Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF25 Gene 0 55.39 37.68 143.40 74.34 42.65 81.57 43.81 98.06 90.81 121.46 89.29 35.89 41.36 85.51 127.21 91.61 79.94 89.36 66.02 48.25 81.56 62.39 63.96 2 295704 Transcript 0 1.96 2.31 1.59 1.65 2.06 5.17 5.53 0.90 1.64 2.45 2.62 0.00 0.00 4.05 3.47 6.09 0.24 3.03 1.87 1.25 2.32 1.03 1.50 3 463188 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 473034 Transcript 0 14.61 8.48 16.27 15.37 14.23 24.21 14.29 28.50 18.64 27.21 12.03 4.55 13.79 7.58 9.97 17.68 12.74 10.77 13.14 11.81 8.69 9.74 10.91 5 423170 Transcript 0 0.00 0.00 2.47 1.33 4.33 2.75 0.00 0.00 0.81 0.00 5.70 3.23 0.00 5.15 0.00 0.00 1.73 1.75 0.00 0.00 0.00 1.26 0.00 6 497832 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 474339 Transcript 0 1.46 2.17 15.68 6.34 6.46 11.00 4.47 10.61 6.81 9.45 6.13 3.58 3.72 8.62 18.21 9.74 5.81 8.03 5.38 6.24 6.31 7.90 6.08 8 ER1a ExonRegion 0 0.45 0.85 0.03 0.24 0.68 2.80 1.46 0.00 1.07 1.70 0.56 0.00 0.00 0.16 0.21 1.56 0.49 0.98 1.35 0.00 0.87 0.20 1.75 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ad KnownBoundary 0 56.23 44.27 22.29 12.09 22.84 48.27 50.92 22.34 12.76 36.08 18.32 0.00 0.00 7.12 55.88 47.08 37.59 9.91 42.17 6.07 22.18 46.48 33.72 12 ER1b ExonRegion 0 14.82 10.17 2.63 0.00 5.35 15.46 16.45 0.00 2.47 5.73 5.80 0.00 0.00 2.78 17.82 9.34 7.54 0.00 16.38 0.00 6.61 14.58 4.61 13 ER1c ExonRegion 1 21.80 23.39 13.72 4.22 13.38 33.74 34.95 3.11 7.66 11.81 6.96 0.00 0.00 5.52 82.69 27.64 25.09 7.76 28.35 2.77 16.09 27.09 11.16 14 ER1d ExonRegion 1 37.24 48.81 40.64 16.17 27.70 80.79 63.76 25.69 22.77 40.92 25.96 0.00 0.00 34.94 125.77 95.59 71.01 44.95 77.14 16.50 38.00 74.05 72.30 15 E1a_E2a KnownJunction 0 46.53 58.94 75.19 37.16 31.58 96.71 76.75 66.79 46.73 79.67 39.75 0.00 0.00 54.09 75.90 136.72 96.21 76.07 98.36 25.76 46.58 86.95 117.20 16 I1_SR1 SilentIntronRegion 0 11.43 7.70 12.05 15.65 11.98 16.24 17.28 12.77 12.49 16.29 4.94 7.83 8.65 8.81 7.12 6.71 7.05 4.56 8.58 9.59 5.09 10.32 10.17 17 E2_Aa NovelBoundary 0 20.45 20.13 14.84 23.81 23.09 39.30 32.90 35.20 16.03 25.76 2.58 0.00 0.00 9.77 9.64 0.00 4.77 2.28 26.92 26.27 0.00 12.06 7.94 18 ER2a ExonRegion 0 48.45 41.97 69.29 45.16 27.26 90.91 36.98 80.71 50.01 85.93 62.03 30.25 38.90 45.84 56.17 71.73 71.04 51.12 54.15 43.74 62.12 44.84 65.27 19 E2_Da KnownBoundary 0 31.26 22.04 37.23 23.97 15.28 0.00 8.44 41.48 37.04 47.06 18.69 18.91 13.15 9.36 8.90 15.21 13.28 10.20 12.61 22.56 14.58 24.92 18.61 20 E2a_E2b KnownJunction 0 15.85 25.59 61.12 32.83 4.24 34.36 21.07 66.33 35.01 64.84 63.86 29.56 62.66 27.96 41.16 28.54 24.12 25.16 16.66 10.87 58.69 22.47 18.61 21 ER2b ExonRegion 0 23.06 12.89 17.79 15.02 17.23 31.49 18.27 39.92 26.57 35.01 20.15 9.10 18.65 12.06 14.79 23.55 16.37 11.88 20.62 14.80 11.60 15.63 17.15 22 E2_Ab KnownBoundary 0 20.37 17.50 16.23 20.08 11.71 29.76 18.68 25.59 12.27 12.11 10.06 6.30 13.15 2.47 14.96 32.81 9.54 11.15 18.54 15.53 14.76 3.12 16.22 23 ER2c ExonRegion 0 22.33 32.70 135.25 93.12 43.07 43.60 32.10 128.49 80.46 150.21 152.17 40.85 31.62 76.65 96.02 100.24 135.23 80.56 66.28 67.33 127.10 66.94 47.32 24 E2_Db KnownBoundary 0 26.00 55.78 220.22 140.41 49.66 54.74 28.66 203.23 123.73 225.34 161.30 73.07 45.61 112.13 250.82 208.24 196.91 147.86 137.98 109.81 134.86 145.98 105.85 25 E2b_E2d KnownJunction 0 0.00 0.00 4.94 2.66 8.66 0.00 0.00 0.00 1.62 0.00 9.48 6.45 0.00 10.30 0.00 0.00 3.46 1.66 0.00 0.00 0.00 2.51 0.00 26 ER2d ExonRegion 0 21.59 28.01 198.97 120.34 31.31 52.31 23.80 176.86 118.63 203.98 135.74 54.23 38.22 122.91 228.84 295.43 160.42 178.86 198.69 109.79 135.20 145.90 167.76 27 E2_Dc KnownBoundary 0 3.41 2.63 5.14 5.83 16.81 31.52 11.88 10.88 8.74 19.37 2.68 0.00 6.33 2.47 0.00 0.00 8.13 8.79 15.53 8.50 5.68 0.00 0.00 28 E2c_E2d KnownJunction 1 23.12 11.51 200.50 114.47 47.45 32.65 22.17 173.78 117.33 177.10 104.24 49.37 44.96 115.49 220.78 284.97 115.29 198.31 193.42 95.68 128.31 123.75 206.58 29 ER2e ExonRegion 0 6.17 4.07 14.74 15.72 11.23 16.92 10.31 17.09 10.72 19.42 3.92 0.00 8.92 3.11 5.15 11.80 9.11 9.66 5.65 8.81 5.77 3.84 4.67 30 E2_Ac KnownBoundary 0 13.85 9.21 26.29 14.92 19.61 5.56 12.50 12.57 5.96 14.83 9.63 0.00 6.82 0.00 0.00 24.87 17.86 6.22 8.75 12.27 0.00 9.19 11.10 31 E2_Ad KnownBoundary 0 0.00 18.81 20.76 12.85 10.95 20.73 14.97 18.32 11.14 32.96 2.58 0.00 6.01 0.00 19.66 24.95 7.85 17.74 13.46 8.25 5.81 19.23 8.62 32 ER2f ExonRegion 0 7.02 16.08 39.43 27.13 12.65 16.25 14.68 28.36 17.07 40.09 10.89 1.77 7.04 8.93 21.50 44.58 18.91 26.04 22.44 15.57 9.62 23.96 18.02 33 ER2g ExonRegion 0 41.07 39.03 221.79 123.45 73.04 95.36 56.97 159.79 143.84 198.74 135.82 42.26 44.45 138.10 169.27 169.85 120.41 171.87 119.00 93.14 121.53 106.57 146.61 34 E2d_E3a KnownJunction 0 73.12 49.79 269.68 138.14 104.41 151.05 60.41 155.67 185.27 212.05 121.03 31.21 56.65 113.13 107.18 98.69 118.47 160.80 103.81 79.70 111.45 113.65 101.67 35 ER3a ExonRegion 0 47.59 52.58 255.33 139.07 80.54 180.86 104.06 150.15 166.71 216.49 164.85 65.99 55.81 121.23 178.05 142.62 162.31 153.50 75.04 72.16 126.37 80.42 63.73 36 E3a_E4a KnownJunction 0 109.57 143.20 298.90 166.75 96.18 339.92 172.37 157.68 192.74 259.38 219.79 59.57 79.86 148.57 175.78 220.37 181.39 157.61 43.86 88.84 146.54 145.86 81.61 37 E4_Aa NovelBoundary 0 25.41 8.75 31.34 12.02 3.82 21.01 17.67 17.09 17.39 20.42 7.42 0.00 0.00 3.00 9.64 11.96 0.00 17.87 4.05 6.33 3.15 5.69 0.00 38 ER4a ExonRegion 0 169.85 118.71 325.42 186.54 78.41 168.12 98.73 196.06 215.30 272.57 214.23 89.17 90.80 197.56 210.38 187.53 197.64 236.31 138.21 121.90 178.04 152.15 108.29 39 E4a_E5a KnownJunction 0 6.67 6.71 0.00 0.00 0.00 13.06 0.00 1.73 1.56 1.07 2.53 6.00 6.82 0.00 4.45 3.25 0.00 4.19 0.00 7.67 0.00 2.51 3.67 40 E4a_E5b KnownJunction 0 297.68 140.17 429.17 241.79 84.47 136.80 83.42 247.27 260.47 294.49 190.36 88.08 67.04 192.01 255.89 186.96 181.11 224.06 154.92 128.22 169.70 171.70 133.17 41 E5_Ab NovelBoundary 0 10.30 3.16 8.52 7.06 0.00 27.71 13.34 15.73 4.48 4.67 0.00 0.00 0.00 2.47 5.19 4.36 0.00 4.31 3.67 20.45 0.00 0.00 3.41 42 ER5a ExonRegion 0 14.33 7.67 19.04 11.11 3.60 20.31 9.52 16.02 13.87 13.50 9.44 4.83 4.51 7.43 13.17 11.09 6.73 15.85 6.98 14.89 6.44 6.89 7.00 43 ER5b ExonRegion 0 196.52 93.05 328.33 158.58 67.32 143.24 83.60 204.64 220.12 276.21 171.89 71.01 67.14 161.89 249.03 127.05 158.13 136.68 89.42 116.18 175.93 112.66 93.46 44 E5_Da NovelBoundary 0 156.32 72.42 231.33 97.59 46.60 120.04 103.30 143.96 147.45 139.84 69.81 37.06 25.65 109.42 126.46 81.43 95.56 108.90 59.86 67.62 95.51 117.32 56.85 45 E5b_E6a KnownJunction 0 152.03 117.81 376.89 192.85 117.49 170.30 111.69 254.25 229.54 253.15 149.41 111.34 58.92 201.66 264.05 146.12 132.49 268.78 144.66 99.39 213.01 162.70 113.19 46 ER5c ExonRegion 0 144.19 96.72 350.53 160.39 89.47 173.87 103.77 227.83 212.90 233.97 131.20 82.26 46.90 192.97 244.79 130.22 147.51 207.53 122.24 100.93 188.69 153.27 104.43 47 ER6a ExonRegion 0 116.27 102.14 360.80 189.69 95.15 195.51 95.33 266.16 226.01 279.27 185.91 112.01 150.38 194.81 329.59 235.41 148.43 265.04 153.10 113.63 195.37 155.66 157.82 48 E6a_E7b KnownJunction 0 56.31 63.48 334.70 176.13 107.56 271.15 105.81 290.02 207.52 282.21 135.61 99.63 91.55 246.04 467.64 210.63 124.08 188.61 165.18 85.84 179.15 147.63 188.74 49 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 5.50 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 50 I6 Intron 0 17.99 1.23 6.65 3.29 8.12 9.65 5.89 4.69 4.10 7.96 1.56 1.44 3.91 3.67 7.56 10.23 6.68 6.88 1.30 5.60 3.12 2.95 2.97 51 I6_SR1 SilentIntronRegion 0 18.12 1.24 6.71 3.31 8.19 9.72 5.94 4.73 4.13 8.02 1.58 1.45 3.94 3.70 7.62 10.31 6.73 6.93 1.31 5.63 3.15 2.98 3.00 52 E7_Aa NovelBoundary 0 18.15 5.53 5.56 5.43 21.56 12.61 4.15 4.85 2.84 17.25 2.53 0.00 6.49 2.30 14.96 7.78 0.00 4.73 4.42 0.00 0.00 5.02 12.55 53 ER7a ExonRegion 0 1.46 2.17 15.68 6.34 6.46 11.00 4.47 10.61 6.81 9.45 6.13 3.58 3.72 8.62 18.21 9.74 5.81 8.03 5.38 6.24 6.31 7.90 6.08 54 ER7b ExonRegion 0 36.07 43.99 329.28 150.21 86.09 227.83 89.91 256.41 197.40 284.31 185.10 91.48 119.60 234.79 376.78 172.12 193.39 173.05 167.85 103.56 192.11 135.66 168.54 55 E7_Da KnownBoundary 0 45.49 42.43 374.79 182.76 77.50 223.73 111.47 266.08 215.74 310.63 203.37 107.89 111.68 171.46 331.91 187.73 272.28 175.51 137.79 108.47 199.54 120.63 145.89 56 ER7c ExonRegion 0 58.71 67.82 328.64 168.35 85.53 177.44 91.29 219.77 201.53 260.26 193.27 102.09 96.89 193.68 305.39 228.48 203.72 207.85 129.88 98.55 183.63 137.63 165.62 57 E7_Db NovelBoundary 1 0.00 3.35 11.03 3.50 4.24 0.00 1.81 2.14 7.29 7.39 2.68 31.51 6.33 2.47 4.94 0.00 0.00 3.61 0.00 3.26 0.00 3.06 8.45 58 E7b_E8a KnownJunction 1 65.34 101.43 406.37 242.13 134.13 159.45 98.88 323.29 255.00 327.93 167.31 100.23 84.09 180.94 413.01 351.02 141.84 347.21 141.56 95.62 160.74 171.15 167.82 59 ER8a ExonRegion 0 122.22 67.10 294.40 137.46 87.09 156.99 79.01 170.51 159.41 213.44 171.80 62.18 80.89 169.69 255.01 169.88 140.43 171.30 133.41 73.09 148.88 106.51 123.44 60 E8_Da KnownBoundary 1 26.52 11.71 68.89 63.76 47.45 65.93 44.87 58.78 78.33 110.56 81.28 26.26 0.00 84.94 138.45 47.77 49.09 64.17 43.01 37.01 67.83 34.17 36.45 61 ER8b ExonRegion 0 19.60 14.18 45.59 27.25 25.41 29.01 19.61 32.02 45.34 58.17 50.88 10.77 11.51 56.85 77.23 37.34 29.64 37.02 27.50 24.30 44.04 37.78 24.12 62 ER8c ExonRegion 0 3.48 3.78 3.15 3.07 3.44 7.53 9.60 1.79 2.21 3.19 4.69 0.00 0.00 7.95 6.74 10.61 0.00 5.08 2.39 2.51 3.78 1.86 1.26 63 IG37 Intergenic 0 4.63 6.42 11.09 5.92 12.67 20.49 16.40 18.45 11.62 15.98 3.99 1.73 3.85 5.02 4.27 2.89 3.61 11.38 9.28 11.37 2.68 1.01 2.85 64 IG37_SR1 SilentIntergenicRegion 0 4.65 6.45 11.14 5.95 12.73 20.58 16.48 18.54 11.68 16.05 4.01 1.74 3.87 5.05 4.29 2.90 3.62 11.44 9.33 11.42 2.69 1.02 2.87