Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EEF1B2 Gene 0 688.25 1513.74 2649.77 1582.95 417.02 527.39 458.87 445.27 197.44 625.17 957.72 421.52 204.70 634.02 886.76 584.21 653.34 443.65 679.83 531.39 557.07 471.26 330.97 2 236957 Transcript 0 4.66 0.00 0.00 0.00 0.00 0.00 7.94 0.00 1.24 1.15 0.00 0.00 0.00 2.76 3.19 0.00 0.00 3.70 0.00 4.26 0.00 0.00 0.00 3 392221 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 392222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 445505 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 479587 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 429769 Transcript 0 42.23 70.38 68.24 67.66 32.85 10.05 25.66 4.19 7.18 10.42 14.21 18.76 0.00 12.24 31.15 14.36 4.68 6.22 7.72 14.45 8.71 8.33 15.71 8 460760 Transcript 1 90.94 40.11 44.45 26.32 60.62 54.51 51.25 14.87 9.33 14.49 71.45 65.39 57.09 77.62 32.56 27.57 32.61 18.80 20.65 32.94 17.52 27.19 24.00 9 415904 Transcript 0 74.73 89.13 138.96 76.71 46.52 57.24 43.84 24.07 12.33 32.44 58.02 51.62 16.14 44.85 61.26 36.98 35.29 31.94 34.49 39.24 31.78 38.26 19.65 10 435123 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 455150 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 482103 Transcript 0 61.61 20.44 68.05 36.24 27.75 29.50 29.55 26.49 11.29 32.84 41.09 42.47 16.16 36.24 40.68 18.45 19.58 12.06 22.98 18.52 13.46 24.41 13.73 13 ER1a ExonRegion 0 4.66 0.00 0.00 0.00 0.00 0.00 7.94 0.00 1.24 1.15 0.00 0.00 0.00 2.76 3.19 0.00 0.00 3.70 0.00 4.26 0.00 0.00 0.00 14 ER1b ExonRegion 0 13.66 6.84 5.46 1.24 3.16 11.67 14.56 1.73 1.80 4.27 8.79 0.00 0.00 12.40 33.50 13.78 6.30 12.43 3.76 16.25 4.01 4.36 12.28 15 E1_Af KnownBoundary 0 27.19 24.73 2.63 3.73 12.14 42.19 31.66 0.00 1.50 4.67 38.90 0.00 0.00 36.32 35.35 56.91 31.79 47.26 27.86 35.79 21.07 14.51 23.65 16 ER1c ExonRegion 0 23.28 19.32 12.87 4.09 8.03 31.17 29.79 3.46 3.09 10.32 25.13 0.00 0.00 43.04 66.73 46.07 19.81 26.79 20.70 40.43 17.63 11.46 20.56 17 E1_Ag KnownBoundary 1 145.58 240.09 146.92 45.25 107.81 296.02 285.11 27.52 16.03 86.01 65.86 5.85 0.00 126.26 157.24 298.30 94.62 168.47 287.44 147.46 73.02 86.83 121.73 18 ER1d ExonRegion 0 26.46 38.64 24.97 7.50 12.71 58.91 55.11 4.75 3.71 20.36 44.46 0.00 4.69 82.22 99.37 80.62 39.61 36.95 33.05 62.23 28.10 14.85 32.67 19 ER1e ExonRegion 1 91.51 160.46 101.47 34.14 63.71 223.72 198.66 24.20 15.70 72.69 88.08 1.44 9.38 175.71 266.78 261.55 96.20 94.76 170.95 154.20 69.47 62.80 100.13 20 ER1f ExonRegion 1 172.50 309.10 169.10 71.55 131.11 441.95 404.47 45.80 28.41 130.17 136.27 4.33 9.38 289.09 406.18 381.92 161.74 135.81 291.46 245.74 122.31 106.26 160.05 21 ER1g ExonRegion 1 278.55 521.30 259.33 128.32 309.46 985.95 739.20 82.74 70.91 239.05 259.51 5.08 6.12 289.23 386.12 389.28 243.76 244.87 386.81 342.97 213.95 170.03 238.12 22 E1_Da KnownBoundary 0 216.71 467.48 132.34 121.33 552.46 1223.56 623.80 96.20 84.72 213.90 175.47 0.00 11.69 123.49 118.43 96.04 108.37 182.60 252.81 245.31 211.34 154.61 201.37 23 E1a_E1h KnownJunction 1 31.04 46.90 46.95 14.68 4.33 79.90 102.68 11.13 13.77 41.96 24.64 0.00 0.00 40.14 43.39 52.64 13.00 30.72 31.25 51.84 5.56 2.63 21.26 24 E1a_E1k KnownJunction 1 115.72 189.11 174.59 73.32 84.38 382.39 367.57 48.47 29.20 103.53 151.67 6.30 0.00 99.77 184.68 90.66 155.68 158.93 81.41 105.08 89.21 68.28 80.92 25 ER1h ExonRegion 0 67.07 163.17 183.16 127.31 120.95 267.16 127.38 97.82 98.74 210.77 141.22 15.77 14.44 116.96 123.23 106.11 83.23 180.83 182.41 160.58 138.98 91.99 116.30 26 E1_Ah KnownBoundary 0 56.68 95.97 170.07 111.17 96.77 249.29 134.65 73.28 72.45 130.28 101.24 17.71 37.34 144.86 95.43 128.68 45.91 204.66 159.35 88.65 56.40 88.11 133.34 27 E1_Ai KnownBoundary 0 15.11 76.04 293.04 130.82 129.37 138.33 82.32 37.58 26.97 73.68 21.37 0.00 6.98 0.00 12.61 34.78 9.54 68.11 28.80 61.55 37.68 43.48 30.30 28 E1_Aj KnownBoundary 1 4975.40 9892.84 1244.99 823.60 1715.37 3125.81 1763.51 274.62 79.74 264.35 3231.92 0.00 41.39 1637.54 1709.38 3349.55 2458.72 742.26 4114.00 1318.74 2078.13 2027.32 2177.78 29 ER1i ExonRegion 1 2809.98 6517.77 2396.65 1256.48 1277.48 2783.18 1530.03 397.54 183.41 704.85 2419.71 41.13 51.59 2550.22 3154.08 2421.43 1839.31 1248.68 3120.29 1147.72 1773.04 1462.04 1615.57 30 E1_Ak KnownBoundary 1 2090.22 3878.98 4692.68 2326.98 1320.12 2318.89 1690.90 625.02 261.95 1042.27 1544.50 106.53 133.27 1213.67 1039.00 911.21 1130.99 1715.71 918.90 725.59 959.65 718.76 568.26 31 ER1j ExonRegion 1 3840.27 8672.34 3290.47 1644.03 1857.35 3825.57 2205.72 482.49 215.97 834.29 3356.06 42.06 60.30 3296.50 4058.85 3008.22 2495.48 1553.17 3807.42 1475.98 2352.62 2016.85 1962.94 32 ER1k ExonRegion 1 4068.96 9139.47 3556.37 1754.14 1932.53 3962.33 2373.33 514.32 225.53 897.98 3602.85 40.18 76.35 3213.03 3244.65 3125.01 2672.54 1624.10 3885.38 1553.70 2482.96 2112.27 2002.67 33 ER1l ExonRegion 1 1352.38 2620.32 3193.82 1418.56 711.16 1334.23 1029.14 443.74 230.02 806.29 1355.91 176.26 163.75 890.51 1055.86 915.41 897.17 1148.55 885.86 762.35 802.52 542.07 473.99 34 E1_Db KnownBoundary 0 629.07 1029.36 2285.14 864.76 345.50 500.05 411.99 317.58 200.75 581.53 564.93 357.42 406.14 459.95 734.78 332.90 509.58 477.05 402.65 457.58 582.75 229.87 148.96 35 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER1m ExonRegion 1 288.67 512.02 2997.29 1126.51 108.79 195.32 155.48 427.69 231.69 867.17 1374.53 122.49 152.71 456.58 584.78 228.85 1107.17 408.62 363.05 531.03 1258.10 270.86 117.97 37 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E1c_E2b KnownJunction 1 446.30 456.69 4540.91 1904.42 94.31 120.21 67.26 662.69 315.94 1257.76 2846.88 100.38 74.18 490.79 618.09 287.02 2063.95 746.29 539.12 849.40 2253.39 339.60 181.23 39 ER2a ExonRegion 0 13.69 12.33 147.73 67.55 11.79 4.13 4.55 22.36 10.15 37.56 102.62 16.78 11.87 25.33 26.47 26.01 88.30 14.61 40.51 31.78 74.31 17.38 11.01 40 ER2b ExonRegion 1 899.52 1521.10 6467.38 3803.88 421.63 525.11 470.72 945.85 421.54 1381.18 2038.97 259.38 181.60 1838.78 2474.10 1597.88 1554.10 934.14 1795.14 1503.27 1335.00 1192.11 928.65 41 E2_Da KnownBoundary 0 151.14 26.90 80.81 37.09 27.59 54.68 54.94 15.28 30.44 32.29 57.65 49.67 13.64 49.56 54.52 102.28 33.29 27.61 48.10 17.00 21.87 95.89 47.46 42 E2a_E2c KnownJunction 0 42.90 43.54 73.21 32.83 52.29 39.92 23.32 1.56 6.71 9.75 11.32 0.00 6.17 19.78 10.38 4.10 8.32 4.31 8.56 7.93 3.03 2.33 4.10 43 E2a_E3b KnownJunction 0 3882.61 4473.48 6687.91 3825.32 2332.51 1849.05 2047.38 1114.54 477.19 1499.27 2067.37 477.01 335.85 973.87 1380.43 1300.68 1188.03 1353.95 1438.44 1423.12 1246.54 1123.39 565.10 44 ER2c ExonRegion 0 97.77 32.90 89.29 45.28 51.40 64.34 49.95 34.69 19.00 41.69 152.32 47.94 27.85 79.53 74.71 87.03 102.10 40.92 34.00 31.88 36.04 58.72 48.50 45 E2_Ac KnownBoundary 0 284.72 39.27 128.77 55.40 108.74 76.49 37.98 47.44 25.72 58.34 288.70 50.57 47.89 95.89 85.30 229.09 176.16 49.95 59.39 35.67 66.04 154.86 69.31 46 ER2d ExonRegion 0 117.44 75.11 162.76 84.78 73.73 72.81 57.79 42.72 23.32 47.47 115.34 79.04 45.70 122.13 97.31 87.78 65.95 40.55 44.64 42.25 48.04 69.44 45.34 47 E2_Db KnownBoundary 0 153.81 77.68 125.10 93.16 51.53 47.25 68.19 39.64 23.35 33.09 49.38 96.48 27.27 83.47 79.98 14.87 36.56 26.70 44.99 28.57 19.34 29.88 25.78 48 E2_Dc KnownBoundary 0 102.39 55.25 81.13 43.22 95.33 97.67 56.44 25.59 14.90 25.25 95.02 53.27 54.38 32.79 48.09 27.17 21.41 11.86 23.15 23.78 21.25 28.41 17.33 49 E2c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E2c_E3b KnownJunction 0 42.23 70.38 68.24 67.66 32.85 10.05 25.66 4.19 7.18 10.42 14.21 18.76 0.00 12.24 31.15 14.36 4.68 6.22 7.72 14.45 8.71 8.33 15.71 51 ER2e ExonRegion 0 164.10 116.05 159.79 115.39 113.45 96.95 87.38 45.40 27.42 46.64 118.68 103.33 64.72 103.08 105.61 35.86 46.43 40.40 51.18 48.37 36.43 50.14 42.48 52 ER2f ExonRegion 0 90.94 40.11 44.45 26.32 60.62 54.51 51.25 14.87 9.33 14.49 71.45 65.39 57.09 77.62 32.56 27.57 32.61 18.80 20.65 32.94 17.52 27.19 24.00 53 I2 Intron 0 79.71 31.11 38.68 31.07 41.99 23.74 25.97 19.20 15.16 21.46 47.03 87.62 78.25 73.88 64.88 30.32 33.67 5.77 26.24 20.87 6.92 25.34 16.13 54 I2_AR1 ActiveIntronRegion 0 80.96 31.58 39.29 31.54 42.62 24.11 26.38 19.50 15.38 21.78 47.72 88.99 79.29 74.90 65.87 30.79 34.17 5.86 26.63 21.19 7.01 25.73 16.36 55 E3_Ab NovelBoundary 1 149.21 82.35 76.76 69.92 80.56 152.01 76.62 31.50 30.67 26.11 58.70 182.46 74.83 124.61 147.48 59.47 57.50 19.11 48.28 59.57 19.89 83.03 36.28 56 ER3a ExonRegion 0 149.46 178.25 277.92 153.43 93.03 114.47 87.69 48.13 24.65 64.89 116.05 103.24 32.29 89.70 122.52 73.96 70.59 63.89 68.98 78.48 63.57 76.53 39.31 57 ER3b ExonRegion 0 1983.14 5436.34 7887.07 4643.02 1641.25 2287.48 1952.35 1308.34 570.51 1720.75 2780.17 1216.62 627.64 1704.71 2571.50 1651.76 1658.52 1229.10 1732.22 1628.54 1617.22 1526.76 796.21 58 E3_Da NovelBoundary 1 1156.58 6387.09 5990.71 4584.73 435.57 985.23 1043.08 967.70 370.25 941.51 461.91 1368.15 657.59 2009.43 2717.23 1795.85 270.41 883.58 1501.78 1001.26 233.83 1571.31 773.13 59 E3c_E4a KnownJunction 0 2943.86 8967.22 10505.07 7363.53 742.02 1019.64 1092.01 1776.37 747.53 2224.30 2268.21 1194.39 642.33 2284.14 3153.60 2153.71 1424.50 1552.68 2634.90 1981.18 1354.59 2090.63 999.18 60 ER3c ExonRegion 1 1983.34 7954.27 9095.83 6489.32 577.76 1141.47 1114.78 1487.67 595.23 1735.35 1405.51 1481.01 596.36 2719.53 3430.84 2247.61 877.78 1397.47 2287.09 1650.73 893.35 2101.47 972.93 61 ER3d ExonRegion 0 2095.78 7967.56 9988.73 7105.81 581.17 1011.16 960.40 1664.16 666.71 2045.16 2103.77 1168.96 425.85 2495.62 3021.36 2093.57 1402.88 1435.33 2387.75 1833.19 1291.37 1997.26 964.39 62 ER4a ExonRegion 1 1878.36 6718.89 11475.17 7401.93 563.65 769.78 865.54 2010.49 784.39 2624.49 4268.81 818.59 489.17 1169.33 1530.85 1228.23 2970.39 1488.92 1712.05 2168.34 2432.90 1171.35 640.11 63 E4_Da NovelBoundary 1 1832.77 6081.55 12943.39 7894.90 737.86 764.73 1085.74 2203.70 855.37 2908.59 5740.61 1090.26 986.30 786.16 1008.96 829.53 4015.52 1292.97 1131.61 2504.21 3047.91 830.69 445.60 64 E4b_E5b KnownJunction 0 1602.88 2981.90 9855.18 5899.08 1158.91 893.92 1483.96 1818.06 656.36 2231.05 2696.84 803.96 310.86 1782.75 2241.43 1427.49 1912.39 1194.85 2185.19 1614.04 1582.49 1994.01 670.36 65 ER4b ExonRegion 1 1307.54 3885.72 10643.57 6401.67 758.52 769.86 1074.57 1865.32 712.11 2484.58 4049.57 939.81 524.41 1175.08 1268.81 1027.81 2869.21 1245.59 1479.66 1869.34 2311.28 1358.61 513.26 66 ER5a ExonRegion 0 61.61 20.44 68.05 36.24 27.75 29.50 29.55 26.49 11.29 32.84 41.09 42.47 16.16 36.24 40.68 18.45 19.58 12.06 22.98 18.52 13.46 24.41 13.73 67 E5_Ab KnownBoundary 0 51.27 30.92 58.19 31.70 39.13 17.66 35.77 34.34 17.88 27.83 50.28 43.06 12.99 43.50 46.97 26.75 24.03 6.01 21.46 20.39 29.22 27.07 20.23 68 ER5b ExonRegion 0 1173.21 2301.02 9605.32 6350.16 1287.42 957.13 1056.84 1647.56 655.17 2117.30 2463.92 2261.99 955.42 1802.68 3066.30 1982.27 1588.15 1454.33 2270.60 1472.69 1328.18 1653.60 1064.57 69 E5a_E6a KnownJunction 1 921.57 3094.71 8843.27 5559.50 452.21 492.27 937.04 1367.93 500.46 1757.60 1355.76 721.59 149.02 1301.91 1790.35 710.16 1044.97 869.11 1387.05 598.46 569.83 807.61 448.24 70 ER6a ExonRegion 1 871.31 3068.73 4362.12 2158.81 379.99 447.22 544.44 730.47 318.83 1091.87 1504.91 584.66 281.02 371.92 492.18 261.38 1037.97 374.81 361.82 448.79 714.30 156.01 127.48 71 E6_Da KnownBoundary 1 1644.96 4328.77 2880.65 1134.42 766.64 776.20 887.98 522.22 258.30 766.18 1721.23 646.11 572.53 139.09 238.71 256.86 870.78 200.63 179.11 513.89 823.31 61.23 104.31 72 ER6b ExonRegion 1 858.02 2500.77 3727.29 1884.51 318.48 375.64 418.06 562.52 254.66 825.23 1150.84 313.43 186.24 200.32 294.94 171.37 568.10 283.09 171.00 390.14 470.38 183.79 86.48 73 E6_Db KnownBoundary 0 715.98 1855.79 4341.66 2791.62 164.52 196.70 265.95 575.61 245.86 717.08 516.29 387.43 114.44 330.63 577.17 279.93 294.81 411.51 290.74 385.23 154.32 413.02 136.41 74 ER6c ExonRegion 1 2744.09 3898.21 2916.95 1917.56 1193.20 601.17 806.55 432.94 179.61 549.72 1219.44 1772.72 720.61 1167.63 2107.13 730.84 963.15 363.02 1168.74 497.89 487.45 539.28 525.23 75 ER6d ExonRegion 0 46.56 142.35 51.47 53.15 37.46 18.34 41.04 8.64 6.18 8.03 77.32 73.60 32.83 43.85 75.43 29.72 66.02 18.48 31.85 36.17 15.43 37.50 17.62