Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LYPD6 Gene 0 5.59 17.08 16.62 10.90 27.04 60.40 64.76 14.59 10.50 19.33 0.00 0.00 0.08 0.00 0.04 0.00 0.00 17.21 6.36 7.63 9.00 17.06 39.05 2 409381 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 3 334166 Transcript 0 4.21 5.11 7.06 3.89 11.92 20.51 22.26 3.99 2.73 5.28 0.00 0.00 0.00 0.00 0.20 0.00 0.00 3.20 2.29 2.00 3.77 5.70 11.01 4 418762 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 414420 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 6 392854 Transcript 0 0.00 1.06 1.07 0.58 0.00 0.32 3.63 0.97 0.77 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.55 0.35 0.38 0.00 0.00 7 435850 Transcript 0 0.00 0.23 0.07 0.10 0.29 0.00 1.19 0.33 0.01 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.45 0.37 0.59 0.02 1.01 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 9 E1a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 2.55 2.45 0.73 0.82 5.37 23.42 11.50 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 3.84 0.50 5.50 0.84 6.73 11 E2_Ab KnownBoundary 0 0.00 0.00 1.48 0.00 0.00 24.53 16.61 0.00 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 3.20 5.93 0.00 16.56 12 ER2b ExonRegion 0 0.00 0.00 1.60 0.00 0.00 8.24 3.75 0.94 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 0.00 2.38 1.49 1.45 4.58 13 E2a_E6b KnownJunction 0 0.00 0.00 4.73 0.00 0.00 0.00 1.81 2.55 0.00 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.40 0.00 0.00 0.00 2.51 3.50 14 I2_SR2 SilentIntronRegion 0 3.59 6.72 5.42 2.94 11.06 6.71 19.44 7.09 0.66 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 0.38 2.01 1.20 0.25 4.15 15 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 16 ER3b ExonRegion 0 0.75 0.00 0.65 0.00 0.00 0.00 10.05 1.12 0.03 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.68 0.00 0.00 2.08 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E4_Aa NovelBoundary 0 2.89 0.00 2.84 1.96 0.00 5.28 38.24 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4a ExonRegion 0 0.00 0.98 2.09 1.66 4.28 2.63 16.84 2.91 0.51 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 1.34 0.25 0.63 0.00 0.00 20 E4_Da KnownBoundary 0 0.00 3.09 0.00 1.40 4.33 0.00 6.01 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.80 3.26 0.00 0.00 0.00 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 22 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4b ExonRegion 0 0.00 0.51 0.00 0.23 0.88 0.00 3.45 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 1.34 1.00 1.76 0.00 0.00 24 E4_Db NovelBoundary 0 0.00 3.16 3.67 3.73 0.00 8.52 33.92 2.38 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 2.94 0.00 0.00 0.00 25 E4b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER5a ExonRegion 0 0.00 3.17 1.59 0.21 0.00 0.95 9.02 0.49 0.53 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 1.66 1.04 1.15 0.00 0.00 27 E5a_E6b KnownJunction 0 0.00 0.00 1.63 1.53 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 0.00 0.17 0.20 0.08 0.00 0.00 0.11 0.05 0.03 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.12 0.00 0.06 3.02 29 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 30 ER6b ExonRegion 0 0.79 5.21 8.73 5.28 8.65 31.10 15.89 12.63 2.78 13.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.89 6.00 8.08 18.20 8.46 34.57 31 E6a_E7a KnownJunction 0 3.70 5.66 16.23 6.86 3.57 68.65 50.12 13.88 7.32 24.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.17 0.00 9.33 14.89 11.27 66.92 32 ER7a ExonRegion 0 1.61 10.70 12.40 8.40 14.02 65.10 55.01 18.35 7.56 19.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.35 6.07 7.19 23.14 10.81 69.08 33 E7_Da KnownBoundary 0 0.00 15.13 11.38 13.92 11.38 64.45 67.75 23.33 8.16 16.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.78 13.74 8.44 28.36 15.74 76.66 34 ER7b ExonRegion 0 1.89 10.31 14.25 13.82 9.72 56.01 46.83 22.53 13.20 17.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.84 18.50 14.93 31.01 24.53 86.45 35 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E7b_E9a KnownJunction 0 0.00 12.10 17.33 10.16 10.87 40.72 40.63 22.71 20.86 23.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.94 0.00 12.08 29.78 31.54 53.44 37 E8_Aa NovelBoundary 0 3.56 12.89 0.00 5.56 4.07 13.86 48.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER8a ExonRegion 0 1.38 4.32 0.00 1.99 6.10 3.30 12.97 1.26 0.60 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.52 2.09 0.36 1.02 0.48 39 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER9a ExonRegion 0 1.45 8.74 19.60 6.12 14.77 47.66 39.67 22.48 12.10 26.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.38 8.88 9.49 25.33 21.12 75.79 41 E9a_E10a KnownJunction 0 6.96 12.30 13.99 17.05 26.23 50.48 36.35 12.69 24.28 31.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.67 15.62 8.63 18.84 28.23 81.18 42 ER10a ExonRegion 0 1.89 12.20 11.65 11.42 21.90 87.42 64.86 17.07 14.14 30.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.05 10.71 12.24 22.78 29.77 68.82 43 E10_Da KnownBoundary 0 0.00 9.01 1.83 9.59 8.66 67.06 32.19 9.57 4.63 20.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.05 0.00 8.44 6.30 21.25 31.93 44 E10_Db KnownBoundary 0 0.00 3.35 0.00 0.00 4.33 2.90 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 4.35 45 E10_Dc KnownBoundary 0 0.00 9.14 3.49 7.59 0.00 49.06 40.14 11.95 4.72 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 4.80 3.13 0.00 17.39 37.99 46 ER10b ExonRegion 0 0.00 17.49 3.68 13.77 10.70 89.49 50.71 19.53 12.85 33.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.58 6.69 10.43 4.41 41.25 73.12 47 ER10c ExonRegion 0 0.00 17.08 5.64 17.44 11.24 89.86 46.60 18.32 9.88 28.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.39 9.56 6.81 6.17 50.42 69.30 48 ER10d ExonRegion 0 9.34 29.02 26.68 17.25 44.48 95.58 104.65 21.78 16.51 28.60 0.00 0.00 0.16 0.00 0.00 0.00 0.00 19.10 9.15 10.76 9.86 24.80 54.49 49 E10_Dd KnownBoundary 0 9.33 3.22 17.59 6.26 41.34 23.96 79.89 10.23 7.52 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.61 7.72 5.43 9.45 2.88 39.86 50 ER10e ExonRegion 0 5.87 7.77 13.38 6.96 18.46 17.59 33.02 7.97 5.45 9.69 0.00 0.00 0.00 0.00 0.40 0.00 0.00 4.92 0.74 3.49 2.04 10.57 15.28 51 IG9_SR3 SilentIntergenicRegion 0 4.22 5.24 2.93 3.58 7.21 2.85 8.85 4.92 8.84 3.71 4.47 2.29 6.68 3.42 4.16 1.64 2.40 0.48 2.97 7.71 1.93 12.31 3.16 52 IG9_AR4 ActiveIntergenicRegion 0 3.72 4.47 5.35 7.14 13.72 4.84 12.13 10.57 8.23 9.39 7.51 23.27 11.18 7.31 5.68 6.75 6.29 1.62 1.87 8.57 0.32 21.68 7.10