Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010127.3 Gene 0 1.96 7.68 2.91 4.08 1.83 1.99 11.01 6.77 6.26 3.81 0.73 2.57 2.50 1.51 3.05 2.83 1.31 4.22 2.60 6.06 1.31 0.74 1.95 2 447809 Transcript 0 0.38 1.82 0.72 1.11 0.63 0.35 2.93 2.55 2.37 1.20 0.09 0.54 0.70 0.32 0.80 0.38 0.21 0.86 0.47 1.70 0.19 0.14 0.28 3 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.89 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER2a ExonRegion 0 1.94 3.74 0.00 4.67 0.00 0.00 3.04 0.00 0.85 1.07 0.00 6.32 10.65 3.69 11.45 1.34 1.52 0.00 4.39 3.91 1.01 0.00 1.35 6 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E4_Aa NovelBoundary 0 9.78 179.90 51.15 58.77 93.29 473.76 213.75 168.57 377.51 133.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 342.16 16.09 245.83 3.09 5.63 3.50 10 ER4a ExonRegion 0 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.59 0.00 11 E4_Da NovelBoundary 0 40.90 487.28 105.50 250.35 282.34 1330.03 463.22 398.25 870.13 274.56 2.05 0.00 0.00 2.47 0.00 0.00 0.00 617.20 60.52 696.31 38.61 5.88 8.62 12 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 Ix Intron 0 2.09 19.16 3.10 12.99 21.43 42.60 47.66 37.57 43.49 21.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.58 38.31 0.08 1.17 0.90 14 Ix_SR1 SilentIntronRegion 0 2.09 19.17 3.10 13.00 21.44 42.62 47.68 37.59 43.51 21.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.01 0.58 38.33 0.08 1.17 0.90 15 ER5a ExonRegion 0 0.00 1.19 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 16 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E6_Aa NovelBoundary 0 0.00 0.00 1.63 0.00 0.00 2.90 21.95 1.68 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.07 0.00 0.00 0.00 0.00 0.00 18 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E7_Aa NovelBoundary 0 0.00 47.82 6.80 10.45 36.25 115.39 53.75 32.98 99.07 29.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 164.61 4.05 180.76 2.66 2.69 0.00 21 ER7a ExonRegion 0 0.00 0.77 2.08 0.73 0.00 1.40 1.51 1.96 4.85 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 4.05 0.00 0.79 0.00 22 E7_Da NovelBoundary 0 3.78 19.47 1.83 0.00 0.00 11.02 3.93 11.42 14.12 6.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 0.00 17.96 0.00 0.00 0.00 23 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 Ix_AR2 ActiveIntronRegion 0 1.98 17.35 7.25 19.07 8.60 2.32 17.38 16.94 11.16 3.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.56 1.01 11.51 0.00 0.00 0.45 25 Ix_SR3 SilentIntronRegion 0 1.21 10.33 3.60 16.86 5.72 2.77 11.40 10.34 9.62 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.79 0.18 10.45 0.14 0.56 0.56 26 Ix Intron 0 2.23 20.67 6.96 18.97 10.53 12.74 37.48 14.47 10.67 5.72 0.00 0.00 0.00 0.00 0.11 0.00 0.00 10.97 0.80 18.12 0.04 0.86 0.26 27 Ix_SR1 SilentIntronRegion 0 2.30 21.20 7.17 19.51 10.82 13.12 38.32 14.88 10.97 5.89 0.00 0.00 0.00 0.00 0.11 0.00 0.00 11.30 0.82 18.55 0.04 0.88 0.25 28 E8_Aa NovelBoundary 0 10.08 176.28 75.54 178.33 46.43 468.99 118.93 161.09 448.32 121.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 467.14 45.84 462.25 48.74 3.12 8.19 29 ER8a ExonRegion 0 0.00 0.00 1.16 0.03 0.00 0.00 0.00 0.09 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 30 E8_Da NovelBoundary 0 5.78 121.16 47.10 101.92 36.08 268.03 122.07 145.48 334.37 131.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 388.17 16.19 351.10 11.86 0.00 0.00 31 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER9a ExonRegion 0 0.00 5.71 1.19 2.38 0.00 1.69 9.94 10.50 5.79 3.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 4.05 0.00 0.00 0.00 33 E9a_E10a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 Ix_AR1 ActiveIntronRegion 0 1.07 8.73 4.46 9.05 2.57 5.86 18.14 34.15 17.01 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 1.38 12.96 0.00 0.00 0.00 35 E10_Aa NovelBoundary 0 0.00 3.35 5.91 2.00 6.45 13.23 20.71 35.69 24.57 12.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 15.47 0.00 0.00 0.00 36 ER10a ExonRegion 0 0.00 6.80 5.15 6.06 5.10 0.05 11.36 25.62 19.20 6.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.64 0.00 9.05 0.00 0.00 0.00 37 E10_Da NovelBoundary 0 3.19 13.02 10.88 7.13 0.00 2.44 22.39 48.43 29.17 13.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 15.02 0.00 0.00 0.00 38 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E11_Aa NovelBoundary 0 3.78 12.37 5.29 11.82 0.00 7.78 28.57 53.31 14.03 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 8.56 0.00 0.00 0.00 40 ER11a ExonRegion 0 2.13 6.82 0.61 1.36 6.30 0.00 12.87 8.64 13.59 4.01 0.00 0.00 0.00 0.00 0.15 0.02 0.04 3.44 0.00 5.67 0.00 0.03 0.00 41 E11_Da NovelBoundary 0 0.00 5.79 3.67 9.39 3.23 5.79 16.69 28.01 23.21 10.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.69 0.00 0.00 0.00 42 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E12_Aa NovelBoundary 0 56.38 144.51 86.04 121.03 141.26 88.53 194.54 138.91 99.16 101.83 43.91 61.67 64.61 56.86 51.18 72.97 101.73 72.09 89.04 146.18 69.87 55.72 123.52 44 ER12a ExonRegion 0 4.66 16.82 6.30 8.82 3.18 4.80 22.79 11.04 10.08 7.63 1.96 6.10 5.35 3.58 6.71 7.44 3.33 9.83 6.45 12.29 3.41 1.73 5.07