Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC015976.1 Gene 0 25.15 31.37 36.37 29.83 17.56 41.61 13.79 9.48 7.20 19.61 19.66 28.02 26.27 28.12 23.70 23.49 18.29 12.83 13.80 20.78 22.46 13.63 14.19 2 315796 Transcript 0 27.72 29.29 50.00 31.26 11.54 34.99 14.75 7.37 6.97 17.61 17.25 27.41 12.23 24.83 40.21 23.15 15.74 20.61 7.54 15.79 20.79 10.03 12.68 3 493035 Transcript 1 9.36 18.03 11.04 12.26 18.99 28.74 18.53 4.27 4.55 11.23 22.93 60.07 50.43 45.49 17.14 29.00 21.93 6.75 13.95 26.25 15.77 19.27 13.06 4 493742 Transcript 0 0.64 0.31 0.00 0.61 0.44 1.38 1.20 0.78 0.55 0.47 0.58 5.89 2.45 1.19 1.23 1.65 2.20 0.00 1.16 1.92 0.36 1.25 0.09 5 491440 Transcript 0 0.78 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 1.32 0.00 0.42 0.76 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 488581 Transcript 0 0.00 0.00 1.21 1.86 0.00 16.75 2.08 0.00 0.00 0.00 6.90 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 7 392582 Transcript 0 0.52 4.46 0.00 2.49 0.00 0.45 0.65 0.00 0.90 0.00 1.42 3.46 7.01 3.87 0.00 4.37 0.81 0.45 1.56 2.57 1.10 1.02 3.60 8 468537 Transcript 1 12.29 4.81 7.36 10.68 11.71 19.12 14.82 3.05 3.75 2.31 2.23 32.34 27.32 9.72 2.95 9.78 3.40 1.46 0.73 8.81 1.47 7.49 1.88 9 472770 Transcript 0 10.01 9.38 7.51 9.19 4.95 9.24 3.68 3.44 1.70 3.87 2.78 8.14 9.50 1.65 4.18 1.53 1.02 0.38 0.98 3.72 0.68 1.93 1.51 10 ER1a ExonRegion 0 0.00 0.29 0.25 0.57 0.00 0.26 0.56 0.00 0.00 0.25 0.00 0.50 0.00 0.19 0.04 0.42 0.00 0.00 0.90 1.80 0.00 0.00 0.00 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 2.30 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2.39 0.00 13 ER1b ExonRegion 0 1.06 0.34 0.00 0.00 0.00 1.22 1.88 0.29 0.00 1.91 0.00 0.00 0.00 2.57 3.38 1.24 0.00 0.15 0.27 1.60 0.55 1.56 0.00 14 ER1c ExonRegion 0 13.33 30.09 5.15 4.49 7.53 50.90 22.58 6.59 1.01 9.37 13.28 0.00 0.00 38.71 26.06 47.94 21.94 8.08 10.97 9.26 20.36 15.97 39.37 15 E1a_E3a KnownJunction 0 19.26 44.99 14.49 9.26 11.38 66.78 14.00 12.28 5.38 13.16 15.11 0.00 0.00 30.37 9.02 34.95 28.14 14.67 12.89 9.01 24.96 24.49 52.41 16 I1_AR1 ActiveIntronRegion 0 3.63 3.71 13.45 9.15 4.79 2.97 5.05 1.47 1.04 2.84 0.97 4.77 5.60 0.99 2.81 7.20 2.86 3.27 4.02 4.98 0.79 0.00 1.88 17 ER2a ExonRegion 0 1.56 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 2.64 0.00 0.85 1.51 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 15.29 14.05 6.69 8.46 9.96 42.80 17.84 4.46 6.32 13.30 24.16 16.29 4.88 19.68 7.41 16.54 18.81 7.59 8.72 8.54 21.57 4.69 19.86 20 E3_Ab KnownBoundary 0 22.52 3.35 2.69 4.30 8.66 16.01 12.14 2.01 6.19 14.75 7.26 18.01 21.10 14.77 20.40 7.52 25.25 1.70 9.13 8.50 16.56 2.88 15.79 21 ER3b ExonRegion 0 4.54 1.19 11.10 12.18 9.85 9.03 3.67 8.45 9.01 19.85 31.85 56.28 28.54 39.18 19.95 21.42 46.17 8.16 19.07 28.07 38.16 15.70 24.07 22 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 6.15 0.00 4.59 0.00 4.02 4.77 0.00 8.66 0.00 0.00 0.00 3.50 23 E3a_E4a KnownJunction 1 0.00 0.00 15.11 18.35 12.48 19.25 1.85 11.91 6.13 9.11 40.59 39.91 19.80 82.35 32.39 73.91 18.05 21.89 22.59 27.74 19.89 34.96 43.88 24 ER3c ExonRegion 0 0.64 0.31 0.00 0.61 0.44 1.38 1.20 0.78 0.55 0.47 0.58 5.89 2.45 1.19 1.23 1.65 2.20 0.00 1.16 1.92 0.36 1.25 0.09 25 E4_Aa NovelBoundary 0 13.19 3.35 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 6.30 0.00 2.47 4.45 0.00 4.77 0.00 0.00 2.94 0.00 0.00 0.00 26 ER4a ExonRegion 0 6.51 3.51 15.16 14.24 8.29 23.70 11.39 11.67 5.13 17.75 38.95 39.72 12.31 44.99 32.78 57.88 29.96 23.88 16.64 32.18 29.36 21.98 43.68 27 E4_Da KnownBoundary 0 14.30 8.29 14.81 12.12 11.54 36.57 21.42 14.46 8.91 25.87 33.59 59.12 13.15 33.96 40.05 52.64 32.26 28.31 13.46 52.16 36.02 18.61 40.55 28 ER4b ExonRegion 0 13.51 30.74 11.37 12.94 20.46 39.98 21.62 7.34 4.67 26.25 27.80 68.17 28.05 55.38 31.15 27.02 38.29 12.60 15.58 30.70 43.29 20.97 22.40 29 E4_Db KnownBoundary 0 6.45 35.52 13.07 8.82 18.76 51.45 26.98 0.00 2.43 9.46 22.06 29.86 38.47 33.90 15.20 0.00 12.62 2.53 4.80 33.30 16.43 11.57 6.91 30 E4b_E5a KnownJunction 1 2.89 11.45 13.54 9.39 8.49 30.55 10.69 0.00 0.00 2.50 9.16 54.62 0.00 26.66 44.13 7.01 8.88 6.43 0.00 6.01 19.21 7.47 15.71 31 E4b_E6a KnownJunction 0 0.00 0.00 1.21 1.86 0.00 16.75 2.08 0.00 0.00 0.00 6.90 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 32 ER4c ExonRegion 1 9.36 18.03 11.04 12.26 18.99 28.74 18.53 4.27 4.55 11.23 22.93 60.07 50.43 45.49 17.14 29.00 21.93 6.75 13.95 26.25 15.77 19.27 13.06 33 E4_Dc NovelBoundary 1 4245.64 2840.42 1578.83 1920.17 3371.05 2426.90 4596.63 1812.15 1611.27 1490.73 899.02 464.40 544.12 394.37 1114.41 3858.65 2033.75 2820.36 4465.07 3387.23 1250.87 1528.45 3831.69 34 I4 Intron 1 21.38 23.48 18.12 19.30 22.05 27.13 23.96 5.73 8.08 11.51 11.98 59.68 92.28 25.69 12.30 17.34 13.30 5.32 4.41 23.93 5.83 16.67 10.07 35 I4_SR1 SilentIntronRegion 0 17.69 27.52 14.77 11.12 14.63 10.97 21.06 5.37 3.84 6.23 14.59 44.00 62.88 16.22 10.58 8.51 7.73 5.06 3.32 16.06 1.72 18.43 3.82 36 I4_AR2 ActiveIntronRegion 1 22.53 22.30 19.16 21.79 24.31 32.03 24.88 5.85 9.37 13.12 11.21 64.49 101.27 28.59 12.83 20.02 14.99 5.40 4.74 26.34 7.08 16.16 11.96 37 E5_Aa NovelBoundary 1 33.56 12.76 20.70 21.34 27.67 34.58 31.93 10.56 12.33 18.08 9.37 107.28 112.82 47.15 18.54 20.08 26.18 3.69 13.18 42.50 5.56 14.82 15.71 38 ER5a ExonRegion 1 27.50 32.22 49.59 30.60 32.47 53.36 20.48 9.07 12.10 35.04 38.29 116.63 102.83 50.24 41.94 30.66 36.78 12.70 20.54 50.46 20.37 33.00 22.21 39 E5_Da NovelBoundary 0 7.56 20.79 23.00 25.47 37.61 7.38 16.96 11.34 6.28 8.78 15.53 42.46 36.04 19.19 26.82 7.26 19.64 6.14 4.42 23.84 2.97 14.45 3.93 40 E5a_E6a KnownJunction 0 20.00 22.89 34.42 35.23 24.02 61.10 16.96 4.48 13.60 18.83 29.01 36.76 18.51 33.61 40.05 7.78 12.53 11.69 13.84 17.45 25.21 16.90 12.29 41 I5 Intron 0 9.89 10.54 12.80 14.24 10.87 18.63 16.28 6.54 4.49 7.47 11.00 35.63 58.19 18.57 9.80 7.25 11.74 3.55 4.53 11.89 2.91 10.58 5.67 42 I5_AR1 ActiveIntronRegion 0 11.08 9.96 17.85 20.40 13.79 25.98 18.93 8.76 4.87 11.46 11.60 50.14 75.79 23.85 17.29 10.15 17.23 4.51 4.65 18.33 3.47 10.57 9.53 43 I5_SR1 SilentIntronRegion 0 9.16 10.99 9.52 10.23 9.00 13.85 14.61 5.10 4.27 4.86 10.67 26.19 46.84 15.16 4.86 5.36 8.15 2.93 4.48 7.67 2.56 10.66 3.13 44 E6_Aa NovelBoundary 1 11.04 2.83 3.99 8.86 4.33 24.42 18.11 1.93 4.46 6.26 2.53 18.16 47.72 17.54 16.19 4.36 8.98 2.24 0.00 14.45 0.00 5.45 0.00 45 ER6a ExonRegion 0 35.98 28.52 42.92 35.59 22.34 75.23 18.47 9.73 12.55 28.25 38.66 81.45 45.37 36.30 49.05 27.44 27.48 12.89 13.78 28.80 23.83 16.77 14.75 46 E6_Da NovelBoundary 1 0.00 2.76 1.54 3.43 3.40 2.78 8.17 2.55 2.95 4.38 0.00 32.41 46.75 9.65 0.00 7.69 0.00 8.62 0.00 3.26 5.25 15.25 4.35 47 E6a_E7b KnownJunction 0 65.12 44.86 56.65 28.07 38.46 73.20 35.90 17.79 10.62 28.72 46.43 78.03 39.93 33.20 60.82 33.50 36.47 4.39 23.91 39.05 30.15 29.02 16.13 48 I6 Intron 0 1.94 4.29 3.12 5.37 4.28 7.61 7.12 1.23 2.06 3.48 5.36 24.80 23.37 9.97 2.88 5.46 4.85 1.57 2.40 8.21 2.63 6.66 3.13 49 I6_SR1 SilentIntronRegion 0 1.32 4.35 3.16 4.28 3.60 7.19 6.46 1.39 2.38 2.33 9.61 22.57 19.86 14.49 2.17 10.52 6.66 3.76 1.79 14.42 8.10 5.23 5.09 50 I6_AR1 ActiveIntronRegion 0 1.04 3.65 3.46 5.77 2.80 6.17 7.90 0.57 2.44 2.97 4.03 36.44 20.77 10.28 2.30 3.17 4.45 0.34 3.58 7.85 0.51 8.33 3.26 51 I6_SR2 SilentIntronRegion 0 2.55 4.49 2.99 5.77 5.10 8.31 7.19 1.38 1.78 4.22 3.77 21.96 25.97 7.69 3.43 3.80 4.12 0.93 2.29 5.34 0.71 6.79 2.14 52 E7_Aa NovelBoundary 1 6.45 13.16 5.65 11.25 0.00 21.07 4.50 0.00 7.64 7.63 4.74 39.01 41.56 6.83 0.00 12.22 4.58 2.11 0.00 6.07 2.41 8.45 0.00 53 ER7a ExonRegion 1 12.29 4.81 7.36 10.68 11.71 19.12 14.82 3.05 3.75 2.31 2.23 32.34 27.32 9.72 2.95 9.78 3.40 1.46 0.73 8.81 1.47 7.49 1.88 54 E7_Ab KnownBoundary 0 10.37 0.00 8.28 17.65 25.47 31.86 6.45 2.55 9.00 1.07 2.00 26.11 19.97 19.19 0.00 7.35 4.30 8.50 0.00 14.38 2.66 6.18 12.55 55 ER7b ExonRegion 0 39.51 33.81 65.76 42.79 38.54 57.86 31.76 24.28 17.26 36.97 38.72 73.39 55.70 50.77 40.17 30.74 40.83 18.17 17.74 38.17 42.47 25.56 19.78 56 E7_Da NovelBoundary 1 7.56 0.00 0.00 9.92 3.31 5.11 2.25 3.86 1.79 1.16 0.00 25.66 15.10 22.19 0.00 3.50 8.79 5.02 0.00 6.01 3.15 0.00 8.37 57 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E7a_E10a KnownJunction 0 44.97 42.89 63.75 46.68 51.61 64.45 35.64 16.18 14.67 38.20 36.32 47.42 47.40 59.57 36.84 30.08 39.27 32.62 8.09 16.81 51.34 27.92 26.04 59 I7 Intron 0 1.62 4.91 2.79 5.15 2.15 6.49 6.92 2.80 2.29 1.92 3.81 15.95 17.51 5.91 1.85 3.71 5.31 1.41 1.02 6.50 1.06 3.77 2.72 60 I7_SR1 SilentIntronRegion 0 1.75 5.43 3.19 5.52 2.34 6.67 6.95 3.08 2.63 1.97 3.65 17.72 18.36 5.73 2.02 3.56 5.93 1.27 0.88 6.95 0.81 3.94 2.84 61 ER8a ExonRegion 0 1.04 8.92 0.00 4.98 0.00 0.90 1.30 0.00 1.81 0.00 2.84 6.91 14.03 7.73 0.00 8.74 1.62 0.91 3.12 5.14 2.20 2.04 7.20 62 E8_Da NovelBoundary 0 3.78 3.35 10.17 7.23 0.00 5.45 9.36 3.49 7.32 4.70 7.90 31.51 6.82 15.13 0.00 8.54 25.62 2.57 4.61 2.81 0.00 17.39 6.91 63 I8 Intron 0 7.26 20.60 7.93 12.09 7.73 11.60 7.35 3.27 4.42 4.80 5.52 20.97 18.66 8.90 2.42 6.24 6.11 3.12 3.08 9.13 3.46 6.78 4.12 64 I8_SR1 SilentIntronRegion 0 0.00 7.50 1.12 2.50 1.64 0.00 3.25 0.00 0.00 2.10 4.75 6.57 14.24 9.74 0.00 9.13 6.05 0.00 0.00 0.00 2.71 1.28 0.00 65 I8_AR1 ActiveIntronRegion 0 8.80 19.29 7.58 9.89 4.69 6.63 5.59 3.17 3.11 2.44 4.77 15.96 19.96 9.40 1.22 5.79 6.22 3.52 2.90 6.50 3.57 5.69 4.58 66 I8_SR2 SilentIntronRegion 0 7.97 16.15 7.62 13.30 10.38 8.99 9.11 4.50 4.30 2.56 4.60 21.68 22.30 9.34 2.55 6.07 7.07 1.20 1.78 12.28 2.92 9.67 3.28 67 I8_AR2 ActiveIntronRegion 0 5.08 24.46 6.43 9.95 7.27 12.29 6.27 2.26 4.79 4.16 5.83 20.94 18.79 8.44 1.45 6.76 6.30 4.16 2.35 9.87 4.40 5.42 4.05 68 I8_AR3 ActiveIntronRegion 0 10.21 15.67 9.85 15.35 10.11 12.48 9.54 4.25 6.67 8.64 7.58 19.20 17.88 11.58 5.62 6.82 6.55 4.00 4.21 11.51 0.86 6.00 5.18 69 I8_SR3 SilentIntronRegion 0 10.36 18.87 12.16 18.12 9.21 17.28 9.77 4.76 4.54 9.32 5.70 26.75 14.99 8.40 4.98 5.10 4.65 1.92 6.00 7.29 2.37 9.36 4.66 70 E9_Aa NovelBoundary 0 28.00 34.80 17.56 17.21 8.66 20.27 12.06 6.16 3.33 11.20 15.06 21.61 20.13 5.00 0.00 0.00 0.00 3.81 4.14 8.44 9.14 3.00 0.00 71 ER9a ExonRegion 0 20.02 18.77 15.02 18.38 9.90 18.48 7.35 6.89 3.41 7.73 5.56 16.29 19.01 3.31 8.35 3.06 2.04 0.76 1.97 7.44 1.36 3.86 3.02 72 E9_Da NovelBoundary 0 31.56 8.62 37.20 30.20 19.61 35.83 31.53 11.62 0.00 15.61 5.32 25.21 6.82 3.00 15.82 12.82 0.00 4.85 0.00 5.69 3.15 11.70 0.00 73 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E10_Aa NovelBoundary 0 13.41 11.25 14.34 10.49 4.33 29.87 2.08 0.00 4.31 5.18 4.11 6.30 8.28 0.00 10.75 0.00 0.00 0.00 3.95 0.00 9.39 8.82 4.35 75 ER10a ExonRegion 0 66.02 43.00 83.16 55.81 41.88 115.79 32.72 30.92 14.63 46.20 54.54 57.79 58.53 65.68 49.29 59.23 46.04 36.56 17.13 43.62 44.59 21.79 35.24 76 E10a_E11a KnownJunction 0 79.79 75.91 106.35 55.97 55.94 103.86 33.21 25.59 12.27 38.79 42.48 44.86 19.32 74.22 72.07 70.92 41.51 33.91 45.93 41.55 30.39 17.57 23.47 77 E11_Aa NovelBoundary 0 10.00 9.08 4.79 3.60 0.00 26.18 0.00 6.70 0.00 1.67 2.63 6.15 12.82 4.59 4.45 0.00 17.02 2.20 4.24 6.52 3.15 5.39 7.34 78 ER11a ExonRegion 0 62.79 46.94 108.42 48.30 38.80 86.19 29.18 19.70 16.01 35.72 45.99 32.92 50.22 41.65 53.01 56.53 33.83 34.53 28.80 40.78 33.47 25.35 24.53 79 E11a_E12a KnownJunction 0 57.71 59.33 86.16 46.15 26.99 70.07 28.57 11.71 14.70 30.97 26.27 19.96 47.72 38.02 43.88 27.26 57.22 30.05 13.46 31.26 45.90 25.41 30.47 80 ER12a ExonRegion 0 45.90 49.54 87.65 40.84 40.30 45.30 27.14 20.77 14.67 36.75 37.33 30.17 29.90 54.84 54.31 31.86 43.74 38.05 27.52 45.41 44.14 26.14 13.31 81 E12_Da KnownBoundary 0 30.23 41.18 75.87 27.74 24.62 43.67 19.39 18.98 10.47 29.71 19.79 22.81 20.13 31.37 37.95 11.36 15.52 33.70 16.09 19.62 13.22 16.41 3.24 82 E12_Db KnownBoundary 0 14.82 0.00 5.50 5.53 0.00 10.56 2.25 0.00 3.39 0.00 2.42 6.30 8.28 9.77 5.44 4.36 0.00 2.57 0.00 3.13 5.68 3.06 0.00 83 E12b_E12b KnownJunction 0 73.57 52.89 127.94 64.19 16.21 48.55 34.80 15.77 17.65 38.60 36.80 39.01 27.11 42.09 83.81 56.57 35.25 57.41 8.56 30.74 30.33 16.59 16.56 84 ER12b ExonRegion 0 59.40 50.84 118.94 56.33 26.22 55.14 33.45 21.43 17.21 38.92 39.43 37.52 44.09 54.14 60.73 49.34 33.01 57.03 15.93 37.16 33.06 18.61 13.90 85 ER12c ExonRegion 0 5.22 3.07 4.25 3.90 3.14 9.15 2.70 2.35 0.98 3.40 1.79 2.87 6.77 4.17 3.28 2.12 4.33 1.12 0.97 2.56 5.40 1.54 0.12 86 E12_Ab KnownBoundary 0 17.48 6.31 4.64 1.90 6.79 15.56 4.15 0.00 0.00 3.33 2.00 0.00 0.00 2.35 4.45 3.76 8.13 0.00 4.52 3.26 2.84 0.00 0.00 87 ER12d ExonRegion 0 104.96 72.21 98.09 59.99 35.39 97.74 40.55 14.51 9.96 34.79 38.54 42.03 37.30 57.93 53.97 63.28 45.29 41.40 24.74 30.29 42.57 20.53 29.27 88 E12_Dc KnownBoundary 0 152.92 79.66 65.11 49.98 40.07 57.01 47.87 17.62 5.99 30.54 30.80 24.76 22.08 45.74 54.27 36.14 29.17 23.26 17.98 14.51 36.94 7.84 4.35 89 E12_Dd KnownBoundary 0 71.35 109.26 58.93 43.72 25.81 65.13 19.70 6.37 5.01 22.97 16.74 6.30 19.32 27.08 35.48 16.83 17.95 32.38 9.32 9.59 14.58 14.51 25.35 90 ER12e ExonRegion 0 111.75 99.85 79.53 60.78 40.94 70.69 36.34 16.51 7.41 38.13 29.96 17.97 17.12 44.91 47.29 36.71 28.72 37.05 15.13 14.89 32.17 12.19 19.53 91 ER12f ExonRegion 0 34.44 52.53 58.26 50.86 21.45 60.62 12.94 13.69 10.22 29.09 23.04 15.51 21.81 30.39 32.85 28.61 18.83 18.61 20.68 24.62 33.61 16.07 18.44