Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010746.3 Gene 0 1.35 6.13 1.16 1.18 1.40 0.32 2.61 1.04 0.53 0.70 3.70 3.85 4.24 1.46 2.16 1.04 0.77 1.01 2.95 1.73 1.53 0.24 1.02 2 392308 Transcript 0 217.95 1464.35 1854.61 1460.68 751.69 1073.09 1402.05 459.75 275.15 438.03 1180.93 859.82 504.61 962.18 983.73 751.08 833.39 830.69 747.68 399.66 311.73 445.91 315.75 3 399556 Transcript 0 0.00 1.47 1.05 1.83 0.00 0.00 0.96 2.23 0.30 0.60 2.93 1.20 1.82 0.99 0.16 0.00 0.55 0.31 0.00 0.00 1.47 0.00 0.00 4 IG40_AR3 ActiveIntergenicRegion 0 72.80 165.35 64.06 240.43 165.58 121.58 85.98 86.85 102.74 125.23 20.27 82.53 46.36 24.07 20.04 19.71 20.01 36.44 51.81 90.42 19.10 63.88 31.61 5 IG40_SR2 SilentIntergenicRegion 0 81.32 74.59 32.57 64.36 89.08 47.86 28.40 33.34 42.91 52.50 10.91 14.80 10.14 23.26 21.99 6.23 7.35 17.52 41.10 35.90 5.69 21.31 7.96 6 IG40_AR2 ActiveIntergenicRegion 0 98.59 138.86 103.13 273.91 158.58 101.15 75.44 113.70 110.93 142.40 23.75 38.56 20.92 24.00 27.59 16.94 17.09 27.01 54.56 68.09 13.77 53.57 30.77 7 ER1a ExonRegion 0 0.92 0.92 0.56 2.29 0.00 0.00 1.01 0.00 1.60 0.00 0.00 5.00 0.36 1.17 1.12 1.30 0.00 2.01 0.00 2.78 0.00 0.00 1.28 8 E1_Da KnownBoundary 0 0.00 3.16 301.44 291.74 0.00 0.00 4.06 83.75 55.61 81.45 0.00 0.00 0.00 5.83 5.56 4.27 8.79 382.61 18.82 2.81 0.00 6.12 3.59 9 E1a_E1b KnownJunction 0 0.00 3.03 797.75 676.10 0.00 0.00 6.23 201.30 143.84 231.31 2.53 0.00 0.00 2.77 0.00 4.10 13.37 827.91 4.52 0.00 0.00 5.88 4.10 10 E1_Ab KnownBoundary 0 232.19 161.02 1590.13 1549.95 4.16 11.30 13.03 485.08 237.90 426.54 647.95 73.82 39.61 159.69 564.93 1679.56 639.46 2369.27 1473.36 366.69 229.01 646.56 645.52 11 ER1b ExonRegion 0 0.00 2.03 1.23 1.36 0.00 0.00 3.97 0.00 0.00 0.00 0.00 2.89 9.38 1.62 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 0 0.93 3.51 0.21 0.88 0.14 0.49 1.42 0.00 0.20 0.51 0.62 2.43 5.46 2.02 0.80 1.74 1.20 2.53 0.00 1.52 0.68 0.00 0.28 13 E1b_E2a KnownJunction 0 1291.19 8766.73 4352.45 3201.66 4497.03 6432.77 8397.05 1106.53 756.47 1197.24 7070.69 5150.28 3018.31 5764.70 5902.36 4487.80 4985.13 3064.36 4477.78 2392.93 1862.77 2667.03 1886.01 14 E1c_E2b KnownJunction 0 0.00 0.00 1.83 6.16 0.00 0.00 0.00 7.64 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2_Ab NovelBoundary 0 941.65 9811.74 3468.56 2510.20 854.84 1674.26 2997.54 844.69 558.15 1072.52 4850.49 3407.01 2264.46 3996.96 3405.16 2623.33 3861.89 1542.27 2571.37 1670.41 1576.13 1575.84 1024.78 17 ER2a ExonRegion 0 0.00 4.07 0.54 1.36 9.53 3.09 2.23 0.00 1.24 1.15 7.97 8.66 9.38 2.64 0.00 2.97 1.86 5.54 0.00 2.13 2.07 0.00 4.40 18 ER2b ExonRegion 0 0.00 3.23 2.43 0.89 2.95 0.63 2.46 0.89 0.40 1.06 5.36 1.15 3.88 1.61 0.00 1.60 0.57 1.99 2.54 0.07 0.88 0.00 1.54 19 E2_Da KnownBoundary 0 407.55 1035.93 955.91 704.91 53.23 30.21 115.09 199.70 168.26 317.08 460.12 159.80 187.00 148.74 341.06 849.95 302.29 397.46 395.59 251.77 171.80 286.14 392.33 20 E2a_E2c KnownJunction 0 12.97 12.30 1229.23 1030.01 3.57 2.67 6.76 291.63 239.38 415.04 4.42 0.00 0.00 3.00 0.00 7.60 0.00 670.09 3.76 2.88 5.56 2.57 0.00 21 E2_Ac KnownBoundary 0 214.41 391.31 1238.37 975.10 29.71 51.11 88.06 274.37 212.47 361.59 218.42 30.01 16.23 58.86 220.90 239.25 163.63 1035.22 268.24 115.05 117.38 251.06 140.25 22 ER2c ExonRegion 0 0.00 0.68 2.04 1.82 0.00 0.00 0.44 2.30 0.00 0.76 0.00 0.00 0.00 2.17 0.00 0.00 3.30 1.85 0.00 0.00 0.00 0.00 0.00 23 ER2d ExonRegion 0 0.00 0.83 1.06 2.04 0.00 0.00 0.66 2.40 0.00 1.04 0.00 0.00 0.00 1.33 0.00 0.00 1.95 0.25 0.00 0.00 0.00 0.00 0.00 24 E2_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E2b_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER2e ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.73 0.00 0.00 1.93 0.00 1.56 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER2f ExonRegion 0 1.62 5.55 1.68 0.43 0.51 0.35 4.23 1.33 0.71 0.75 5.12 4.28 4.43 2.22 2.52 0.57 0.63 0.00 4.89 1.63 2.89 0.40 0.56 29 E2_Dc KnownBoundary 0 99.87 50.39 19.96 44.52 61.12 5.91 24.91 36.31 20.80 14.24 29.64 62.12 42.04 6.12 50.68 39.48 43.29 4.73 4.89 19.75 0.00 9.19 13.32 30 E2c_E2e KnownJunction 0 3.56 0.00 4747.67 3854.92 0.00 0.00 0.00 1156.97 509.95 783.46 0.00 0.00 0.00 0.00 0.00 4.02 0.00 416.23 0.00 0.00 0.00 0.00 0.00 31 E2_Ae KnownBoundary 0 1667.63 6714.86 7352.85 6202.44 676.15 337.36 997.11 1902.39 849.64 1531.13 1232.94 4409.34 2265.92 822.07 1570.56 1285.13 1071.90 773.56 1173.02 1123.98 169.58 1456.93 472.23 32 ER2g ExonRegion 0 0.00 6.10 1.23 0.27 0.00 0.00 1.32 1.73 0.00 1.15 15.46 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.81 0.00 0.00 33 ER2h ExonRegion 0 3.23 17.08 0.64 1.86 3.28 0.00 2.93 1.96 0.00 0.88 5.52 6.38 7.16 0.00 5.99 0.93 1.01 0.00 5.84 3.27 1.86 0.65 1.79