Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 OSGEPL1 Gene 0 54.74 87.76 53.07 71.01 55.79 81.99 51.29 24.60 24.37 41.29 25.06 35.70 30.75 35.52 31.19 25.22 38.71 27.61 28.18 37.56 9.11 20.17 16.72 2 413448 Transcript 0 24.63 44.61 11.98 24.83 19.32 25.36 17.62 11.00 9.34 6.67 10.74 19.45 17.24 21.96 14.73 14.82 14.75 8.06 18.00 17.82 6.84 10.69 2.48 3 264151 Transcript 0 83.08 109.82 84.95 115.17 86.51 122.13 72.87 36.77 30.95 56.50 45.22 68.96 47.37 60.29 61.84 44.96 67.59 52.49 54.07 63.24 11.31 31.64 28.43 4 IG49 Intergenic 0 14.33 9.20 32.05 26.05 24.29 30.30 25.23 18.33 14.03 11.84 4.34 16.72 10.90 6.23 5.83 5.22 3.71 2.94 5.94 12.89 1.12 4.98 2.74 5 IG49_AR5 ActiveIntergenicRegion 0 7.49 15.58 15.33 26.04 22.08 22.14 24.98 15.95 10.58 16.11 7.69 24.40 27.11 8.33 2.52 2.63 6.80 2.03 3.76 16.30 1.30 11.67 4.76 6 IG49_SR4 SilentIntergenicRegion 0 9.78 6.08 24.75 23.45 20.94 28.69 28.86 15.73 10.49 7.38 4.74 20.65 7.98 6.74 5.46 5.87 2.36 2.21 5.08 13.24 0.13 4.43 1.76 7 IG49_AR4 ActiveIntergenicRegion 0 25.22 13.36 56.78 45.58 46.85 57.18 45.74 29.30 22.17 17.97 6.92 34.19 20.47 9.65 10.29 9.46 5.44 4.36 7.34 17.08 1.47 7.74 3.37 8 IG49_SR3 SilentIntergenicRegion 0 16.33 10.63 43.58 28.28 25.18 29.07 19.93 21.30 19.06 17.08 2.93 7.59 6.59 5.93 7.96 4.40 4.45 4.00 8.47 13.43 2.27 2.81 3.27 9 IG49_AR3 ActiveIntergenicRegion 0 22.38 9.09 39.76 23.82 20.76 32.81 17.11 23.24 17.27 11.66 1.91 4.33 5.21 3.34 5.12 3.89 3.26 4.77 7.77 11.06 1.20 2.62 2.39 10 ER1a ExonRegion 0 17.40 21.31 6.80 9.15 14.44 37.84 19.67 7.21 9.04 11.61 9.21 4.80 3.39 8.09 8.68 9.14 14.39 15.02 12.36 16.06 6.17 6.27 10.63 11 E1_Da NovelBoundary 0 6.30 39.27 8.28 21.18 8.66 11.53 30.43 7.15 9.84 7.28 2.42 6.75 6.66 0.00 5.81 12.13 8.70 20.56 35.39 15.21 8.03 0.00 4.35 12 E1a_E2a KnownJunction 0 25.78 44.07 9.55 23.47 21.73 116.30 27.73 14.66 6.19 35.89 11.69 12.60 0.00 16.72 4.70 14.44 17.11 20.56 20.99 20.13 8.15 10.90 7.43 13 I1_AR1 ActiveIntronRegion 0 9.42 7.11 5.09 10.57 7.23 8.37 8.70 4.88 11.15 8.85 5.06 4.91 6.13 7.96 3.63 2.68 6.93 11.38 6.63 18.22 5.77 4.83 5.42 14 I1_SR1 SilentIntronRegion 0 10.06 13.01 6.07 19.57 12.45 6.21 17.24 4.38 15.30 9.28 1.80 10.20 17.54 5.33 6.34 6.05 3.52 3.83 3.79 12.01 0.91 6.69 5.46 15 E2_Aa NovelBoundary 0 3.70 12.23 5.94 26.00 12.05 18.63 25.00 6.12 5.90 5.26 0.00 13.80 6.82 7.30 8.90 4.36 0.00 2.20 0.00 0.00 0.00 5.69 4.10 16 ER2a ExonRegion 0 14.73 29.85 21.28 45.18 45.42 70.97 48.93 20.50 19.71 49.04 37.25 36.99 25.07 32.38 23.21 26.14 58.03 31.47 30.02 30.12 10.52 27.58 23.36 17 E2_Da NovelBoundary 0 0.00 3.35 1.12 1.63 6.88 8.69 16.47 4.48 4.28 7.55 2.53 6.30 0.00 2.47 8.90 0.00 4.77 6.05 0.00 5.82 0.00 3.12 12.29 18 E2a_E3a KnownJunction 0 22.23 25.92 46.95 57.87 74.79 221.86 100.29 13.35 22.77 34.33 46.59 47.87 13.15 52.68 27.20 27.43 53.95 26.16 24.47 20.39 23.85 49.11 23.39 19 Ix Intron 0 12.99 13.65 4.86 14.54 8.11 8.84 10.17 4.93 8.74 7.77 1.35 8.27 9.96 6.72 6.40 6.50 5.91 4.12 2.85 9.36 1.86 4.76 3.65 20 Ix_AR3 ActiveIntronRegion 0 11.25 9.27 2.99 10.53 11.22 9.77 12.37 5.20 5.62 6.55 0.64 4.79 5.83 4.82 3.57 2.10 1.66 3.85 0.23 9.33 2.09 3.48 5.14 21 Ix_AR2 ActiveIntronRegion 0 20.09 24.00 9.13 23.06 10.63 12.02 14.46 7.36 12.68 12.48 1.91 10.08 15.02 10.86 12.20 9.92 8.45 4.84 4.78 10.03 1.78 7.70 5.19 22 Ix_SR1 SilentIntronRegion 0 28.31 47.16 8.31 28.80 14.70 10.67 13.08 9.66 9.69 12.42 2.45 27.80 15.48 4.95 4.30 3.04 4.41 2.65 3.11 10.74 0.72 4.97 0.00 23 Ix_AR1 ActiveIntronRegion 0 11.40 13.05 1.98 5.94 4.66 7.39 5.55 4.46 2.59 2.81 1.75 4.33 3.03 1.36 5.80 0.00 0.21 0.00 0.00 5.97 1.64 0.00 0.00 24 E3_Aa NovelBoundary 0 53.12 50.85 6.83 39.62 11.71 24.47 22.26 18.44 8.01 9.83 5.11 6.30 22.89 4.53 4.45 3.59 0.00 7.13 17.60 14.96 6.18 5.82 4.35 25 ER3a ExonRegion 0 47.49 72.93 23.47 25.50 28.57 82.77 45.73 12.10 12.99 23.00 10.80 19.65 18.62 18.30 10.67 11.83 22.85 15.10 9.64 15.06 4.38 14.18 7.40 26 E3_Da NovelBoundary 1 51.12 104.32 14.40 26.40 16.30 34.53 14.00 11.05 22.08 6.39 0.00 11.85 38.80 4.94 8.90 7.69 3.74 1.78 4.71 17.19 2.53 8.08 4.10 27 E3a_E4a KnownJunction 1 47.27 127.48 75.34 70.72 115.03 132.71 68.36 35.28 30.06 45.56 26.90 44.11 100.97 48.27 28.56 35.55 71.25 24.95 20.89 65.58 11.06 17.64 7.94 28 E4_Aa NovelBoundary 0 19.11 43.94 11.29 31.13 29.12 14.20 23.23 7.06 14.84 13.38 0.00 15.00 6.01 19.66 4.45 0.00 7.48 10.65 0.00 23.59 3.09 11.82 7.51 29 ER4a ExonRegion 0 73.14 115.32 80.67 115.27 75.78 124.38 83.91 36.10 31.22 57.69 32.09 66.25 64.81 62.96 48.46 35.84 47.36 36.56 28.51 60.61 11.99 24.79 17.68 30 E4_Da KnownBoundary 0 55.79 81.17 32.76 52.47 15.53 53.38 37.76 14.54 19.15 13.70 12.37 31.51 14.45 36.38 35.23 19.91 35.72 17.04 3.86 27.48 8.34 3.00 3.33 31 E4a_E4b KnownJunction 0 162.18 145.30 52.39 106.01 118.17 144.24 88.41 14.17 15.74 42.63 40.80 90.18 77.27 87.17 95.06 53.40 57.97 39.92 38.50 43.34 3.15 35.64 19.55 32 ER4b ExonRegion 0 24.63 44.61 11.98 24.83 19.32 25.36 17.62 11.00 9.34 6.67 10.74 19.45 17.24 21.96 14.73 14.82 14.75 8.06 18.00 17.82 6.84 10.69 2.48 33 E4_Ab NovelBoundary 0 11.11 13.35 9.28 13.68 10.61 13.51 23.41 7.27 11.08 3.65 0.00 0.00 0.00 4.65 14.22 29.56 13.93 0.00 0.00 18.66 0.00 9.37 3.84 34 E4_Db NovelBoundary 0 63.64 84.52 39.03 92.10 61.46 86.83 44.83 8.34 22.54 26.22 31.53 35.56 44.96 32.61 14.59 28.28 34.97 33.00 38.78 27.48 8.53 15.00 10.67 35 ER4c ExonRegion 0 120.64 128.12 66.78 113.57 95.88 144.56 77.23 12.96 26.55 46.83 51.87 81.54 78.95 82.83 82.20 56.47 52.26 44.96 48.31 58.51 5.88 33.34 16.64 36 ER4d ExonRegion 0 118.94 159.61 98.49 141.17 108.35 147.04 93.51 39.01 43.79 66.04 53.07 91.56 66.72 84.05 63.15 63.46 88.40 73.78 65.88 90.37 17.26 40.44 28.99 37 E4_Dc NovelBoundary 1 17.26 19.01 12.63 26.50 15.62 8.35 14.66 6.82 14.38 11.90 0.00 0.00 39.12 13.19 4.45 7.18 11.97 6.34 7.15 18.28 2.84 7.41 7.00 38 E4c_E5a KnownJunction 0 79.05 89.13 102.21 151.30 88.03 94.77 99.85 36.43 42.85 69.81 80.49 68.42 56.33 72.81 67.99 72.97 95.65 83.65 61.18 104.70 18.04 48.74 31.16 39 Ix Intron 0 9.71 31.75 7.32 14.55 8.82 5.78 10.62 6.64 8.17 4.65 0.55 12.30 11.34 6.58 2.76 4.26 4.73 1.58 5.48 9.14 1.58 6.27 4.21 40 Ix_AR1 ActiveIntronRegion 0 9.76 31.92 7.36 14.63 8.87 5.81 10.68 6.68 8.22 4.68 0.56 12.36 11.41 6.62 2.78 4.28 4.76 1.59 5.50 9.19 1.59 6.30 4.23 41 Ix Intron 0 3.61 37.81 1.87 9.70 7.76 3.75 4.74 3.51 3.14 4.08 0.33 6.82 14.45 4.45 2.79 3.04 2.25 0.78 0.54 3.99 0.38 5.33 1.50 42 Ix_AR1 ActiveIntronRegion 0 3.62 37.94 1.88 9.73 7.78 3.77 4.76 3.53 3.15 4.09 0.33 6.84 14.50 4.46 2.80 3.05 2.26 0.79 0.55 4.01 0.38 5.35 1.51 43 E5_Aa NovelBoundary 1 2.96 0.00 6.77 28.20 19.86 2.61 14.44 8.42 4.80 6.82 0.00 12.60 25.65 35.08 26.82 15.47 4.21 0.00 17.41 7.48 12.36 8.27 0.00 44 ER5a ExonRegion 0 78.67 149.31 107.29 135.07 96.65 167.91 84.32 52.79 43.15 64.82 58.78 90.92 61.76 91.74 63.27 65.45 97.34 76.80 63.37 73.67 18.71 36.82 41.11 45 E5_Da NovelBoundary 0 22.52 21.64 13.93 33.50 11.54 7.78 16.56 15.24 11.49 8.78 0.00 6.30 19.97 33.37 0.00 7.43 13.56 6.92 9.22 17.58 6.30 5.94 7.68 46 E5a_E6a KnownJunction 1 62.97 95.18 67.24 101.09 132.00 174.10 103.08 51.30 41.15 67.24 45.91 82.08 31.98 42.38 23.98 19.82 96.12 71.38 52.61 90.44 4.94 34.41 39.18 47 Ix Intron 0 3.48 15.06 1.50 11.69 15.41 6.79 9.80 3.18 5.30 4.22 3.18 8.80 18.50 19.57 4.07 18.34 4.07 5.68 2.62 11.38 4.53 9.43 1.21 48 Ix_SR1 SilentIntronRegion 0 3.54 15.29 1.53 11.89 15.66 6.90 9.92 3.23 5.39 4.28 3.23 8.94 18.80 19.89 4.14 18.64 4.14 5.76 2.66 11.55 4.59 9.56 1.20 49 E6_Aa NovelBoundary 0 7.19 45.45 11.74 31.83 7.05 4.83 15.77 3.45 22.77 1.21 2.68 12.60 21.10 9.83 6.30 8.72 8.79 9.24 0.00 16.68 0.00 2.63 4.35 50 ER6a ExonRegion 0 65.88 110.89 84.94 117.30 115.09 161.65 69.64 47.58 32.04 62.97 53.64 65.66 60.45 66.99 68.90 47.93 58.36 64.21 92.60 66.73 24.09 36.14 37.97 51 E6_Da NovelBoundary 1 37.41 88.41 24.54 48.61 30.39 2.10 35.15 18.07 12.88 14.67 2.21 5.85 55.35 21.43 8.90 0.00 11.41 11.73 0.00 20.33 9.33 6.12 0.00 52 E6a_E7a KnownJunction 1 71.64 92.88 148.31 162.55 39.90 147.13 64.79 51.71 24.51 70.22 41.01 115.09 21.26 51.74 114.10 63.66 87.52 62.47 89.32 64.68 8.40 33.07 34.32 53 Ix Intron 0 21.33 35.90 13.27 27.42 22.95 15.94 18.38 9.41 14.16 10.45 3.42 10.44 17.45 14.28 7.83 12.92 10.41 7.61 6.74 12.52 4.49 7.13 7.79 54 Ix_SR1 SilentIntronRegion 0 21.36 35.95 13.29 27.46 22.98 15.96 18.41 9.43 14.18 10.47 3.42 10.45 17.47 14.30 7.84 12.94 10.43 7.62 6.75 12.54 4.50 7.14 7.81 55 E7_Aa NovelBoundary 1 24.15 42.69 19.90 51.61 45.84 13.97 12.32 15.40 17.77 16.82 2.21 52.97 55.68 31.79 18.67 8.20 25.43 1.53 8.00 19.30 0.00 14.21 0.00 56 ER7a ExonRegion 0 82.23 103.81 87.00 106.52 72.15 112.50 66.78 31.24 24.07 49.81 46.01 55.84 43.26 73.40 64.37 42.61 65.77 33.57 40.28 53.95 11.72 24.28 31.56 57 E7_Da NovelBoundary 0 32.82 18.48 15.26 35.86 23.85 14.03 29.10 10.51 12.73 17.46 4.74 12.45 33.28 12.42 10.14 0.00 11.22 0.00 0.00 12.53 2.59 11.94 14.60 58 E7a_E8a KnownJunction 0 27.34 6.12 7.54 11.69 11.54 7.89 4.24 8.21 3.21 9.16 12.21 0.00 21.43 4.77 18.79 0.00 0.00 3.86 9.60 2.75 0.00 5.27 7.68 59 Ix Intron 0 34.89 41.88 23.18 34.47 26.78 14.74 22.71 13.93 15.70 12.30 4.64 12.79 17.43 15.80 12.74 10.57 10.02 6.57 8.01 13.78 2.74 6.75 4.59 60 Ix_SR2 SilentIntronRegion 0 19.61 17.67 17.07 27.58 23.79 16.77 27.72 8.56 13.05 9.02 5.25 12.85 18.34 14.05 10.84 11.20 10.46 4.58 5.77 8.99 2.99 8.95 2.22 61 Ix_AR2 ActiveIntronRegion 0 23.51 18.32 17.81 21.21 30.69 13.94 16.46 10.30 12.60 7.90 2.43 14.12 13.59 12.87 5.64 6.72 4.25 5.42 5.34 11.98 1.68 5.64 6.16 62 Ix_SR1 SilentIntronRegion 0 44.19 58.42 27.33 41.77 26.72 14.53 23.49 17.11 17.84 15.06 5.27 12.39 18.64 17.60 16.00 11.85 12.03 7.70 9.78 16.14 3.06 6.46 4.86 63 E8_Aa NovelBoundary 0 111.72 228.58 105.56 137.18 75.13 172.34 71.01 48.63 40.60 87.97 37.38 24.16 6.33 67.69 36.84 56.22 69.94 69.77 43.58 62.96 13.90 27.13 31.41 64 ER8a ExonRegion 0 81.87 145.99 94.07 118.99 83.22 64.01 54.09 35.28 38.94 62.28 20.22 29.86 33.24 27.82 38.80 20.26 28.76 15.22 27.38 41.81 6.82 21.62 12.74