 513.51 309.20 942.57 1075.58 29 ER4a ExonRegion 0 22.58 8.79 11.07 6.28 32.46 16.43 29.29 7.50 5.51 0.48 4.33 10.35 5.91 7.97 5.89 6.78 6.73 5.12 7.10 10.13 1.85 23.23 3.35 30 E4a_E5a KnownJunction 0 0.00 0.00 8.93 0.00 11.88 8.01 15.10 4.64 0.00 1.67 0.00 0.00 0.00 0.00 0.00 4.36 0.00 3.56 4.42 2.43 3.15 2.57 0.00 31 I4 Intron 0 24.19 22.95 10.17 14.29 18.61 17.87 33.18 15.29 10.93 10.77 5.67 13.27 14.60 7.43 4.21 9.80 6.05 3.64 7.47 9.20 9.85 23.52 5.16 32 I4_SR1 SilentIntronRegion 0 26.76 25.19 11.40 16.01 19.78 18.38 36.15 16.94 12.19 12.05 5.49 14.12 15.84 7.91 4.49 10.80 6.47 4.08 8.36 9.87 10.26 26.09 5.52 33 E5_Aa NovelBoundary 0 47.27 36.31 5.71 36.73 53.23 21.41 58.52 29.16 25.90 15.88 6.63 6.30 15.42 25.72 10.75 15.55 23.94 0.00 3.95 15.15 24.77 22.23 11.44 34 ER5a ExonRegion 1 108.07 224.32 325.87 281.51 246.00 351.42 159.88 246.00 259.10 296.42 467.33 121.58 100.40 453.20 530.34 680.86 352.45 543.16 671.72 385.63 323.81 627.69 782.71 35 E5a_E6a KnownJunction 1 119.58 302.71 235.36 219.42 439.39 611.30 318.15 168.20 221.41 224.14 405.52 125.29 103.40 258.87 279.62 294.37 287.05 376.73 257.61 344.00 373.81 323.68 324.98 36 E5a_E7b NovelJunction 0 6.45 0.00 10.82 6.76 3.57 5.17 20.80 6.04 19.39 1.45 4.53 0.00 0.00 6.53 11.50 7.60 3.74 4.85 0.00 0.00 0.00 3.12 7.85 37 ER6a ExonRegion 0 124.11 457.30 272.85 194.88 372.65 1108.04 442.85 183.16 237.96 257.43 395.29 188.80 145.71 296.65 208.98 209.72 298.89 389.06 232.56 289.84 390.69 322.21 207.22 38 E6a_E7a KnownJunction 0 3.11 0.00 1.83 5.36 0.00 7.61 5.70 0.00 3.36 0.00 2.26 6.00 0.00 0.00 0.00 0.00 4.77 1.58 0.00 0.00 2.59 11.63 8.19 39 E6a_E7b KnownJunction 0 355.69 702.44 387.54 305.66 165.62 484.27 207.03 229.32 267.53 292.53 441.32 337.91 219.95 437.76 293.34 313.85 422.72 642.15 356.06 435.60 488.84 414.61 422.38 40 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER7a ExonRegion 0 22.01 18.82 23.36 29.47 33.84 30.21 26.04 21.08 16.80 11.14 13.67 12.25 10.19 6.27 4.35 7.08 10.27 12.01 6.45 8.61 10.79 27.89 12.43 42 E7_Ab KnownBoundary 0 36.23 15.98 29.36 25.17 60.19 52.02 35.24 8.54 15.54 10.42 12.21 0.00 12.82 9.71 9.77 8.63 16.08 7.83 24.19 12.78 14.64 32.09 34.57 43 ER7b ExonRegion 0 263.27 469.84 457.14 345.53 225.04 450.55 262.31 238.42 291.51 325.58 417.39 291.31 142.04 477.89 348.51 395.47 388.16 596.71 465.78 397.35 500.42 616.21 441.58 44 E7_Ac KnownBoundary 1 284.42 462.94 542.17 405.04 298.05 613.17 359.62 256.01 308.27 350.04 423.58 319.30 97.07 449.53 392.11 383.49 436.93 536.41 481.71 404.21 555.69 704.00 439.79 45 ER7c ExonRegion 0 192.87 335.71 525.94 326.74 258.47 519.71 318.79 285.08 316.71 368.40 487.67 278.65 164.15 408.76 328.89 266.73 419.85 318.56 332.02 347.58 621.59 435.85 261.05 46 E7_Da NovelBoundary 1 107.06 122.35 47.40 40.25 144.06 178.48 130.10 43.66 45.86 65.09 193.73 54.47 24.02 143.51 89.50 49.73 130.43 37.68 62.03 145.73 225.98 118.92 46.10 47 E7b_E8a KnownJunction 0 287.46 332.05 549.18 252.35 216.98 403.46 241.57 328.55 320.89 323.20 397.36 236.33 186.03 365.94 304.35 194.31 343.15 293.57 249.04 344.64 513.86 410.57 196.76 48 E7b_E8b KnownJunction 0 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER7d ExonRegion 0 220.12 278.97 507.75 252.51 232.79 431.78 264.91 304.84 318.10 346.78 459.33 224.35 153.49 388.76 284.32 187.78 374.80 254.65 231.08 338.30 580.18 380.91 175.40 50 E8_Ab NovelBoundary 0 122.98 175.23 198.84 87.17 122.50 257.86 135.09 121.99 141.09 109.01 202.89 111.04 50.48 187.65 146.73 97.32 187.19 138.25 174.41 165.80 276.45 277.88 121.30 51 ER8a ExonRegion 0 231.97 306.26 489.29 238.91 229.58 427.09 240.30 310.08 319.40 329.05 450.95 237.25 169.31 405.22 327.26 188.43 384.55 285.85 289.23 340.00 576.05 467.75 205.86 52 ER8b ExonRegion 0 212.37 378.33 484.32 251.64 242.85 559.24 300.04 303.31 305.44 324.94 495.29 319.51 201.86 484.18 363.24 264.99 405.09 431.56 286.68 362.98 580.02 473.88 274.34 53 E8b_E9b KnownJunction 0 253.82 455.84 464.65 283.68 253.14 733.10 404.57 271.09 263.89 326.43 425.27 249.83 248.20 501.21 379.13 300.78 341.56 451.59 265.89 359.47 582.07 538.49 245.50 54 ER8c ExonRegion 0 191.19 406.04 602.88 372.52 222.98 614.93 345.55 332.44 374.24 390.33 444.57 269.87 225.12 507.27 328.81 315.05 369.70 714.46 259.08 364.54 595.00 481.99 256.47 55 ER9a ExonRegion 0 4.20 3.04 8.25 2.64 2.60 4.38 6.15 2.31 3.79 5.95 3.61 5.37 1.55 3.58 3.02 2.21 3.62 5.68 3.01 3.99 4.06 3.41 1.80 56 E9_Ab KnownBoundary 0 3.11 2.83 14.04 0.00 0.00 0.00 0.00 0.00 1.16 1.61 0.00 5.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER9b ExonRegion 0 311.76 431.98 631.30 393.67 258.35 778.74 407.05 332.45 380.42 406.74 561.57 346.45 265.34 553.10 407.53 434.37 484.53 729.43 509.73 382.03 605.97 694.61 461.93 58 E9a_E10a KnownJunction 0 555.43 529.18 565.27 387.30 368.85 999.59 570.71 331.30 390.65 390.84 686.96 396.88 344.13 559.72 584.83 556.09 567.83 622.34 682.28 402.87 581.70 773.01 668.65 59 ER10a ExonRegion 0 417.09 395.81 455.89 309.88 287.49 733.17 410.74 338.95 310.54 361.49 440.15 285.00 272.66 376.04 345.48 241.23 318.16 315.52 261.52 326.03 354.59 522.86 252.74 60 E10_Da KnownBoundary 0 660.12 494.91 569.02 393.26 447.79 1033.50 557.55 408.89 358.16 378.65 360.09 455.85 269.63 391.31 415.97 213.19 283.96 157.85 174.03 282.90 209.43 616.44 253.53 61 E10a_E10b KnownJunction 0 3.04 6.05 7.98 15.85 11.04 9.43 12.23 6.12 2.95 9.54 14.27 23.86 18.18 9.36 0.00 12.73 7.48 12.31 7.62 20.20 3.15 0.00 4.18 62 ER10b ExonRegion 0 327.70 495.49 495.90 391.40 439.27 1113.05 666.51 374.14 388.93 392.01 251.73 381.29 331.24 294.86 341.99 158.52 159.70 100.75 190.32 293.21 89.53 635.54 157.93 63 E10_Db KnownBoundary 0 291.83 502.21 546.76 513.45 1024.28 1866.88 980.81 422.20 414.41 394.04 207.21 328.76 290.89 220.08 319.80 88.35 143.90 62.68 125.37 292.74 69.81 464.70 85.79 64 ER10c ExonRegion 0 205.12 362.97 562.22 466.97 374.55 721.85 433.10 402.52 415.39 430.30 354.78 546.54 489.33 296.39 348.53 190.84 242.67 153.47 246.47 315.56 139.29 596.53 205.53 65 E10_Dc KnownBoundary 1 389.85 472.94 730.43 611.08 301.53 655.13 462.96 549.53 510.82 595.07 327.66 648.96 383.42 247.04 348.11 126.89 232.91 270.86 178.45 267.49 157.72 636.40 158.35 66 ER10d ExonRegion 0 257.37 383.19 480.16 358.51 285.05 548.72 345.19 268.58 264.04 281.20 285.99 365.84 335.37 193.61 290.32 119.99 204.19 118.08 188.65 261.67 136.14 393.79 154.72 67 E10_Dd KnownBoundary 1 115.21 159.38 174.12 106.71 53.65 156.61 98.62 88.43 109.95 134.52 83.81 123.79 116.06 35.79 127.70 19.82 61.71 26.90 52.99 98.24 28.79 87.56 28.00 68 ER10e ExonRegion 0 88.63 123.73 149.80 86.56 70.46 120.97 76.84 82.84 91.94 106.26 78.44 103.60 98.74 52.00 89.63 24.35 39.03 20.78 51.02 84.43 33.56 98.47 32.41 69 E10_De KnownBoundary 1 116.69 111.76 97.28 44.58 70.03 127.71 97.29 58.90 49.25 60.73 48.91 122.74 78.24 20.60 55.38 20.17 28.89 5.60 38.40 60.02 31.14 107.16 49.00 70 E10_Df KnownBoundary 0 6.67 25.19 6.09 9.26 28.27 23.62 1.85 17.62 12.30 19.39 2.26 30.31 6.82 4.83 5.69 0.00 4.77 0.00 4.80 17.96 2.97 2.63 0.00 71 ER10f ExonRegion 1 54.50 77.78 88.99 47.87 55.19 79.08 55.94 55.31 57.28 65.09 33.83 101.20 39.87 35.53 58.75 14.86 18.15 6.01 24.69 60.64 21.49 56.26 18.72 72 ER10g ExonRegion 1 6.58 28.28 16.93 20.22 28.79 47.93 27.07 21.82 29.33 21.88 3.99 25.06 11.78 6.91 7.87 3.96 1.55 3.82 5.21 19.81 2.44 10.58 4.20 73 E10_Ab KnownBoundary 0 3.19 29.67 15.64 14.28 11.04 62.69 22.43 20.58 29.40 18.88 2.00 18.76 6.66 7.71 4.45 0.00 0.00 4.10 0.00 14.51 0.00 16.59 0.00 74 ER10h ExonRegion 1 9.32 25.94 21.48 34.06 23.24 48.00 33.03 21.50 37.17 19.35 16.13 39.04 18.28 16.91 10.77 12.15 6.53 11.03 10.61 33.78 5.77 28.29 8.60 75 E10_Dg KnownBoundary 0 32.45 35.52 18.07 41.89 25.98 39.35 42.71 11.95 42.51 15.12 14.06 44.11 6.82 17.19 0.00 3.50 0.00 0.00 18.35 20.96 6.18 29.88 0.00 76 ER10i ExonRegion 1 15.17 42.28 29.17 45.92 31.75 43.75 35.01 22.10 41.94 23.55 13.52 44.83 35.82 12.05 8.56 8.69 10.05 10.57 14.55 29.72 5.69 23.94 13.47