Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FASTKD2 Gene 0 46.61 57.48 59.70 75.84 67.86 89.37 83.04 51.74 41.88 56.67 103.46 147.75 86.70 92.78 81.77 75.65 81.72 30.15 37.20 53.73 35.26 58.01 34.22 2 236980 Transcript 0 24.98 30.83 33.30 55.11 34.86 39.61 34.74 32.28 23.64 32.59 20.28 53.97 20.36 23.47 24.57 16.61 13.18 9.16 12.12 21.66 6.80 24.21 8.99 3 418289 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 402774 Transcript 1 0.00 6.71 4.64 2.06 0.00 0.00 2.25 9.98 2.31 7.92 56.70 36.01 0.00 19.48 4.45 8.12 32.82 0.00 18.07 5.82 24.03 3.12 7.85 5 403094 Transcript 0 0.00 0.00 1.85 3.07 0.89 0.61 0.09 0.06 1.68 0.61 0.84 3.86 0.00 4.96 0.39 1.88 9.34 0.00 1.27 0.50 0.51 2.89 1.08 6 487777 Transcript 0 24.93 17.12 23.34 29.95 30.62 26.43 35.27 29.12 16.58 17.24 10.96 21.63 27.58 9.79 16.06 8.78 11.06 5.48 7.10 13.52 3.67 20.63 6.11 7 471788 Transcript 0 5.33 4.25 4.96 9.84 6.60 3.42 7.83 4.44 6.46 5.39 3.45 14.32 13.95 2.02 2.76 1.71 11.17 2.56 1.96 8.14 6.52 4.36 0.37 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.28 3.00 0.00 0.00 0.00 6.43 1.56 0.00 0.00 0.00 7.90 0.00 0.00 1.02 1.26 3.95 4.78 1.74 0.00 1.08 1.71 1.49 2.02 10 E1_Ac KnownBoundary 0 2.89 0.00 0.00 0.00 0.00 2.78 2.25 0.00 0.00 0.00 7.84 0.00 0.00 0.00 6.30 23.33 3.46 6.51 0.00 3.13 5.99 0.00 3.16 11 ER1c ExonRegion 0 1.03 1.28 0.14 0.10 0.00 0.47 0.65 0.10 0.09 0.00 3.33 0.00 0.22 0.04 1.96 5.74 2.23 1.91 1.89 0.42 1.28 0.07 0.17 12 E1_Da KnownBoundary 0 3.19 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 7.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1d ExonRegion 0 0.46 0.12 0.63 1.18 0.46 0.02 0.66 0.00 0.00 0.00 7.89 3.79 0.00 2.16 1.19 2.60 2.03 0.04 0.00 1.69 3.83 2.23 0.00 15 E1_Ad KnownBoundary 0 3.04 0.00 2.66 0.00 3.82 0.00 0.00 0.00 0.00 1.18 0.00 5.85 0.00 4.83 0.00 7.35 4.58 0.00 0.00 2.88 3.15 8.08 3.24 16 ER1e ExonRegion 1 50.85 62.10 23.79 19.68 66.96 127.65 147.15 10.37 13.04 12.53 93.01 1.90 5.38 141.26 83.71 153.54 113.60 21.54 67.36 62.69 83.74 84.05 66.54 17 E1_Db KnownBoundary 0 32.67 60.45 32.23 45.82 82.77 81.37 120.83 10.51 16.93 16.12 62.96 5.25 0.00 123.85 76.40 123.30 71.72 87.38 148.52 69.09 44.85 57.62 82.12 18 E1b_E2a KnownJunction 1 90.91 104.72 29.89 28.57 75.55 208.69 253.41 23.04 24.80 26.00 159.99 5.85 26.13 134.56 85.91 267.37 169.52 12.19 52.90 90.00 89.64 83.71 93.56 19 ER1f ExonRegion 1 92.22 131.60 46.56 40.89 125.38 255.68 289.76 26.42 28.94 39.16 211.51 8.66 14.07 288.40 153.77 326.51 237.66 58.86 165.64 125.84 129.70 126.20 138.02 20 ER1g ExonRegion 0 11.81 31.31 17.93 13.67 29.55 39.02 40.72 11.43 18.50 17.71 65.34 36.82 21.33 55.71 29.57 78.49 46.28 35.76 73.33 26.40 40.07 16.74 30.82 21 E1c_E2a KnownJunction 0 0.00 6.71 4.64 2.06 0.00 0.00 2.25 9.98 2.31 7.92 56.70 36.01 0.00 19.48 4.45 8.12 32.82 0.00 18.07 5.82 24.03 3.12 7.85 22 E1d_E2a KnownJunction 0 0.00 0.00 1.33 3.33 0.00 0.00 0.00 0.00 1.79 0.00 0.00 5.70 0.00 5.47 0.00 0.00 9.44 0.00 0.00 0.00 0.00 3.00 0.00 23 ER1h ExonRegion 0 0.00 0.00 2.37 2.82 1.78 1.22 0.18 0.12 1.56 1.22 1.68 2.02 0.00 4.44 0.77 3.76 9.24 0.00 2.55 0.99 1.03 2.78 2.15 24 I1 Intron 0 4.84 5.19 10.60 6.61 6.12 3.22 9.20 6.34 2.59 3.01 3.40 6.02 10.75 7.69 7.91 2.87 4.35 4.36 13.44 7.67 3.88 2.56 4.65 25 I1_AR1 ActiveIntronRegion 0 4.90 4.52 12.62 3.94 1.76 0.65 4.43 3.35 2.25 3.11 5.12 0.93 2.23 8.52 10.15 3.85 4.29 8.61 15.81 12.24 2.87 1.63 5.33 26 ER2a ExonRegion 0 35.54 79.77 58.79 94.25 86.49 155.22 121.07 57.40 71.04 85.42 237.80 315.29 193.54 173.34 84.72 161.07 175.24 52.15 72.41 106.00 63.81 107.34 75.39 27 E2_Da KnownBoundary 0 59.49 90.97 101.68 161.02 171.99 197.44 152.94 84.24 99.04 111.29 292.60 661.57 394.62 214.85 104.09 147.06 194.48 63.17 35.01 119.08 25.76 110.71 51.30 28 ER2b ExonRegion 0 50.01 103.28 95.25 136.65 127.49 207.34 154.49 82.49 85.68 111.68 295.49 472.95 272.91 289.38 154.99 259.87 236.45 91.32 91.30 148.01 121.01 134.99 107.67 29 E2_Db NovelBoundary 0 17.34 23.35 8.01 29.43 22.41 10.62 30.56 21.44 23.78 17.33 15.37 11.85 42.37 16.95 5.93 33.41 4.58 10.94 13.65 26.08 11.86 8.21 7.60 30 E2b_E3a KnownJunction 0 31.78 105.97 84.53 85.67 94.06 147.53 194.58 78.82 49.62 84.21 214.16 141.05 127.10 260.99 214.72 215.07 230.11 76.65 42.26 138.64 127.20 75.87 56.94 31 I2 Intron 0 11.40 11.52 13.19 20.08 20.32 13.59 27.64 12.14 11.16 12.45 9.64 35.00 29.52 15.04 8.09 10.74 13.44 5.66 9.17 17.00 4.18 10.20 9.53 32 I2_SR1 SilentIntronRegion 0 9.07 15.16 8.30 19.32 17.66 12.73 34.05 8.17 10.88 10.40 6.46 33.29 38.02 15.95 6.93 12.48 11.88 4.49 9.56 18.42 4.72 8.04 6.29 33 I2_AR1 ActiveIntronRegion 0 7.71 11.47 19.11 21.32 23.07 10.22 23.18 18.71 12.93 16.00 8.76 35.70 17.93 14.80 7.48 10.40 14.03 7.19 5.57 15.65 2.94 12.91 13.17 34 I2_SR2 SilentIntronRegion 0 11.19 9.43 12.41 20.18 25.50 13.08 24.44 13.46 9.08 10.72 13.26 31.25 25.54 14.03 8.35 8.79 15.18 6.90 7.98 16.16 2.95 8.70 12.43 35 I2_AR2 ActiveIntronRegion 0 20.14 7.15 14.89 19.87 17.34 19.67 25.05 9.77 11.18 13.03 13.25 40.31 32.79 14.70 10.63 9.84 14.01 4.77 13.96 17.03 5.83 11.82 8.22 36 E3_Aa NovelBoundary 0 31.49 9.01 17.06 29.53 29.20 29.36 65.40 11.13 10.94 16.73 19.64 44.26 34.58 22.54 13.85 4.36 13.93 6.38 9.13 24.10 5.25 26.02 23.99 37 ER3a ExonRegion 0 66.65 119.26 103.81 125.45 129.00 201.82 168.47 74.92 73.42 99.37 300.06 274.09 172.85 279.90 197.82 204.28 213.51 89.97 79.21 138.46 94.67 101.01 86.74 38 E3a_E4a KnownJunction 0 86.02 121.49 100.03 181.76 99.66 243.10 140.13 99.23 75.38 116.50 321.24 368.22 189.60 282.07 220.78 229.17 240.39 76.77 62.31 133.71 107.12 99.14 113.45 39 I3_AR1 ActiveIntronRegion 0 5.58 8.13 15.22 18.94 12.97 4.82 10.58 7.25 12.62 10.48 4.51 8.14 16.87 2.69 4.34 2.54 4.09 3.50 7.98 5.13 2.91 12.81 5.14 40 E4_Aa NovelBoundary 1 21.04 20.46 40.80 35.46 8.15 6.81 6.18 22.88 13.77 21.19 4.74 30.76 46.75 8.48 6.06 4.02 8.51 1.82 4.05 18.34 0.00 14.45 12.12 41 ER4a ExonRegion 0 95.71 115.11 106.75 150.30 110.93 196.82 163.64 108.91 88.38 127.01 315.83 322.68 203.39 253.23 187.12 188.63 214.50 68.67 73.18 117.08 82.77 106.39 73.15 42 E4a_E5a KnownJunction 0 125.58 120.31 115.05 152.23 132.60 165.93 183.94 110.41 78.76 145.14 309.97 314.65 154.54 189.36 187.65 149.88 150.16 65.37 72.76 121.31 58.19 89.83 54.97 43 ER5a ExonRegion 0 109.44 152.83 141.05 167.90 144.77 176.19 225.39 103.36 85.45 145.96 316.71 410.99 196.75 233.09 202.13 192.09 220.79 55.43 97.41 147.07 67.18 136.08 79.03 44 E5a_E6a KnownJunction 0 129.50 179.77 116.79 135.68 132.34 176.15 280.12 105.72 69.15 133.83 267.07 354.57 210.21 246.45 177.51 157.91 202.43 35.98 99.49 121.57 58.81 126.94 66.75 45 ER6a ExonRegion 0 128.79 194.45 149.99 172.86 168.15 218.96 207.93 94.16 72.91 126.45 244.91 417.27 205.19 202.23 183.46 172.47 195.25 48.23 100.16 129.33 72.05 141.46 78.18 46 E6a_E7a KnownJunction 0 213.30 139.45 169.18 196.98 224.36 243.55 271.47 98.29 88.25 129.21 240.80 531.47 199.18 246.28 219.17 182.35 233.38 39.75 99.96 106.29 54.61 162.88 72.73 47 ER7a ExonRegion 0 129.12 155.22 155.33 184.64 179.24 219.96 199.75 90.52 91.61 132.06 233.15 386.70 214.03 202.68 215.95 153.30 194.22 42.80 87.00 108.44 49.76 164.03 71.65 48 E7a_E8b KnownJunction 0 130.76 144.84 98.05 119.60 158.23 135.32 144.94 70.07 83.07 125.85 201.52 273.24 103.24 182.18 186.04 99.80 205.98 28.15 32.00 76.13 58.19 112.85 44.05 49 ER8a ExonRegion 0 5.33 4.25 4.96 9.84 6.60 3.42 7.83 4.44 6.46 5.39 3.45 14.32 13.95 2.02 2.76 1.71 11.17 2.56 1.96 8.14 6.52 4.36 0.37 50 E8_Ab KnownBoundary 0 10.37 9.14 7.42 7.92 0.00 0.00 6.62 2.22 1.71 5.91 2.53 18.61 20.94 0.00 0.00 12.05 6.92 0.00 3.76 5.75 3.15 0.00 0.00 51 ER8b ExonRegion 0 125.59 159.23 149.00 161.21 153.39 204.45 180.07 87.80 85.91 130.86 242.72 319.55 186.16 214.33 260.33 162.45 228.02 56.57 76.41 108.34 72.48 137.01 77.66 52 E8a_E9a KnownJunction 0 121.13 133.53 131.22 144.00 188.79 240.83 128.38 88.06 93.29 124.34 223.58 383.22 193.01 288.36 314.36 218.49 148.95 72.83 92.52 136.21 101.75 90.69 83.31 53 ER9a ExonRegion 0 117.26 123.44 139.61 144.61 113.25 160.65 152.51 96.00 74.61 115.11 225.10 270.70 117.64 242.77 280.64 168.46 167.40 93.87 91.94 102.29 127.60 91.45 82.56 54 E9a_E10a KnownJunction 0 160.18 139.84 155.08 161.92 160.87 231.57 303.27 122.07 85.47 112.12 214.53 334.91 176.94 304.90 461.22 174.74 202.62 104.09 87.06 109.11 143.32 124.12 101.58 55 ER10a ExonRegion 0 114.91 90.96 161.17 163.95 190.36 231.75 189.48 104.70 74.02 133.11 231.74 254.88 139.87 244.04 282.82 154.24 183.72 91.13 66.03 101.15 99.19 114.01 64.26 56 E10_Da KnownBoundary 0 6.96 10.00 23.06 19.44 17.32 14.99 17.97 10.19 13.72 13.97 2.26 12.45 0.00 4.83 4.45 4.27 8.70 11.15 4.42 3.07 6.18 7.65 4.01 57 E10a_E10b KnownJunction 0 105.80 93.80 186.30 157.92 160.78 174.33 114.47 130.41 70.20 152.28 233.01 218.47 103.40 197.60 282.96 126.98 180.55 112.30 44.52 102.08 91.74 102.93 61.72 58 ER10b ExonRegion 0 10.20 7.61 12.71 15.40 17.25 18.07 20.35 17.07 12.11 10.78 7.00 9.57 17.06 6.27 4.18 4.71 8.49 6.79 4.74 9.74 2.96 7.93 2.13 59 E10_Ab KnownBoundary 0 12.45 13.81 11.59 17.41 3.31 8.12 20.36 25.59 17.79 14.56 9.05 7.05 6.01 9.30 4.45 3.33 4.77 12.44 0.00 3.26 5.31 8.82 0.00 60 ER10c ExonRegion 0 103.73 109.26 170.15 161.75 120.29 162.50 135.32 151.50 85.92 139.04 235.12 303.29 133.25 219.88 285.93 148.48 197.94 85.47 76.28 84.55 89.21 110.54 64.35 61 E10_Db KnownBoundary 0 39.78 26.57 10.05 30.10 39.98 58.32 64.70 41.69 13.31 13.75 25.16 6.30 6.17 7.42 26.70 8.29 13.56 16.00 0.00 12.27 6.24 24.86 3.16 62 E10b_E10c KnownJunction 0 53.86 110.70 148.16 135.65 100.59 111.24 111.95 106.34 58.71 132.81 181.36 296.05 138.14 151.39 260.34 114.76 199.91 41.91 55.72 81.49 65.55 112.12 11.61 63 ER10d ExonRegion 0 42.92 31.10 18.36 32.84 42.75 43.13 46.04 36.25 17.52 14.80 19.24 29.45 29.06 13.75 23.00 16.27 20.29 10.17 8.63 10.70 6.18 25.09 12.71 64 E10_Dc KnownBoundary 0 62.97 27.69 27.76 28.87 35.91 40.89 65.23 31.87 19.33 17.70 15.37 55.97 35.71 9.12 31.15 14.01 12.90 5.51 13.18 2.49 5.81 21.43 4.35 65 ER10e ExonRegion 1 39.65 26.62 33.97 44.49 43.99 34.80 50.19 41.16 21.05 23.71 14.91 33.68 38.10 13.31 27.95 12.85 13.63 4.17 9.46 17.31 4.38 33.33 10.09 66 E10_Ac KnownBoundary 0 50.60 27.03 32.58 54.97 30.81 41.96 57.15 33.31 33.36 26.89 10.11 25.06 20.45 14.54 31.28 30.50 8.32 1.58 0.00 11.82 10.63 25.23 4.18 67 ER10f ExonRegion 0 86.14 89.86 144.99 148.79 123.30 137.43 140.56 125.70 73.03 118.35 158.03 216.30 124.61 134.42 202.97 92.74 141.08 40.15 56.90 81.20 45.65 99.35 33.76 68 E10_Dd KnownBoundary 0 175.66 135.17 148.28 197.28 314.35 255.36 305.47 130.57 84.58 139.84 136.14 284.34 142.20 189.95 335.13 84.08 141.94 36.44 88.85 73.89 34.04 106.85 53.10 69 ER10g ExonRegion 0 52.58 80.27 93.63 122.94 101.52 116.24 137.90 84.88 78.33 93.96 87.07 169.06 98.15 90.50 118.71 67.21 63.19 16.21 44.36 51.17 15.90 73.20 29.19 70 E10_De KnownBoundary 0 77.20 68.08 93.08 86.44 56.96 112.78 94.24 79.52 65.25 90.55 86.39 188.91 97.88 37.85 54.14 58.62 51.52 10.78 25.60 60.08 11.49 50.70 28.26 71 ER10h ExonRegion 1 69.59 48.84 63.55 105.18 64.64 83.81 88.68 67.50 56.34 65.47 58.46 157.84 91.09 39.46 63.01 44.43 27.68 15.30 24.42 47.11 6.73 49.60 21.74 72 E10_Df KnownBoundary 0 77.94 54.60 41.87 144.47 86.16 82.62 81.57 58.08 57.90 61.59 34.38 101.73 32.79 23.84 52.91 53.92 18.23 15.75 29.37 19.49 6.05 39.01 15.11 73 ER10i ExonRegion 0 49.96 61.67 66.60 110.22 69.72 79.22 69.48 64.57 47.27 65.19 40.56 107.94 40.73 46.95 49.13 33.22 26.36 18.33 24.24 43.32 13.61 48.42 17.98 74 IG44_AR1 ActiveIntergenicRegion 0 9.83 28.03 35.77 28.95 30.13 19.82 30.64 11.61 18.61 20.64 11.83 66.80 19.88 19.95 22.86 9.62 4.01 8.01 9.18 23.15 8.08 8.78 5.45 75 IG44_SR1 SilentIntergenicRegion 0 22.79 31.78 40.98 49.66 42.68 34.80 39.77 28.98 26.59 26.89 11.30 43.44 28.50 16.01 16.61 15.82 10.44 10.75 18.54 23.05 10.97 16.73 7.08 76 IG44_AR2 ActiveIntergenicRegion 0 14.11 24.64 35.05 33.10 26.98 35.03 25.64 30.57 24.33 23.63 9.59 25.66 10.05 12.12 16.71 13.39 7.07 14.47 18.79 19.27 13.89 14.73 11.35