Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACCN4 Gene 0 2.47 26.83 65.54 177.72 31.92 70.10 3.88 52.44 71.75 95.68 0.11 0.55 0.30 0.28 0.58 0.20 0.22 19.58 28.90 64.57 0.75 0.20 0.29 2 461395 Transcript 0 0.97 5.77 14.77 58.03 9.68 19.31 2.49 15.88 18.55 25.77 0.10 0.66 0.38 0.32 0.57 0.22 0.16 5.81 7.36 19.82 0.56 0.10 0.18 3 358078 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 347842 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 5 474489 Transcript 0 0.55 3.21 14.71 53.69 4.98 15.82 0.65 9.05 15.89 16.12 0.00 0.00 0.00 0.12 0.00 0.00 0.00 3.74 5.96 8.11 0.41 0.00 0.00 6 473709 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.00 1.44 7.20 19.22 3.11 12.79 2.49 6.87 12.41 13.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 9.77 13.74 0.70 0.00 0.00 8 E1_Ab KnownBoundary 0 0.00 2.76 14.04 15.85 4.16 20.27 10.47 4.15 19.97 29.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.40 4.24 8.95 0.00 0.00 0.00 9 ER1b ExonRegion 0 2.57 25.46 72.87 123.84 18.47 71.31 3.42 47.20 78.72 124.38 0.00 0.00 0.00 0.00 0.00 0.00 0.17 27.83 42.12 83.87 0.35 0.11 0.12 10 E1a_E3a KnownJunction 0 14.08 88.34 183.17 407.04 20.03 108.40 6.27 162.20 184.20 241.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.08 96.47 163.24 0.00 0.00 3.67 11 Ix Intron 0 0.40 0.77 13.57 20.79 5.48 15.78 1.96 8.59 8.44 13.03 0.22 0.27 0.15 0.00 0.00 0.00 0.00 4.63 7.01 16.46 0.75 0.00 0.22 12 Ix_AR1 ActiveIntronRegion 0 0.45 0.83 16.60 21.20 8.47 23.44 2.42 10.89 8.13 14.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 9.47 18.13 0.94 0.00 0.00 13 Ix_SR2 SilentIntronRegion 0 0.47 1.06 13.58 24.10 4.41 13.44 2.11 8.09 9.51 12.51 0.43 0.53 0.29 0.00 0.00 0.00 0.00 5.35 5.70 17.83 0.96 0.00 0.44 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.98 0.00 4.41 0.00 0.75 2.66 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 4.38 0.94 0.00 0.00 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2b ExonRegion 0 0.00 0.00 0.00 0.30 0.00 0.34 0.00 1.73 0.18 3.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.12 3.31 0.49 0.00 0.00 17 ER3a ExonRegion 0 5.01 65.55 150.31 303.95 52.33 135.60 3.88 113.52 161.60 221.45 0.44 0.00 0.00 0.00 0.00 0.00 0.00 47.24 57.45 128.10 0.00 0.00 0.24 18 E3a_E4a KnownJunction 0 0.00 76.50 178.08 393.72 87.78 234.52 10.51 164.75 191.29 298.62 2.58 0.00 0.00 0.00 0.00 0.00 0.00 77.89 71.15 166.06 0.00 0.00 0.00 19 ER4a ExonRegion 0 1.47 67.44 174.37 362.34 51.38 129.97 7.89 135.83 182.30 252.09 0.66 0.00 0.00 0.00 0.00 0.00 0.00 57.80 68.14 141.77 0.74 0.00 0.00 20 E4_Da KnownBoundary 0 0.00 0.00 4.11 8.42 4.07 0.00 3.93 6.12 1.30 7.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 5.56 0.00 0.00 0.00 21 E4a_E4b KnownJunction 0 3.26 73.74 201.23 377.47 66.98 150.48 6.09 148.48 133.22 210.41 2.68 0.00 0.00 0.00 0.00 0.00 0.00 46.47 65.88 117.61 2.41 0.00 0.00 22 ER4b ExonRegion 0 0.01 1.83 4.34 9.50 2.06 3.79 0.87 4.46 4.62 12.24 0.01 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.38 7.65 0.01 0.00 0.00 23 E4_Ab KnownBoundary 0 0.00 3.29 6.33 8.79 0.00 13.40 0.00 10.19 3.50 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 2.43 0.00 0.00 0.00 24 ER4c ExonRegion 0 4.90 67.01 192.72 375.10 59.99 138.97 5.89 135.49 181.65 239.23 0.29 0.00 0.00 0.00 0.00 0.00 0.00 44.54 56.08 141.80 0.88 0.66 0.00 25 E4_Db KnownBoundary 0 0.00 2.76 19.40 26.20 7.89 2.67 2.25 7.48 1.79 9.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.71 0.00 12.02 0.00 0.00 0.00 26 E4b_E4c KnownJunction 0 38.60 129.78 251.23 529.07 81.66 240.37 12.72 179.62 240.59 248.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.44 94.31 185.42 0.00 0.00 0.00 27 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 28 ER4d ExonRegion 0 0.55 5.81 13.49 57.65 8.63 9.52 1.20 10.62 9.41 18.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 2.24 14.23 0.01 0.00 0.00 29 E4_Ac KnownBoundary 0 2.82 12.63 10.14 74.78 27.59 22.49 2.21 14.42 5.76 17.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 0.00 13.74 0.00 0.00 0.00 30 ER4e ExonRegion 0 15.87 97.10 194.20 485.89 86.48 131.80 5.56 171.77 210.94 236.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.09 64.33 164.67 1.69 0.00 0.00 31 E4_Dc KnownBoundary 0 3.33 12.10 60.02 234.80 31.15 25.04 1.94 43.58 59.35 53.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.29 17.88 45.00 0.00 0.00 0.00 32 E4c_E5a KnownJunction 0 6.22 98.14 126.67 263.27 35.14 67.18 3.97 106.63 116.26 175.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.40 40.66 113.26 0.00 0.00 0.00 33 ER4f ExonRegion 0 1.61 8.66 34.76 150.60 22.51 45.21 3.55 27.02 47.82 48.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.37 13.57 33.33 0.00 0.00 0.00 34 E4_Dd KnownBoundary 0 3.78 14.87 39.12 131.62 20.80 58.26 6.54 32.53 35.62 50.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 4.80 41.99 0.00 0.00 0.00 35 ER4g ExonRegion 0 3.30 14.00 34.06 145.74 24.93 51.13 5.38 41.58 47.78 59.13 0.38 2.63 1.53 1.30 2.30 0.88 0.66 11.88 16.04 43.66 1.53 0.41 0.73 36 I4 Intron 0 1.25 9.63 20.54 89.49 12.90 25.44 1.79 18.08 21.18 27.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.67 9.97 14.76 0.00 0.18 0.50 37 I4_SR1 SilentIntronRegion 0 1.26 9.65 20.57 89.63 12.92 25.48 1.79 18.11 21.21 27.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 9.98 14.78 0.00 0.18 0.50 38 E5_Aa NovelBoundary 0 3.56 12.37 37.64 127.66 32.26 25.33 4.50 13.97 34.40 52.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 12.05 20.13 0.00 0.00 0.00 39 ER5a ExonRegion 0 4.52 80.62 170.05 450.85 73.98 164.73 6.04 127.95 175.35 208.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.92 62.86 119.76 0.00 0.00 0.00 40 E5a_E6a KnownJunction 0 6.74 56.37 142.04 585.81 81.49 175.86 17.22 154.27 162.79 232.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.10 97.79 84.56 0.00 0.00 0.00 41 ER6a ExonRegion 0 3.57 48.83 160.38 440.02 72.07 141.92 8.22 105.19 143.74 202.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.79 71.57 112.63 0.00 1.15 0.00 42 E6a_E7a KnownJunction 0 3.41 45.19 152.42 425.49 48.47 82.96 1.72 104.33 119.12 133.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.15 66.83 152.70 0.00 0.00 0.00 43 ER7a ExonRegion 0 4.34 56.36 161.78 461.22 47.39 105.88 4.52 131.58 143.91 173.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.24 54.23 113.56 1.68 0.00 0.00 44 E7_Da KnownBoundary 0 0.00 0.00 1.57 19.78 3.57 5.28 2.03 8.71 4.17 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 5.62 0.00 0.00 0.00 45 E7a_E7b KnownJunction 0 13.11 110.64 201.53 625.39 78.44 182.11 2.21 175.39 193.08 260.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.00 95.72 79.90 2.53 0.00 0.00 46 ER7b ExonRegion 0 0.03 0.94 6.54 22.52 2.15 8.26 0.97 9.36 10.21 10.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.31 4.38 6.19 0.01 0.00 0.00 47 E7_Ab KnownBoundary 0 0.00 5.85 10.11 48.71 3.99 31.35 0.00 16.31 6.63 15.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 4.42 3.07 0.00 0.00 0.00 48 ER7c ExonRegion 0 4.17 84.80 130.09 421.93 57.97 138.96 8.94 98.07 147.28 170.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.54 64.20 98.65 1.38 1.02 0.00 49 E7_Db KnownBoundary 0 0.00 6.58 55.35 287.38 15.20 28.51 2.16 21.73 47.95 62.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.85 25.41 29.53 3.15 0.00 0.00 50 E7b_E7c KnownJunction 0 0.00 58.34 69.63 149.17 23.51 100.28 0.00 55.08 77.20 93.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.94 23.53 70.18 0.00 0.00 0.00 51 ER7d ExonRegion 0 1.63 8.69 37.61 137.58 12.79 34.80 0.97 17.04 34.80 34.22 0.00 0.00 0.00 0.35 0.00 0.00 0.00 3.92 10.43 13.77 0.29 0.00 0.00 52 E7_Ac KnownBoundary 0 0.00 19.01 24.90 108.64 24.53 152.07 0.00 17.21 30.82 20.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 8.66 20.84 0.00 0.00 0.00 53 ER7e ExonRegion 0 2.32 37.22 76.62 258.66 68.81 116.43 4.57 66.63 88.59 112.56 0.00 0.22 0.00 0.08 0.79 0.18 0.40 18.33 35.04 92.44 1.34 0.25 0.71