Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TUBA1 Gene 0 102.17 1.50 12.90 12.01 31.18 14.06 5.03 36.52 57.95 2.37 103.83 65.63 93.29 458.35 310.70 168.49 374.50 0.49 2.11 4.39 35.93 40.56 40.06 2 427737 Transcript 0 0.39 0.00 0.00 0.00 0.19 0.48 0.23 0.00 0.27 0.00 0.50 1.23 4.15 4.48 6.02 0.26 12.32 0.48 0.28 0.00 0.19 0.18 0.25 3 398989 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 392088 Transcript 0 0.21 0.00 0.09 1.03 0.00 0.00 0.00 1.27 1.32 0.00 1.57 0.72 3.37 0.59 1.05 0.45 0.66 0.00 0.00 0.00 0.22 0.32 0.29 5 248437 Transcript 0 0.27 0.00 0.54 0.00 0.91 0.06 0.00 0.00 0.26 0.00 0.10 0.00 0.00 1.03 1.09 0.36 1.75 0.00 0.00 0.00 0.26 0.75 0.30 6 475683 Transcript 0 64.45 0.32 4.58 3.75 12.32 1.77 0.79 8.46 19.90 0.01 4.13 6.47 3.78 40.01 22.77 15.56 35.49 0.01 0.01 0.07 9.26 4.29 3.40 7 462806 Transcript 0 181.29 0.76 7.18 4.57 34.21 5.21 4.67 17.84 33.58 0.45 22.22 22.13 29.75 92.24 60.09 42.23 78.92 0.25 0.75 0.07 18.53 30.59 18.53 8 332858 Transcript 0 0.00 0.00 10.08 32.63 0.00 0.00 0.00 28.46 93.63 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 498660 Transcript 0 33.64 0.00 0.00 0.00 3.57 0.00 2.25 4.76 8.88 0.00 0.00 0.00 0.00 2.18 9.02 17.35 7.67 0.00 0.00 0.00 4.70 2.82 3.41 10 447205 Transcript 0 0.75 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.63 2.56 3.41 0.02 1.11 0.00 0.00 0.00 2.67 1.82 13.46 11 456818 Transcript 0 1.08 0.00 0.00 0.00 0.00 0.00 0.45 0.00 1.88 0.00 0.66 0.00 0.66 2.90 3.08 3.54 4.49 0.00 0.00 0.00 1.88 1.06 1.00 12 425551 Transcript 0 4.05 0.00 0.00 0.00 0.63 0.22 0.63 0.92 2.12 0.00 2.50 0.42 0.92 5.73 4.10 2.82 9.40 0.00 0.00 0.00 1.55 0.74 0.70 13 472881 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1a ExonRegion 0 0.77 0.00 0.00 0.00 0.37 0.95 0.46 0.00 0.55 0.00 1.00 2.47 1.48 6.49 3.14 0.51 12.58 0.95 0.55 0.00 0.38 0.36 0.51 15 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 16.19 0.00 17.20 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1b ExonRegion 0 4.30 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.42 0.00 0.09 0.07 3.93 5.53 6.74 0.00 16.08 0.00 0.00 0.00 0.28 0.10 0.00 17 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 2.47 8.90 0.00 12.06 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E7d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.43 0.00 0.18 0.26 0.01 0.00 0.00 0.58 0.84 0.00 0.46 1.43 0.09 1.18 2.11 0.89 1.31 0.00 0.00 0.00 0.44 0.63 0.58 20 E2a_E7a KnownJunction 0 0.00 0.00 0.00 1.80 0.00 0.00 0.00 1.97 1.79 0.00 2.68 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 0.27 0.00 0.54 0.00 0.91 0.06 0.00 0.00 0.26 0.00 0.10 0.00 0.00 1.03 1.09 0.36 1.75 0.00 0.00 0.00 0.26 0.75 0.30 22 E3_Ab KnownBoundary 0 0.00 0.00 3.31 0.00 8.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.42 4.45 0.00 9.35 0.00 0.00 0.00 0.00 3.06 0.00 23 E3_Ac KnownBoundary 0 187.29 0.00 1.60 1.30 69.95 22.43 10.20 9.78 4.54 0.00 25.06 0.00 0.00 452.00 269.24 55.20 183.54 0.00 0.00 2.43 10.32 7.90 17.50 24 ER3b ExonRegion 1 102.72 0.00 1.23 1.09 60.12 14.55 4.59 7.03 3.13 0.00 25.51 0.00 0.00 263.87 142.94 41.41 151.18 0.00 0.00 1.13 7.93 14.45 14.29 25 ER3c ExonRegion 1 866.41 5.24 6.02 18.66 287.61 119.73 37.66 54.39 78.20 1.12 392.29 9.24 8.23 2028.13 1150.96 732.40 1422.25 3.45 2.97 13.29 114.20 102.69 166.87 26 E3a_E7a KnownJunction 1 819.63 8.29 13.84 30.17 207.64 120.95 44.43 94.80 123.06 1.67 389.99 17.41 27.92 591.03 458.25 764.84 1231.70 5.14 3.76 20.39 106.87 100.79 176.96 27 E3a_E7b KnownJunction 0 33.64 0.00 0.00 0.00 3.57 0.00 2.25 4.76 8.88 0.00 0.00 0.00 0.00 2.18 9.02 17.35 7.67 0.00 0.00 0.00 4.70 2.82 3.41 28 ER4a ExonRegion 0 1.49 0.00 0.00 0.00 0.95 0.00 0.00 0.00 1.26 0.00 0.00 0.00 1.25 5.13 2.36 0.04 2.22 0.00 0.00 0.00 5.34 3.64 8.99 29 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.93 30 ER5a ExonRegion 0 2.16 0.00 0.00 0.00 0.00 0.00 0.90 0.00 3.75 0.00 1.33 0.00 1.31 5.79 6.15 7.07 8.98 0.00 0.00 0.00 3.76 2.13 2.00 31 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER6a ExonRegion 0 5.13 0.00 0.00 0.00 1.27 0.43 1.26 1.83 2.99 0.00 2.63 0.85 1.83 9.22 8.19 5.64 18.81 0.00 0.00 0.00 3.10 1.48 1.39 33 E6a_E7a KnownJunction 0 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 2.37 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E7_Aa NovelBoundary 0 68.60 0.00 1.39 1.93 23.85 0.00 2.16 4.52 10.68 0.00 5.37 5.40 0.00 9.83 20.03 0.00 17.11 0.00 0.00 0.00 5.13 2.94 4.35 35 ER7a ExonRegion 0 166.44 1.59 22.85 32.83 63.31 13.12 6.28 80.57 124.00 3.63 259.38 92.34 92.79 979.26 590.98 409.66 963.79 1.86 3.29 11.89 80.70 92.60 104.98 36 E7_Da KnownBoundary 0 37.27 0.00 5.80 2.83 27.76 2.78 0.00 3.82 14.70 0.00 2.58 12.60 13.15 12.30 0.00 11.96 27.96 0.00 0.00 0.00 3.09 0.00 0.00 37 E7a_E7b KnownJunction 0 221.67 5.92 39.77 63.30 459.17 57.92 12.67 135.63 200.75 4.54 306.87 185.76 255.18 1051.80 805.24 662.48 1324.82 4.27 4.52 23.78 104.40 123.02 199.75 38 ER7b ExonRegion 0 64.45 0.32 4.58 3.75 12.32 1.77 0.79 8.46 19.90 0.01 4.13 6.47 3.78 40.01 22.77 15.56 35.49 0.01 0.01 0.07 9.26 4.29 3.40 39 E7_Ab KnownBoundary 0 190.63 2.50 5.62 1.63 16.64 0.00 1.77 11.62 15.91 0.00 2.11 6.30 7.14 43.26 40.67 16.15 39.46 0.00 0.00 0.00 20.70 2.94 7.26 40 ER7c ExonRegion 0 243.04 4.61 36.04 48.03 212.82 78.18 29.55 132.08 197.47 2.35 278.05 216.58 289.52 1185.01 734.02 439.44 1134.30 2.61 6.22 13.60 107.55 124.71 127.35 41 E7_Ac KnownBoundary 0 242.78 3.35 32.76 47.08 201.19 113.51 48.67 131.31 201.85 0.00 313.71 221.62 410.20 1301.79 775.08 422.37 1106.87 1.78 9.60 11.63 102.24 127.37 124.20 42 ER7d ExonRegion 0 223.48 6.10 46.09 44.08 101.08 86.23 27.40 132.97 222.07 8.42 452.64 306.98 428.50 1535.61 911.13 704.57 1485.36 1.26 9.07 13.32 160.84 167.07 150.81 43 E7_Db KnownBoundary 0 514.98 5.92 48.67 35.89 118.59 37.65 17.75 112.63 194.07 13.67 309.55 165.20 290.08 1355.30 702.39 524.05 1400.28 2.20 4.52 9.27 101.99 99.14 124.20 44 E7_Dc KnownBoundary 0 123.80 0.00 0.00 2.06 0.00 0.00 1.99 5.09 12.21 0.00 5.26 0.00 6.82 48.09 22.25 27.86 48.71 0.00 0.00 0.00 6.30 14.76 3.84 45 E7c_E7d KnownJunction 0 342.06 0.00 45.74 41.02 111.80 36.40 14.66 138.01 229.42 9.11 408.26 213.82 353.39 1866.45 1016.13 567.63 1587.94 4.02 0.00 20.65 135.91 171.70 111.06 46 E7c_E7e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER7e ExonRegion 0 450.43 2.68 50.85 43.05 109.58 37.84 15.05 138.28 241.07 12.30 415.13 232.22 354.95 1862.72 899.92 593.21 1661.55 3.70 2.46 15.09 148.85 160.05 132.68 48 E7_Dd KnownBoundary 0 196.78 3.35 3.52 1.96 27.42 5.68 3.93 18.36 23.00 0.00 22.74 31.21 20.45 65.04 99.88 29.74 64.70 0.00 0.00 0.00 17.79 31.72 11.95 49 ER7f ExonRegion 0 200.09 1.64 3.16 3.09 9.98 3.67 2.14 19.15 26.70 0.84 13.75 15.82 17.50 69.21 68.29 26.86 60.43 0.00 0.00 0.00 16.27 28.37 9.71 50 ER7g ExonRegion 0 181.29 0.76 7.18 4.57 34.21 5.21 4.67 17.84 33.58 0.45 22.22 22.13 29.75 92.24 60.09 42.23 78.92 0.25 0.75 0.07 18.53 30.59 18.53 51 E7_Ad KnownBoundary 0 139.43 0.00 6.86 1.60 38.03 37.54 8.39 15.77 31.42 0.00 16.90 12.00 34.58 126.02 47.59 33.67 44.41 2.11 0.00 0.00 16.43 29.27 18.35 52 ER7h ExonRegion 0 292.11 4.59 60.79 42.46 71.71 43.56 12.66 174.52 246.04 11.43 483.09 368.84 616.47 2056.45 1197.97 872.31 1757.89 1.66 12.64 15.98 168.64 184.95 181.16 53 E7_De KnownBoundary 0 677.68 15.19 63.78 39.49 83.45 47.25 13.16 156.99 241.98 28.66 783.04 337.31 574.80 2162.59 1375.24 1209.26 2611.31 27.94 37.84 15.66 230.99 232.56 260.70 54 E7_Df KnownBoundary 0 427.85 5.92 34.59 28.17 82.77 59.11 9.58 159.61 242.10 9.72 377.36 272.94 257.13 1309.80 685.33 428.61 1502.76 5.14 4.24 27.36 130.97 159.21 112.51 55 ER7i ExonRegion 0 492.85 10.26 65.82 45.88 74.92 53.44 8.95 205.77 322.42 19.01 690.69 355.02 459.18 1980.03 1124.72 951.50 2423.64 1.85 7.28 21.48 238.32 213.61 223.05 56 ER7j ExonRegion 0 325.41 10.98 50.32 36.14 67.65 49.54 12.56 152.88 228.78 11.79 357.88 303.93 460.64 1641.34 870.91 546.03 1340.55 1.82 5.57 14.68 124.11 148.66 158.97 57 E7_Dg KnownBoundary 0 406.22 540.63 1129.44 681.57 174.79 761.10 521.65 1962.97 1671.83 1654.29 311.55 200.47 324.17 1188.78 881.02 706.91 823.47 3328.33 100.24 344.64 146.04 153.63 219.38 58 ER7k ExonRegion 1 338.32 5.50 54.12 30.10 80.29 61.48 21.78 131.88 201.74 13.50 313.57 304.63 507.65 1601.91 1028.59 587.34 1336.29 0.92 10.25 14.17 111.63 134.60 112.76 59 E7_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER7l ExonRegion 0 303.83 3.28 56.84 42.94 61.86 44.09 19.25 108.89 191.77 7.81 315.12 195.54 291.41 1243.28 871.85 583.91 993.87 1.38 10.22 3.91 95.61 104.05 153.89 61 E7_Dh KnownBoundary 1 421.56 3.35 49.08 35.99 110.44 67.92 14.88 69.58 134.34 8.65 231.37 45.61 103.56 382.37 401.76 512.34 843.66 15.09 13.37 12.08 68.76 102.20 158.52 62 E7h_E7f KnownJunction 0 0.00 0.00 10.08 32.63 0.00 0.00 0.00 28.46 93.63 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E7_Af KnownBoundary 0 130.76 8.29 21.67 30.63 22.75 5.05 8.30 51.22 54.72 16.28 121.40 48.92 86.52 398.73 338.46 161.15 341.09 2.32 4.80 5.75 27.24 61.11 31.50 64 ER7m ExonRegion 0 397.91 4.88 51.22 53.43 100.61 49.88 15.89 120.30 189.71 8.72 357.59 219.07 378.95 1618.92 1386.22 693.10 1128.91 0.00 12.74 7.23 100.93 147.51 186.77 65 ER7n ExonRegion 0 250.55 6.37 30.75 39.48 77.82 51.24 11.21 100.00 144.28 5.93 288.51 213.56 298.51 1379.68 999.27 417.55 945.05 1.18 8.00 12.07 85.76 107.26 103.60 66 E7_Di KnownBoundary 0 237.00 5.39 28.00 34.39 74.53 26.41 5.65 77.55 94.39 2.79 237.01 172.56 125.32 963.33 830.83 370.07 721.93 0.00 7.91 8.56 68.20 73.11 78.28 67 E7_Dj KnownBoundary 0 204.93 5.92 20.52 14.48 72.84 33.62 6.14 34.30 74.68 2.74 152.93 135.79 122.23 934.90 646.40 229.94 470.22 0.00 0.00 9.40 48.50 54.07 111.23 68 ER7o ExonRegion 0 230.58 5.74 33.23 39.92 88.30 34.19 6.62 86.73 139.50 4.18 264.47 209.34 189.81 1300.16 999.74 404.38 773.38 0.43 7.31 14.89 77.26 81.13 121.09 69 ER7p ExonRegion 0 217.61 3.55 38.39 40.95 87.68 29.08 8.10 70.83 138.76 4.48 254.87 177.71 199.82 1269.00 1074.81 434.83 713.30 1.85 6.07 16.82 72.16 87.27 100.26 70 E7_Dk KnownBoundary 0 308.05 2.96 40.12 40.55 105.52 37.65 15.63 75.17 130.55 3.12 302.55 181.86 228.39 1360.24 1358.55 585.23 906.03 2.36 17.60 12.08 95.51 125.77 126.17 71 ER7q ExonRegion 0 184.31 4.69 28.86 28.68 105.99 23.88 13.51 69.74 113.15 2.90 287.80 149.06 192.10 1119.22 1094.19 381.28 889.02 0.15 9.04 13.24 83.07 88.66 80.79 72 E7_Dl KnownBoundary 1 233.82 5.79 23.45 25.30 120.03 31.74 13.43 113.61 107.29 5.26 298.18 189.81 85.55 1213.73 1021.70 319.23 893.59 15.05 0.00 27.93 94.21 78.38 70.60 73 ER7r ExonRegion 0 48.98 0.80 7.00 7.79 18.17 5.28 2.43 20.50 34.16 1.61 55.88 26.81 32.38 299.61 267.23 76.47 194.85 0.00 0.34 4.07 18.29 22.40 17.72