Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NHEJ1 Gene 0 4.44 5.14 3.92 3.80 2.50 6.83 6.30 2.45 2.20 3.11 7.01 0.99 2.53 3.34 6.05 4.88 4.87 8.08 4.96 5.69 4.77 2.91 3.47 2 450447 Transcript 0 1.14 0.00 0.00 0.73 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.33 0.00 0.64 0.00 3 356853 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 415353 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 418099 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 481764 Transcript 0 1.69 0.61 2.54 1.31 1.33 1.00 1.65 0.90 0.28 1.62 1.44 0.53 3.20 0.71 0.88 0.44 0.00 0.50 1.57 1.48 1.87 1.66 2.63 7 457600 Transcript 0 8.89 7.75 2.72 0.93 2.60 24.20 4.97 1.19 3.81 3.79 11.72 0.00 0.00 3.00 8.10 4.81 5.82 21.03 6.77 16.71 15.99 1.59 7.46 8 409720 Transcript 0 1.59 2.03 3.68 1.36 0.00 3.21 0.99 0.00 1.24 0.86 0.00 1.08 0.00 6.50 0.00 2.97 0.00 0.46 2.39 4.79 0.00 2.08 0.00 9 426304 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 483627 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 491159 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 494211 Transcript 0 0.70 0.00 0.00 0.00 0.44 0.30 1.10 0.43 0.30 0.57 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.31 0.00 1.41 0.73 0.00 0.49 13 ER1a ExonRegion 0 2.28 0.00 0.00 1.47 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.65 0.00 1.28 0.00 14 ER1b ExonRegion 0 9.74 5.87 0.28 3.15 3.44 10.01 14.98 1.63 2.33 1.34 3.04 0.12 0.00 2.60 4.48 5.94 5.28 10.24 3.37 12.46 4.91 3.63 5.96 15 E1_Ac KnownBoundary 0 18.08 19.14 0.00 4.06 4.33 14.14 28.22 0.00 0.00 1.67 5.26 0.00 0.00 2.12 6.30 3.93 9.35 7.42 3.95 21.86 6.30 6.06 8.11 16 E1_Ad KnownBoundary 0 35.19 97.88 6.09 5.29 74.02 115.22 109.08 8.79 11.46 4.03 78.97 11.70 0.00 43.56 48.09 79.12 85.83 36.73 143.06 62.57 52.26 33.68 37.39 17 ER1c ExonRegion 0 24.34 60.09 13.11 25.15 42.28 73.63 75.53 13.57 16.49 15.02 54.80 4.33 0.00 29.96 35.40 56.02 57.93 61.44 79.95 54.89 41.43 24.48 29.37 18 ER1d ExonRegion 0 48.09 71.12 22.40 36.80 55.00 98.82 94.19 24.25 23.36 23.10 98.85 2.53 0.00 44.17 65.52 82.23 79.77 86.54 91.14 63.42 64.34 34.20 35.24 19 E1_Ae KnownBoundary 0 96.09 45.19 25.63 50.04 31.49 67.01 79.89 25.59 26.01 28.04 112.08 0.00 0.00 46.91 106.56 83.06 67.60 91.86 53.37 48.77 66.97 35.82 35.94 20 ER1e ExonRegion 0 44.80 30.12 29.88 41.47 16.56 60.78 49.81 32.14 21.82 26.00 82.79 2.99 9.38 27.26 59.68 47.48 54.54 86.45 36.56 33.03 38.20 26.89 23.14 21 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E1a_E4a KnownJunction 0 8.74 17.17 28.44 37.19 7.89 17.49 10.42 37.38 17.48 20.25 21.90 12.60 6.33 9.36 28.80 10.00 3.46 62.18 16.75 12.78 11.43 5.51 19.38 23 ER2a ExonRegion 0 4.14 3.01 1.81 0.03 1.05 7.73 1.81 0.53 1.80 2.29 5.59 0.00 0.00 1.41 6.31 1.42 3.23 11.01 4.22 7.22 7.76 0.54 3.06 24 E2a_E4a KnownJunction 0 13.63 12.50 3.64 1.83 4.16 40.66 8.13 1.85 5.82 5.29 17.85 0.00 0.00 4.59 9.89 8.20 8.42 31.05 9.32 26.21 24.22 2.63 11.87 25 ER3a ExonRegion 0 3.37 1.22 5.08 2.63 2.67 2.01 3.30 1.79 0.55 3.23 2.89 1.07 6.40 1.42 1.75 0.89 0.00 1.01 3.15 2.97 3.73 3.32 5.27 26 E3_Da NovelBoundary 0 0.00 0.00 0.00 4.13 0.00 23.00 1.77 6.82 0.00 3.60 4.37 0.00 6.17 2.47 5.81 0.00 0.00 0.00 4.71 6.20 0.00 2.33 0.00 27 ER4a ExonRegion 0 2.12 4.48 20.85 26.70 0.91 8.76 3.47 18.38 17.55 23.18 67.30 2.92 3.32 21.40 29.09 27.80 47.91 57.88 37.18 40.41 43.77 18.29 18.99 28 E4_Da KnownBoundary 0 0.00 0.00 38.56 36.43 8.06 2.21 3.36 26.99 12.64 25.01 22.37 0.00 0.00 27.37 89.99 69.47 20.76 105.33 67.77 51.96 20.02 32.70 40.38 29 E4a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER4b ExonRegion 0 0.00 0.00 20.53 24.00 1.95 6.61 5.82 16.24 7.97 12.72 9.72 0.00 4.26 12.70 55.83 38.01 2.60 85.44 30.98 31.85 9.22 15.22 21.80 31 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5a ExonRegion 0 0.00 10.10 2.32 4.07 13.80 52.46 50.60 4.48 1.58 2.13 0.39 0.00 5.06 2.77 10.79 5.67 0.00 38.63 3.53 5.15 0.38 1.82 10.42 33 E5_Ab KnownBoundary 0 2.96 39.93 0.00 3.66 4.24 116.64 106.26 0.00 1.39 4.08 4.63 0.00 0.00 0.00 0.00 8.29 0.00 19.11 0.00 3.26 0.00 0.00 3.93 34 ER5b ExonRegion 0 1.03 29.26 0.00 0.00 2.26 61.46 45.76 0.00 0.31 0.09 0.00 0.00 0.22 0.00 0.00 0.00 0.00 3.98 0.00 0.93 0.00 0.00 0.64 35 E5_Ac KnownBoundary 0 12.89 35.72 1.45 1.50 0.00 37.31 33.08 0.00 1.74 1.48 14.32 0.00 0.00 0.00 5.93 0.00 3.74 28.23 12.71 8.69 0.00 0.00 4.35 36 ER5c ExonRegion 0 25.30 30.38 0.00 0.00 1.13 13.89 10.30 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER6a ExonRegion 0 17.27 4.33 0.47 0.15 1.27 0.67 1.36 0.00 0.15 0.57 0.47 0.00 2.02 0.28 0.00 1.24 0.00 1.85 0.00 0.00 0.06 0.00 0.34 39 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER7a ExonRegion 0 6.61 0.00 2.95 2.26 0.00 2.52 0.00 0.59 2.32 1.18 2.23 0.00 4.69 5.08 0.00 4.09 0.00 1.85 0.00 0.00 2.20 0.00 2.94 41 E7_Da NovelBoundary 0 6.59 3.35 5.80 4.43 0.00 5.56 5.96 1.56 5.06 1.42 14.27 11.40 0.00 9.30 0.00 0.00 0.00 4.44 13.37 2.88 2.84 0.00 0.00 42 E7b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E7b_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER7b ExonRegion 0 1.10 0.00 2.45 4.09 0.00 3.67 0.00 1.73 2.47 1.15 1.93 0.00 2.43 4.03 0.00 0.00 1.22 1.85 0.00 0.39 1.22 0.00 0.33 45 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER8b ExonRegion 0 1.79 0.06 0.00 0.00 0.00 0.52 1.12 1.37 0.52 0.00 0.00 0.79 0.93 0.32 0.58 0.00 1.86 0.78 0.90 4.22 0.62 0.00 0.00 47 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E8a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER9a ExonRegion 0 1.40 0.00 0.00 0.00 0.89 0.61 2.19 0.85 0.61 1.13 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.61 0.00 2.82 1.46 0.00 0.97 50 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER11a ExonRegion 0 0.15 1.71 3.46 1.28 1.66 0.07 0.81 0.66 1.20 2.92 2.94 0.78 1.50 1.17 0.00 2.08 1.35 1.66 0.00 2.55 0.62 0.00 0.29 54 E11_Da KnownBoundary 0 7.04 3.09 12.18 1.66 8.66 5.34 4.37 2.01 3.59 13.46 10.21 6.30 0.00 2.06 0.00 4.36 4.68 6.34 8.47 0.00 3.03 0.00 0.00 55 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER11b ExonRegion 0 2.12 10.96 10.55 2.80 5.35 0.51 6.62 1.73 2.47 5.73 6.44 9.14 14.59 5.32 5.80 18.16 0.00 6.88 0.00 4.26 5.63 0.00 4.24 57 E11c_E12a KnownJunction 0 8.82 20.39 10.17 7.09 0.00 2.90 11.08 2.55 1.24 1.29 5.00 18.31 43.18 8.83 12.11 18.97 4.30 6.92 0.00 5.05 5.56 0.00 7.68 58 ER11c ExonRegion 0 4.80 12.20 10.37 5.18 0.71 1.83 9.53 1.73 2.31 3.13 7.35 10.39 23.45 7.47 5.80 18.43 3.30 7.76 0.00 6.52 6.61 0.56 5.87 59 ER12a ExonRegion 0 2.83 2.22 4.16 2.23 0.00 0.63 1.66 0.62 0.21 1.38 4.04 2.77 3.70 1.99 0.88 2.65 1.00 2.38 0.00 3.84 1.65 0.82 0.89 60 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E12a_E13b KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER13a ExonRegion 0 0.19 0.18 4.90 0.00 0.00 0.33 0.00 0.00 0.22 2.29 5.80 0.00 0.00 0.30 0.00 2.97 0.00 1.85 0.00 4.26 4.41 0.00 0.00 63 ER13b ExonRegion 0 1.14 0.03 2.71 0.51 0.00 2.46 0.00 0.00 2.47 1.37 1.88 4.78 0.00 1.33 3.55 7.45 0.00 0.74 0.00 1.24 0.82 1.15 2.24 64 E13_Da KnownBoundary 0 9.63 2.83 4.41 5.33 7.81 16.13 0.00 5.05 6.13 2.82 7.37 17.26 0.00 2.35 16.19 0.00 3.93 6.67 4.14 5.69 2.47 5.27 15.88 65 ER13c ExonRegion 0 0.00 0.00 0.51 1.20 0.00 0.00 0.16 0.00 0.17 0.00 0.00 0.75 0.00 0.00 1.00 0.15 0.00 0.80 0.00 0.92 0.00 0.50 0.00 66 E13_Db KnownBoundary 0 0.00 0.00 0.00 1.76 4.16 2.67 0.00 1.73 0.00 0.00 2.63 0.00 0.00 0.00 6.06 4.36 0.00 8.21 0.00 0.00 0.00 0.00 0.00 67 E13_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E13_Dd KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 2.78 2.21 0.00 0.00 0.00 2.58 0.00 0.00 2.35 0.00 8.03 4.68 2.45 0.00 0.00 0.00 3.12 0.00 69 E13_De KnownBoundary 0 0.00 0.00 1.77 4.99 0.00 0.00 6.27 0.00 2.37 3.17 12.27 5.85 7.47 0.00 0.00 4.10 0.00 5.80 8.94 3.26 2.53 0.00 0.00 70 ER13d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 71 ER13e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 72 ER13f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 73 ER13g ExonRegion 0 1.17 2.76 1.65 1.03 0.79 1.14 1.18 0.00 0.63 0.70 0.38 0.50 1.12 1.41 4.60 0.73 0.32 0.41 0.30 1.02 0.00 0.82 0.00 74 ER13h ExonRegion 0 6.88 16.52 9.19 4.60 7.02 12.84 5.46 0.00 2.78 2.44 3.14 4.33 9.38 10.56 5.80 5.57 3.30 2.54 3.19 10.37 0.00 6.51 0.00 75 ER13i ExonRegion 0 1.59 2.03 3.68 1.36 0.00 3.21 0.99 0.00 1.24 0.86 0.00 1.08 0.00 6.50 0.00 2.97 0.00 0.46 2.39 4.79 0.00 2.08 0.00 76 IG2 Intergenic 0 8.46 11.62 13.83 10.39 9.32 12.66 16.39 9.42 9.32 10.67 8.05 4.76 6.71 6.72 5.15 5.33 4.21 17.38 18.40 13.31 7.89 7.08 7.79 77 IG2_SR6 SilentIntergenicRegion 0 15.74 15.24 26.96 16.72 19.34 23.20 26.56 12.05 12.68 17.74 15.82 14.33 11.60 11.22 14.50 11.66 7.53 25.69 37.70 21.51 16.70 12.85 11.23 78 IG2_AR8 ActiveIntergenicRegion 0 13.39 15.97 18.38 11.10 16.38 16.70 20.49 16.82 11.56 15.49 15.60 9.87 16.35 10.17 13.23 8.50 6.85 29.07 41.03 17.91 15.89 11.34 13.96 79 IG2_SR5 SilentIntergenicRegion 0 15.17 17.96 13.68 5.00 12.93 15.89 21.18 6.91 8.65 18.16 16.75 2.16 6.25 5.41 5.80 16.35 5.50 32.34 48.84 24.82 34.16 5.21 19.58 80 IG2_AR7 ActiveIntergenicRegion 0 12.78 8.38 13.56 8.14 11.81 9.49 12.71 5.58 8.58 13.66 11.24 5.89 14.45 17.09 6.03 11.49 7.17 22.03 45.61 14.01 20.92 9.92 13.90 81 IG2_AR6 ActiveIntergenicRegion 0 5.18 21.97 20.35 16.88 13.09 16.14 26.38 13.59 17.35 17.98 18.72 7.48 10.92 16.83 6.81 10.55 12.20 37.68 33.51 25.26 18.29 11.32 14.76 82 IG2_SR4 SilentIntergenicRegion 0 9.62 18.23 21.52 16.70 14.16 24.36 29.17 15.79 16.24 21.09 16.28 11.28 17.59 15.05 8.96 11.28 8.42 30.34 30.79 18.64 14.38 14.30 15.74 83 IG2_AR5 ActiveIntergenicRegion 0 2.36 14.86 22.72 5.29 7.41 22.29 19.76 7.84 7.08 21.17 9.07 1.67 6.13 12.93 10.15 18.63 2.29 41.29 30.75 16.69 11.61 2.64 14.57 84 IG2_AR4 ActiveIntergenicRegion 0 8.87 10.26 24.52 14.96 16.17 18.25 24.68 15.29 13.50 13.45 10.06 4.25 9.03 11.16 8.37 9.89 7.26 24.76 24.83 22.64 13.52 9.60 8.80 85 IG2_AR3 ActiveIntergenicRegion 0 39.49 32.41 38.11 29.49 20.66 27.89 30.66 16.97 21.41 26.13 18.39 8.50 8.05 12.67 11.74 10.91 6.21 27.99 39.85 27.00 13.37 17.00 16.38