Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCNYL1 Gene 0 34.28 23.55 29.26 28.78 42.27 54.97 61.92 40.86 32.82 29.53 42.14 63.27 102.10 64.59 67.40 41.58 53.36 17.18 18.84 21.60 25.59 54.86 28.70 2 392209 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 3 420822 Transcript 0 1.90 1.40 0.87 2.68 2.97 1.06 6.95 3.36 2.72 1.26 2.06 1.94 4.60 4.38 5.12 4.50 4.84 1.03 0.50 1.12 0.47 1.88 1.55 4 295414 Transcript 0 59.12 26.20 49.16 44.14 74.62 70.29 75.05 70.91 41.50 43.82 38.50 56.34 80.21 53.32 106.07 33.22 44.41 14.06 18.27 20.48 16.45 69.68 24.36 5 339882 Transcript 0 3.48 2.50 1.60 3.66 8.66 14.14 8.70 14.29 6.48 3.33 10.00 13.95 28.08 24.07 18.42 0.00 18.14 9.66 14.40 3.26 6.18 21.86 18.01 6 452312 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 420321 Transcript 0 1.06 0.77 1.15 0.51 1.01 0.46 3.74 3.86 2.08 0.64 0.00 0.00 1.94 1.93 4.54 1.12 0.00 1.27 1.20 1.07 0.55 0.00 0.37 8 468768 Transcript 0 4.00 2.40 3.85 1.92 3.16 5.63 8.15 3.61 3.34 0.81 4.11 1.68 9.81 3.20 1.93 2.06 6.24 4.34 2.23 2.34 1.56 3.44 1.39 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 11 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.04 0.00 0.72 0.09 0.00 0.00 1.90 2.03 0.00 0.00 12 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E1c NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.66 0.00 0.00 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E1e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 5.94 3.30 0.00 3.19 0.00 8.81 0.00 0.00 17 ER1d ExonRegion 0 0.16 1.60 0.00 0.00 1.81 1.02 0.67 0.00 0.97 0.53 6.51 1.20 0.00 2.00 0.45 11.89 12.85 0.17 2.45 0.10 10.92 0.00 4.88 18 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.73 2.21 0.00 3.12 1.56 4.84 6.30 0.00 4.41 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 19 ER1e ExonRegion 0 3.75 1.54 2.53 2.37 0.01 4.57 4.60 1.42 4.62 6.35 15.84 4.03 4.51 14.90 12.60 18.71 25.93 8.00 3.87 3.19 18.35 7.87 7.65 20 E1_Ae KnownBoundary 0 3.78 2.83 3.22 3.43 0.00 10.16 8.66 9.16 14.18 7.36 6.84 18.76 19.48 41.03 34.61 21.96 15.90 29.31 12.61 3.26 42.63 13.59 14.94 21 ER1f ExonRegion 0 1.61 3.30 11.60 5.38 9.40 20.81 10.58 11.60 13.98 13.83 22.28 6.39 19.02 49.24 34.37 21.87 45.23 29.72 4.07 10.76 38.13 21.23 22.57 22 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 2.14 0.00 0.00 2.68 0.00 0.00 5.18 4.45 7.52 4.68 0.00 0.00 0.00 0.00 2.82 0.00 23 E1b_E3a KnownJunction 0 6.30 19.14 26.79 13.58 19.86 35.04 47.74 19.67 15.83 27.72 53.96 17.41 62.01 83.00 56.49 95.19 50.68 47.26 23.06 51.84 55.72 73.42 34.49 24 ER1g ExonRegion 0 1.85 17.16 22.36 12.35 20.40 36.45 38.73 24.31 17.37 22.01 52.07 13.53 48.37 105.06 73.08 74.67 43.94 48.85 19.31 39.23 50.27 65.50 34.69 25 E2_Aa NovelBoundary 0 18.37 6.51 9.70 7.19 14.18 4.71 23.72 24.81 4.43 2.50 5.37 5.55 19.80 0.00 0.00 15.47 7.48 7.50 4.61 0.00 5.75 0.00 3.84 26 ER2a ExonRegion 0 3.80 2.79 1.74 5.36 5.93 2.13 11.69 4.58 5.44 2.53 1.43 3.87 9.21 3.58 5.79 1.47 5.01 2.06 1.01 2.25 0.93 0.94 3.10 27 ER3a ExonRegion 0 11.06 12.55 17.55 15.75 23.15 49.44 48.28 22.24 27.09 28.31 72.73 38.91 52.65 96.43 61.35 56.71 87.45 39.54 26.12 35.63 59.79 47.64 40.84 28 E3a_E4a KnownJunction 0 16.45 10.85 14.55 33.63 24.28 46.68 49.99 17.70 28.30 27.02 74.12 38.71 81.16 106.48 66.26 55.54 107.25 35.48 25.04 14.64 56.71 53.95 60.86 29 E4_Aa NovelBoundary 0 0.00 6.12 3.13 3.63 0.00 16.87 27.16 9.73 2.98 2.66 0.00 12.75 6.82 2.47 0.00 0.00 3.93 0.00 0.00 9.40 0.00 0.00 0.00 30 ER4a ExonRegion 1 13.61 6.74 13.90 22.39 20.18 56.85 52.20 25.98 25.37 31.79 79.69 37.23 108.27 96.06 76.68 34.48 96.20 34.32 33.31 12.10 45.65 53.40 53.61 31 E4_Da NovelBoundary 0 10.15 16.51 7.84 5.46 7.72 16.24 29.28 10.80 8.39 11.26 0.00 0.00 0.00 2.47 13.35 0.00 8.70 0.00 0.00 0.00 2.90 0.00 0.00 32 E4a_E5a KnownJunction 0 6.52 2.70 11.95 10.62 7.47 52.64 48.58 17.66 16.26 28.63 62.49 29.71 114.93 89.65 75.78 24.35 54.79 22.01 21.84 17.00 26.56 36.19 23.39 33 E4a_E6a KnownJunction 0 3.48 2.50 1.60 3.66 8.66 14.14 8.70 14.29 6.48 3.33 10.00 13.95 28.08 24.07 18.42 0.00 18.14 9.66 14.40 3.26 6.18 21.86 18.01 34 ER5a ExonRegion 0 14.79 13.25 23.29 14.65 21.06 48.37 53.92 27.40 30.79 31.42 64.90 45.82 118.41 81.53 64.26 57.74 72.42 32.73 15.14 33.94 26.92 67.09 36.02 35 E5_Da NovelBoundary 0 13.11 5.13 12.83 13.12 20.71 0.00 33.25 0.00 3.56 0.00 2.16 6.30 6.98 4.53 0.00 11.11 3.55 1.58 3.95 5.37 0.00 2.82 3.50 36 E5a_E6a KnownJunction 0 17.93 12.04 14.93 18.65 28.10 76.66 86.43 33.15 26.39 36.32 74.07 54.17 88.47 86.29 59.09 37.77 74.80 6.96 17.32 8.82 29.71 52.91 33.21 37 I5_AR1 ActiveIntronRegion 0 1.62 1.33 5.06 9.04 1.51 14.34 17.14 9.46 4.24 2.09 0.46 7.79 11.68 2.57 2.85 4.00 8.28 1.88 1.45 7.08 1.80 2.46 0.00 38 ER6a ExonRegion 0 12.99 14.01 22.16 22.60 38.50 81.25 77.41 41.29 36.78 31.44 83.01 112.09 89.24 110.12 53.35 51.43 84.63 17.14 27.52 16.19 39.73 69.39 29.20 39 E6a_E7a KnownJunction 0 10.89 22.23 13.72 30.67 40.24 76.32 76.05 16.31 22.97 22.13 61.44 82.83 76.29 92.59 59.58 75.19 63.30 14.92 19.01 21.73 26.19 56.95 11.78 40 E6a_E8a KnownJunction 0 0.00 0.00 8.87 0.00 4.33 10.39 11.61 8.38 15.28 0.00 18.69 54.77 6.49 28.90 8.90 16.92 12.81 2.28 0.00 0.00 9.20 8.33 8.54 41 E7_Aa NovelBoundary 0 3.78 6.12 4.79 4.06 7.30 19.65 27.20 1.93 7.93 0.00 4.90 0.00 20.29 6.71 9.27 7.69 4.49 5.84 8.09 0.00 0.00 0.00 3.84 42 ER7a ExonRegion 0 15.63 9.27 17.27 20.63 22.49 67.92 60.52 15.82 30.69 25.06 58.99 88.42 126.63 78.52 43.80 51.33 70.84 17.38 10.78 22.59 22.46 53.61 22.42 43 E7a_E8a KnownJunction 0 23.93 5.39 15.05 20.11 40.66 49.18 100.21 14.87 31.48 25.71 66.17 129.04 148.69 70.22 65.64 39.99 69.10 10.24 18.45 57.85 16.62 60.80 33.63 44 ER8a ExonRegion 0 25.36 21.51 21.42 21.15 41.94 73.63 80.13 27.09 40.24 39.06 69.66 115.06 186.07 102.23 70.97 65.84 112.42 14.28 27.14 28.11 26.19 75.21 28.75 45 E8_Ab KnownBoundary 0 38.23 25.98 18.21 25.40 66.72 132.03 76.27 37.01 42.13 51.79 88.44 92.73 133.43 104.19 54.02 50.24 103.13 17.66 38.50 26.14 36.70 89.77 19.89 46 ER8b ExonRegion 1 15.34 12.26 20.13 29.86 46.24 90.72 63.98 34.44 37.58 43.50 90.39 113.78 152.56 118.35 51.97 78.32 105.19 18.61 23.98 39.80 42.03 73.60 25.09 47 E8a_E9a KnownJunction 0 14.37 15.52 25.93 36.03 36.08 84.10 85.28 43.37 35.04 39.78 96.23 120.49 102.43 158.10 77.26 134.67 103.41 21.72 25.22 51.84 32.74 51.44 26.97 48 ER9a ExonRegion 0 23.52 28.99 26.14 34.51 53.74 81.98 83.83 36.20 42.00 38.47 64.82 107.61 162.66 133.98 70.12 91.94 119.62 23.77 27.20 49.50 63.25 70.53 36.79 49 E9_Da NovelBoundary 0 3.41 9.14 1.48 6.99 0.00 14.37 14.26 6.28 11.57 5.72 4.69 6.30 47.72 9.42 13.72 4.19 4.77 4.23 3.95 6.46 5.31 7.47 4.35 50 E9a_E11a KnownJunction 0 19.34 21.44 28.74 25.01 76.15 68.48 104.71 32.41 46.93 44.64 59.23 117.34 148.04 155.16 76.64 69.73 106.50 30.18 23.81 71.01 74.13 48.62 40.29 51 I9 Intron 0 6.59 6.13 4.87 8.36 8.86 9.36 19.43 9.71 10.22 7.68 7.67 12.34 20.85 11.63 10.15 11.70 14.02 12.56 5.87 5.43 5.37 8.47 6.87 52 I9_SR1 SilentIntronRegion 0 3.77 5.16 4.18 10.05 6.47 7.70 15.40 11.78 9.30 6.49 7.52 13.62 19.34 11.71 13.56 16.49 22.75 17.51 2.09 7.63 9.00 10.03 3.94 53 I9_AR2 ActiveIntronRegion 0 7.23 8.24 4.78 10.08 10.46 11.02 23.73 12.57 12.01 9.03 7.78 17.55 25.63 11.23 8.94 11.98 15.72 11.65 7.56 5.19 4.56 8.87 7.96 54 I9_SR2 SilentIntronRegion 0 14.18 5.34 9.06 7.45 11.73 11.50 20.93 14.35 13.18 7.93 9.76 10.66 18.22 16.38 10.82 16.54 18.53 13.31 8.11 6.51 6.34 9.99 7.35 55 E10_Aa NovelBoundary 0 16.67 6.51 6.06 9.02 11.88 15.16 30.65 9.49 22.28 12.25 6.84 5.25 6.82 7.42 8.90 10.85 14.12 18.65 0.00 3.26 10.44 15.19 18.52 56 ER10a ExonRegion 0 8.00 4.80 7.70 3.84 6.32 11.26 16.29 7.22 5.32 1.61 8.21 3.37 19.63 6.41 3.87 4.13 12.47 8.67 4.45 1.42 3.12 6.89 2.77 57 E10_Da NovelBoundary 0 7.26 13.22 7.54 18.18 3.99 9.26 26.63 12.69 8.97 9.29 4.90 0.00 32.95 21.48 4.45 7.69 24.68 17.99 4.80 3.26 2.78 5.57 4.35 58 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 59 I10 Intron 0 11.19 8.85 5.11 6.95 9.15 12.55 16.47 12.82 8.59 2.66 7.21 8.00 19.39 11.02 10.72 9.24 16.42 7.72 2.97 1.98 2.74 11.66 2.74 60 I10_SR1 SilentIntronRegion 0 11.33 8.96 5.17 7.02 9.27 12.69 16.67 12.97 8.70 2.69 7.30 8.10 19.63 11.16 10.85 9.36 16.63 7.78 3.01 2.01 2.78 11.81 2.77 61 E11_Aa NovelBoundary 0 38.90 2.50 17.44 19.91 3.31 28.11 32.19 27.07 25.35 7.60 15.69 18.76 0.00 16.95 30.16 11.96 20.48 17.33 8.47 0.00 11.31 7.59 8.11 62 ER11a ExonRegion 0 28.87 29.69 34.60 31.14 60.88 75.66 96.80 43.12 58.94 46.53 82.86 119.64 206.81 141.50 91.10 93.49 145.28 31.72 40.54 47.68 56.74 87.55 44.66 63 E11_Da NovelBoundary 0 13.63 14.60 17.50 21.54 6.28 16.69 35.64 24.19 27.75 24.34 21.22 22.06 77.11 21.43 13.23 15.81 51.71 7.67 13.93 23.78 22.73 22.60 19.38 64 E11b_E12a KnownJunction 0 50.75 66.90 38.47 32.16 54.58 56.05 135.58 63.62 71.99 55.98 59.70 101.73 238.62 143.56 103.10 65.03 123.70 24.33 44.42 63.41 42.13 98.52 46.52 65 E11b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 2.12 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER11b ExonRegion 0 41.06 63.45 39.46 32.16 54.05 63.08 130.28 52.20 70.90 46.33 77.70 103.04 240.13 123.76 114.31 63.60 143.26 18.85 40.77 62.13 35.26 92.92 42.29 67 ER12a ExonRegion 0 73.06 71.68 40.31 55.29 84.59 110.00 130.91 69.73 59.29 45.90 74.42 156.45 295.47 103.60 101.61 73.28 99.05 24.86 27.34 53.38 35.87 114.70 54.03 68 E12_Da KnownBoundary 1 64.53 65.25 34.53 62.50 124.02 117.55 123.96 80.30 62.50 51.57 84.71 190.26 477.73 56.39 124.36 111.17 46.84 33.00 42.26 53.82 31.01 120.32 53.69 69 ER12b ExonRegion 0 54.86 47.87 49.18 55.66 63.13 89.26 102.36 74.63 53.73 44.86 69.01 142.98 243.16 104.85 105.02 65.40 71.53 19.23 29.90 37.76 29.33 100.53 49.74 70 E12_Db KnownBoundary 0 75.35 44.33 66.26 46.75 39.39 53.49 102.41 53.27 34.72 45.85 35.80 89.43 156.65 108.72 121.02 31.53 34.60 7.75 11.58 23.33 20.32 93.32 58.90 71 ER12c ExonRegion 0 43.29 24.28 36.17 27.78 39.40 62.57 72.54 39.34 37.62 32.31 46.22 55.32 70.34 79.36 80.07 50.64 52.70 25.19 28.85 14.97 38.47 53.18 41.35 72 E12_Dc KnownBoundary 0 63.86 32.23 24.25 34.63 162.14 145.03 151.43 42.63 32.90 33.93 38.11 43.66 6.49 78.11 133.01 39.14 78.07 19.48 34.35 14.25 71.48 66.13 45.50 73 ER12d ExonRegion 0 59.12 26.20 49.16 44.14 74.62 70.29 75.05 70.91 41.50 43.82 38.50 56.34 80.21 53.32 106.07 33.22 44.41 14.06 18.27 20.48 16.45 69.68 24.36 74 E12_Dd NovelBoundary 0 0.00 5.00 3.73 2.00 7.22 7.33 16.38 15.12 1.79 4.30 0.00 0.00 5.84 0.00 0.00 0.00 4.77 0.00 0.00 2.88 0.00 0.00 0.00 75 I12_SR1 SilentIntronRegion 0 6.76 3.56 7.74 1.71 4.56 3.59 16.91 10.68 6.13 5.96 1.10 2.03 2.43 1.53 4.12 0.00 1.93 1.20 2.26 3.32 0.00 0.30 1.58 76 I12_AR2 ActiveIntronRegion 0 4.60 6.98 13.64 3.79 4.77 7.18 16.46 16.38 9.77 6.28 0.00 0.00 0.00 0.78 2.90 0.00 5.88 3.70 3.05 3.24 0.00 0.00 1.40 77 I12_AR3 ActiveIntronRegion 0 6.35 12.57 14.93 2.85 3.41 11.00 24.79 13.67 9.09 6.26 0.00 0.00 0.00 1.62 2.90 0.00 8.70 3.70 3.19 2.13 0.00 1.14 0.00 78 I12_SR2 SilentIntronRegion 0 6.35 14.24 15.93 2.73 2.68 11.00 32.44 16.42 11.12 6.12 0.00 0.00 0.00 1.62 0.48 0.00 9.90 3.70 3.19 1.77 0.00 2.08 0.00 79 I12_AR4 ActiveIntronRegion 0 6.45 13.40 15.65 3.10 2.68 7.92 29.97 16.73 11.12 5.73 0.00 0.00 0.00 0.96 0.00 0.00 7.35 2.69 1.59 2.13 0.00 2.08 0.00 80 ER13a ExonRegion 0 2.13 1.53 2.29 1.02 2.02 0.92 5.58 7.72 4.16 1.29 0.00 0.00 3.88 1.74 3.89 2.24 0.00 2.54 2.40 2.14 1.11 0.00 0.74