Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SERPINE2 Gene 0 41.56 85.46 95.70 48.09 98.56 112.26 147.60 170.85 115.80 86.98 2.61 3.34 4.20 1.91 2.97 2.94 2.70 57.42 59.23 31.69 455.88 4143.87 1363.16 2 258405 Transcript 0 13.48 15.29 31.21 11.95 49.83 34.67 72.74 64.05 36.20 27.25 0.97 0.00 0.00 0.00 0.00 0.00 0.00 7.86 23.20 2.65 195.06 1216.99 425.19 3 454956 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.93 11.14 3.50 4 489065 Transcript 0 0.00 1.23 6.97 1.33 6.25 2.55 1.29 1.48 0.97 1.12 0.00 0.00 0.00 0.00 1.17 0.00 0.00 4.34 0.00 0.55 5.89 84.00 60.38 5 409304 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 417966 Transcript 0 0.00 0.63 0.56 0.00 0.00 0.00 1.64 2.21 1.03 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.25 7.33 6.79 44.30 7 447280 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 409840 Transcript 0 0.05 0.68 1.22 0.19 0.52 3.39 1.75 1.09 1.58 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.48 1.78 2.74 4.67 73.41 9 423446 Transcript 0 0.50 0.36 0.65 0.24 0.47 0.11 3.67 1.82 0.44 0.30 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.49 0.38 0.50 2.22 4.38 58.95 10 432738 Transcript 0 0.57 0.00 0.49 0.00 0.00 1.48 1.77 1.38 1.48 0.92 0.00 0.00 0.00 0.00 0.05 0.00 0.00 1.28 1.71 1.14 3.55 15.56 58.30 11 457690 Transcript 0 0.00 0.00 0.56 0.00 0.00 0.00 0.12 0.63 0.11 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.39 0.00 11.93 0.80 12 478966 Transcript 0 1.28 6.89 16.79 3.25 13.74 22.04 30.65 22.75 15.99 16.40 0.02 0.04 0.08 0.04 0.02 0.00 0.00 18.35 14.86 5.10 81.19 762.29 322.76 13 473202 Transcript 0 8.19 17.98 16.17 12.72 22.04 23.20 46.18 40.04 34.06 19.98 1.75 2.62 3.24 2.04 3.38 4.23 4.13 17.31 12.80 11.97 42.65 818.46 225.27 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.87 0.00 0.00 0.86 7.92 2.79 0.00 2.16 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 7.85 3.65 5.75 9.00 9.44 16 ER1c ExonRegion 0 0.00 2.03 0.00 0.00 2.68 18.34 5.30 0.00 7.41 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.09 15.93 6.38 15.43 25.00 24.96 17 ER1d ExonRegion 0 18.11 27.85 23.59 7.46 23.76 76.04 59.38 57.56 44.73 56.03 0.00 0.96 0.00 1.08 0.00 0.00 0.00 32.49 110.71 23.90 637.32 4681.47 2525.70 18 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.93 11.14 3.50 19 E1a_E9a KnownJunction 0 6.89 13.94 67.62 19.34 3.23 31.46 18.33 122.32 110.10 102.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.47 242.83 45.38 1270.51 8180.00 4774.53 20 ER2a ExonRegion 0 0.00 0.63 0.56 0.00 0.00 0.00 1.64 2.21 1.03 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.25 7.33 6.79 44.30 21 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.63 1.36 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 5.56 24.37 132.48 22 ER2b ExonRegion 0 0.00 0.00 3.68 0.69 0.91 1.25 5.84 7.96 3.68 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.02 0.79 5.64 25.95 104.21 23 E2a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.19 3.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 10.59 0.00 24 ER3a ExonRegion 0 0.21 0.41 2.04 0.00 1.09 1.12 4.03 3.40 2.80 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.35 1.94 2.59 6.95 8.46 170.87 25 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 0 1.00 0.72 1.29 0.48 0.95 0.22 7.35 3.65 0.87 0.61 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.98 0.75 1.00 4.43 8.76 117.89 27 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 0 0.00 2.30 1.03 0.76 1.00 4.45 2.98 0.97 1.72 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 1.25 4.02 7.58 122.76 29 E5a_E9a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 8.01 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 3.26 0.00 2.63 0.00 30 ER6a ExonRegion 0 1.14 0.00 0.98 0.00 0.00 2.95 3.54 2.77 2.96 1.84 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.41 3.42 2.28 7.10 31.12 116.60 31 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 32 ER7a ExonRegion 0 0.00 0.14 0.00 0.00 0.00 0.00 1.44 0.16 1.77 0.03 0.00 0.00 4.48 0.00 2.18 0.00 0.00 2.39 0.07 0.00 7.36 33.43 25.23 33 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 2.84 43.90 58.30 34 ER8a ExonRegion 0 0.00 0.00 0.56 0.00 0.00 0.00 0.12 0.63 0.11 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.39 0.00 11.93 0.80 35 ER9a ExonRegion 0 12.98 80.22 114.98 58.29 80.60 150.37 110.53 239.49 178.60 142.45 2.74 2.41 5.45 1.37 1.69 0.92 1.15 245.50 212.65 75.18 1546.52 9651.90 5221.76 36 E9_Da KnownBoundary 0 39.41 136.95 169.21 76.61 271.82 303.75 329.32 396.20 261.51 208.05 7.16 0.00 6.66 0.00 8.90 0.00 9.44 202.17 166.03 67.62 2637.65 9293.47 3482.13 37 ER9b ExonRegion 0 32.98 173.35 207.38 114.01 116.80 262.66 262.42 400.07 321.07 249.44 4.00 3.05 13.57 0.85 6.18 0.11 2.83 175.28 146.00 110.59 2479.01 10728.51 3715.97 38 E9_Db KnownBoundary 0 0.00 2.63 5.85 1.70 0.00 0.00 0.00 0.00 1.16 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 2.66 19.72 11.10 39 E9b_E10a KnownJunction 0 98.68 228.64 307.14 179.03 135.91 256.16 263.56 600.67 391.55 330.54 5.16 6.15 20.45 2.47 6.30 0.00 13.28 253.61 286.97 170.28 2539.36 17128.66 5969.36 40 E9_Dc KnownBoundary 0 0.00 0.00 1.15 1.40 0.00 0.00 2.03 0.00 1.30 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 29.58 25.18 41 ER9c ExonRegion 0 0.00 4.07 12.25 2.73 2.68 1.83 1.32 0.00 3.71 6.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 0.00 2.13 17.63 156.26 79.29 42 ER9d ExonRegion 0 0.00 1.23 6.97 1.33 6.25 2.55 1.29 1.48 0.97 1.12 0.00 0.00 0.00 0.00 1.17 0.00 0.00 4.34 0.00 0.55 5.89 84.00 60.38 43 ER10a ExonRegion 0 92.26 251.00 405.01 217.89 295.14 450.21 435.23 688.47 530.70 419.19 11.89 8.62 10.80 3.45 6.54 0.66 2.04 318.91 300.42 172.58 3202.00 21675.25 7224.70 44 E10a_E11a KnownJunction 0 87.94 252.26 425.44 249.35 441.00 680.80 652.59 714.07 570.31 411.95 13.21 6.30 6.82 11.65 10.63 0.00 0.00 398.12 499.68 163.37 3183.76 32727.16 10352.84 45 ER11a ExonRegion 0 103.06 242.11 438.31 222.68 321.95 541.88 504.62 723.39 599.01 452.05 7.44 11.87 15.94 6.50 6.70 0.77 0.00 537.62 389.02 167.33 3734.60 23270.03 9789.95 46 E11a_E12b KnownJunction 0 171.44 360.26 483.31 213.69 366.72 465.64 528.01 671.48 535.90 404.25 0.00 0.00 6.82 2.47 0.00 0.00 0.00 382.95 264.48 163.50 3515.87 20107.86 8069.29 47 ER12a ExonRegion 0 1.28 6.89 16.79 3.25 13.74 22.04 30.65 22.75 15.99 16.40 0.02 0.04 0.08 0.04 0.02 0.00 0.00 18.35 14.86 5.10 81.19 762.29 322.76 48 E12_Ab KnownBoundary 0 0.00 3.09 1.83 0.00 0.00 27.54 26.72 35.61 11.78 14.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.08 14.02 14.51 77.96 506.89 270.00 49 ER12b ExonRegion 0 168.99 384.13 455.72 209.84 427.83 671.42 637.40 711.67 550.88 420.92 6.43 4.91 22.05 5.09 5.51 2.15 0.05 455.87 346.66 166.12 3582.34 18152.33 8806.43 50 E12_Da KnownBoundary 0 125.13 240.88 358.24 143.74 537.44 742.02 706.21 509.89 359.83 292.77 4.79 18.31 6.82 0.00 0.00 0.00 0.00 270.94 171.68 116.97 2284.03 8222.19 4887.21 51 ER12c ExonRegion 0 145.00 269.57 365.12 168.09 431.22 606.44 582.40 538.52 399.94 292.32 4.88 7.98 2.22 3.05 7.07 0.00 5.56 305.14 170.56 113.36 2302.03 9944.38 5962.98 52 E12b_E13a KnownJunction 0 146.25 354.34 392.86 229.41 378.69 632.02 572.13 631.76 477.40 320.70 2.05 0.00 0.00 4.94 13.35 0.00 4.11 283.25 194.26 118.25 2503.22 11500.26 7325.61 53 ER13a ExonRegion 0 129.11 313.17 388.44 209.20 353.20 555.64 515.02 603.23 424.26 323.43 7.73 10.82 0.00 4.87 10.15 0.00 3.30 300.26 234.12 119.15 2507.82 12299.01 7323.99 54 ER13b ExonRegion 0 152.22 265.56 434.08 230.77 444.23 531.75 668.21 798.62 499.69 398.76 11.58 10.63 14.97 2.38 7.47 1.20 2.70 252.36 320.89 122.72 2728.39 17204.29 7521.99 55 E13_Da KnownBoundary 0 0.00 27.56 15.11 1.43 23.17 26.97 66.55 29.12 38.40 14.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.30 4.80 11.76 47.32 1222.96 120.87 56 E13a_E13c KnownJunction 0 26.97 30.59 62.42 23.91 99.66 69.34 145.47 128.11 72.40 54.50 1.95 0.00 0.00 0.00 0.00 0.00 0.00 15.71 46.40 5.31 390.12 2433.97 850.39 57 E13a_E13d KnownJunction 0 226.48 198.52 448.62 206.30 547.54 505.56 723.56 780.98 431.65 367.04 9.27 18.01 8.28 0.00 5.19 3.59 7.95 147.91 215.82 124.64 2157.64 11804.23 4999.12 58 ER13c ExonRegion 0 3.74 15.19 10.81 8.26 15.71 18.45 43.62 37.23 34.41 17.15 0.61 1.20 1.82 0.83 0.24 0.20 0.29 15.30 9.14 8.36 42.11 854.03 231.14 59 E13_Ac KnownBoundary 0 3.04 6.18 1.57 3.26 18.68 34.13 34.05 19.72 19.13 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.29 28.89 6.20 26.07 411.12 93.05 60 E13_Ad KnownBoundary 0 0.00 3.35 4.29 0.00 7.56 16.30 28.00 10.88 15.54 4.84 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.40 0.00 12.02 23.60 199.74 67.61 61 ER13d ExonRegion 0 78.31 90.83 197.69 88.59 272.93 250.01 387.48 413.10 252.79 190.39 4.51 5.77 4.69 0.54 3.87 0.99 2.20 91.16 148.65 59.57 1217.92 6882.56 2676.26 62 ER13e ExonRegion 0 281.89 273.40 487.60 250.11 621.36 651.94 784.59 878.34 549.48 425.17 6.97 14.45 14.45 2.98 4.42 0.35 2.76 198.61 251.94 125.41 2215.75 15678.51 6503.30 63 E13_Db KnownBoundary 0 3.70 0.00 11.03 4.86 10.27 12.15 43.06 26.49 28.21 19.47 2.37 0.00 0.00 0.00 0.00 0.00 0.00 14.63 9.60 8.95 65.73 580.37 339.32 64 E13b_E13e KnownJunction 0 457.49 476.76 581.53 268.63 708.83 929.01 962.61 999.09 635.64 454.88 10.48 6.30 6.66 0.00 16.19 0.00 0.00 168.67 356.53 128.41 2234.86 23094.70 8534.95 65 ER13f ExonRegion 0 12.64 20.76 21.52 17.18 28.36 27.94 48.74 42.85 33.71 22.81 2.90 4.04 4.66 3.25 6.52 8.26 7.96 19.32 16.45 15.58 43.19 782.90 219.41 66 E13_Ae KnownBoundary 0 21.26 35.98 30.90 31.26 45.16 30.78 83.11 52.86 38.37 29.68 2.63 0.00 6.82 0.00 0.00 3.50 0.00 11.32 18.54 17.32 48.06 1076.12 268.04 67 ER13g ExonRegion 0 344.79 407.21 521.45 237.86 576.83 702.63 846.73 986.61 589.34 475.68 12.13 3.49 14.41 2.66 9.82 4.48 0.00 137.33 317.19 113.84 1903.55 19589.20 6840.47 68 E13c_E14a KnownJunction 0 494.09 492.74 465.71 193.25 660.27 664.62 972.20 826.25 531.07 441.88 11.74 12.60 21.43 2.47 5.07 6.75 0.00 127.14 331.49 121.70 1583.48 16911.04 5271.26 69 ER14a ExonRegion 0 375.11 479.59 506.75 221.61 704.46 600.74 903.95 866.20 558.88 386.54 11.32 17.94 15.56 2.71 4.14 3.89 0.00 122.97 262.92 105.24 1282.24 16068.49 5065.16 70 E14_Da KnownBoundary 0 514.68 561.15 537.27 267.80 970.29 811.86 1413.82 986.64 611.37 413.46 8.58 0.00 27.60 0.00 10.63 0.00 0.00 129.67 326.50 113.13 1146.77 22276.07 5499.52 71 ER14b ExonRegion 0 216.92 499.87 426.03 184.94 467.76 378.80 618.38 718.04 375.28 298.34 6.18 8.08 6.09 3.15 1.54 2.98 0.51 45.37 123.18 67.79 495.90 15700.73 2423.89 72 E14_Db KnownBoundary 0 6.30 43.61 4.46 4.76 17.57 4.88 28.57 39.23 17.07 13.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.61 2.68 24.71 480.74 52.16 73 ER14c ExonRegion 0 1.19 14.38 1.73 1.53 3.65 1.07 10.82 17.41 8.68 6.91 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 6.68 2.70 5.70 167.95 30.37 74 E14_Dc KnownBoundary 0 0.00 0.00 2.75 0.00 0.00 0.00 0.00 4.72 3.10 1.26 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 13.37 0.00 0.00 77.46 20.40 75 ER14d ExonRegion 0 1.69 0.03 0.00 0.00 2.13 0.00 0.00 1.76 0.75 1.25 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.69 0.13 0.00 37.73 18.54