Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC009336.4 Gene 0 3.93 5.73 14.14 8.41 7.16 12.83 13.09 12.87 6.31 10.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.49 15.69 23.01 1.02 1.71 1.89 2 426965 Transcript 0 2.02 6.40 24.24 11.11 8.74 12.07 24.38 16.04 7.51 15.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.67 20.81 11.56 1.05 0.77 1.89 3 440016 Transcript 0 1.37 0.62 0.02 0.69 1.71 0.05 0.00 2.69 1.30 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 6.23 6.77 0.71 0.01 0.00 4 417215 Transcript 0 5.73 2.04 3.20 2.57 0.65 0.18 0.07 1.03 0.46 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.16 30.06 1.10 1.74 3.31 5 ER1a ExonRegion 0 0.20 2.22 12.52 0.81 3.55 12.67 18.26 11.88 6.22 10.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.82 22.74 21.82 0.00 0.15 1.74 6 E1_Ab KnownBoundary 0 0.00 3.35 8.10 1.90 11.46 25.33 12.94 15.44 5.38 6.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.01 21.27 24.93 0.00 0.00 0.00 7 ER1b ExonRegion 0 0.78 1.39 12.55 4.07 3.02 16.90 9.81 10.94 3.56 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 15.59 8.37 0.27 0.70 0.22 8 E1_Da NovelBoundary 0 11.19 6.05 15.55 11.42 4.33 7.67 22.26 13.10 6.13 15.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.87 14.40 15.08 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 7.56 14.47 55.05 31.66 27.93 52.02 33.30 43.54 24.94 35.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.10 94.87 12.27 3.03 5.45 4.27 10 I1 Intron 0 2.66 3.38 3.95 3.17 4.18 6.83 17.66 12.32 5.28 3.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.46 10.42 10.07 0.22 0.00 0.00 11 I1_AR1 ActiveIntronRegion 0 4.96 7.70 5.27 5.49 8.68 6.94 32.21 15.78 6.30 9.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 23.54 19.16 0.79 0.00 0.00 12 E2_Aa NovelBoundary 0 0.00 3.35 4.76 2.06 4.33 2.38 16.61 4.03 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 3.95 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 5.88 14.88 42.79 24.95 27.32 44.77 37.81 45.95 26.78 34.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.02 83.03 16.43 0.76 3.35 0.62 14 E2_Da NovelBoundary 0 3.56 0.00 4.26 7.69 11.38 29.24 24.82 30.07 10.73 8.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.87 25.22 2.88 0.00 2.94 11.52 15 E2a_E3a KnownJunction 0 3.56 3.16 38.67 16.08 8.32 6.81 27.95 15.98 5.53 17.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.96 26.45 6.33 3.03 0.00 3.93 16 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 1.24 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3_Aa NovelBoundary 0 8.82 8.81 6.24 6.33 11.29 13.34 28.26 9.94 3.12 11.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.56 24.85 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 2.29 13.83 21.53 16.45 14.36 16.72 26.92 20.25 10.78 18.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.22 13.23 6.52 0.11 2.16 0.00 19 E3_Da NovelBoundary 0 9.56 34.14 14.43 8.76 8.57 5.11 31.75 24.73 10.16 16.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.69 2.43 0.00 2.76 0.00 20 I3 Intron 0 3.59 8.93 9.63 8.52 17.81 17.78 18.65 18.02 9.56 11.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.24 13.13 6.93 0.12 0.62 0.08 21 I3_SR1 SilentIntronRegion 0 3.93 13.05 7.59 4.31 13.35 16.57 23.38 11.14 11.59 11.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.03 14.62 7.14 0.46 0.00 0.00 22 I3_AR1 ActiveIntronRegion 0 3.97 11.87 15.73 11.36 23.69 20.94 15.14 15.93 12.95 17.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.54 13.40 6.10 0.28 0.52 0.00 23 I3_SR2 SilentIntronRegion 0 3.74 7.48 8.55 9.22 15.78 17.45 18.99 21.45 8.97 10.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.54 13.62 7.67 0.00 0.77 0.14 24 I3_SR3 SilentIntronRegion 0 0.79 4.54 4.02 2.27 24.90 13.63 18.21 9.53 0.69 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 5.93 3.14 0.00 0.78 0.00 25 Ix Intron 0 6.37 13.81 18.12 16.97 50.37 44.01 32.01 58.01 16.54 33.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.79 22.12 16.81 0.00 0.66 0.47 26 Ix_AR1 ActiveIntronRegion 0 8.33 19.37 22.49 17.11 58.84 47.76 37.51 66.42 18.71 38.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.19 21.61 16.99 0.00 0.53 0.75 27 Ix_SR1 SilentIntronRegion 0 3.21 4.78 11.14 17.02 37.08 38.48 23.36 44.95 13.21 26.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.54 23.33 16.79 0.00 0.89 0.00 28 Ix Intron 0 10.73 11.52 43.61 21.20 35.11 22.42 10.27 46.11 13.17 28.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.17 25.65 15.86 0.00 1.86 0.00 29 Ix_SR1 SilentIntronRegion 0 10.86 11.65 44.13 21.45 35.53 22.68 10.39 46.66 13.33 28.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 25.94 16.05 0.00 1.89 0.00 30 I3 Intron 0 4.20 16.52 9.85 8.02 7.45 2.42 1.13 11.50 3.62 5.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.58 17.74 0.08 0.71 0.10 31 I3_SR1 SilentIntronRegion 0 4.45 17.68 10.30 8.47 7.90 2.51 1.16 11.84 3.90 5.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 3.66 17.94 0.08 0.76 0.11 32 Ix Intron 0 5.10 5.66 18.63 17.33 3.47 1.02 0.25 15.77 2.39 5.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 38.40 28.41 0.82 3.48 8.17 33 Ix_SR1 SilentIntronRegion 0 5.14 5.70 18.76 17.45 3.50 1.03 0.25 15.89 2.41 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 38.68 28.62 0.82 3.50 8.22 34 I3 Intron 0 1.66 3.72 1.43 0.53 3.50 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 29.49 1.15 0.00 1.54 35 I3_AR1 ActiveIntronRegion 0 1.68 3.75 1.45 0.54 3.54 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 29.78 1.16 0.00 1.55 36 E4_Aa NovelBoundary 0 7.48 5.92 16.59 7.56 0.00 0.00 0.00 13.80 2.46 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 9.13 113.84 6.30 5.57 14.85 37 ER4a ExonRegion 0 2.73 1.24 0.03 1.38 3.42 0.09 0.00 3.24 1.36 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 12.46 13.55 1.42 0.03 0.00 38 E4_Ab NovelBoundary 0 3.78 0.00 6.42 10.75 4.33 0.00 0.00 1.81 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 28.51 0.00 0.00 4.35 39 E4_Da NovelBoundary 0 0.00 3.16 4.94 8.42 8.40 0.00 0.00 2.26 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 4.24 32.92 0.00 0.00 3.59 40 ER4b ExonRegion 0 2.12 1.02 0.00 0.00 2.68 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 41 ER4c ExonRegion 0 8.88 2.15 6.04 5.22 1.95 0.55 0.20 3.09 1.38 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.48 59.82 3.31 2.50 6.20 42 E4_Db NovelBoundary 0 0.00 0.00 7.18 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.24 5.07 2.82 7.09 43 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 I4 Intron 0 6.91 5.59 10.03 4.19 0.00 0.00 0.68 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 63.21 3.41 6.08 5.55 45 I4_AR1 ActiveIntronRegion 0 6.72 5.23 8.63 4.89 0.00 0.00 0.18 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.19 47.38 2.46 8.46 8.17 46 I4_SR1 SilentIntronRegion 0 7.11 5.89 11.10 3.76 0.00 0.00 1.03 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 74.61 4.08 4.55 3.84 47 E5_Aa NovelBoundary 0 28.52 17.56 20.28 6.49 0.00 0.00 0.00 0.00 1.10 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 152.00 5.13 8.45 25.78 48 ER5a ExonRegion 0 8.30 3.96 3.56 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.37 0.00 2.73 3.74 49 IG15 Intergenic 0 14.24 15.23 19.76 4.97 0.49 0.34 0.69 1.58 1.91 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.39 159.45 7.54 9.81 12.48 50 IG15_SR3 SilentIntergenicRegion 0 13.11 14.39 18.24 8.86 0.43 1.06 0.82 4.54 3.06 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 127.91 7.64 8.49 10.08 51 IG15_AR6 ActiveIntergenicRegion 0 14.82 9.88 30.81 14.99 0.00 1.83 1.32 0.00 4.94 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 130.70 6.61 10.42 19.30 52 IG15_AR5 ActiveIntergenicRegion 0 11.20 18.47 35.13 12.10 0.00 0.84 0.00 0.00 3.71 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 104.61 3.76 11.37 15.05 53 IG15_AR4 ActiveIntergenicRegion 0 19.30 28.35 37.34 4.81 0.00 0.00 0.00 0.00 2.25 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 131.04 1.94 13.60 15.55 54 IG15_AR3 ActiveIntergenicRegion 0 19.27 15.87 31.86 4.97 1.94 0.38 0.50 0.86 1.04 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 158.41 9.30 10.92 16.30 55 IG15_AR2 ActiveIntergenicRegion 0 5.82 18.11 28.40 3.64 1.23 0.00 2.72 0.93 0.69 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 199.84 9.32 10.86 18.86 56 IG15_SR2 SilentIntergenicRegion 0 15.71 18.78 21.31 3.70 0.00 0.00 0.81 0.71 2.19 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 150.12 8.44 7.56 12.46 57 IG15_AR1 ActiveIntergenicRegion 0 19.43 11.28 20.16 5.08 0.00 0.00 0.00 3.93 1.24 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 252.61 5.61 12.88 8.54 58 IG15_SR1 SilentIntergenicRegion 0 12.23 12.24 11.96 3.38 0.24 0.17 0.48 1.00 1.45 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.16 182.91 6.32 11.37 11.39