Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SP3 Gene 0 59.66 89.70 59.95 81.65 111.54 111.21 146.76 69.52 59.31 98.32 89.13 180.09 118.49 105.71 49.12 71.57 93.46 52.92 38.08 70.02 100.26 229.73 127.44 2 455789 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 310015 Transcript 0 34.70 26.51 23.01 33.88 44.14 42.17 61.90 36.95 28.47 30.22 34.76 92.92 61.63 30.49 28.70 25.95 37.62 6.91 8.61 21.58 9.05 95.43 36.09 4 475175 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 462904 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 490182 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.18 7 416195 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 418194 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 498647 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 483084 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.01 1.16 0.00 0.00 0.01 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 465379 Transcript 0 5.05 13.57 2.79 14.02 16.98 12.14 32.27 7.52 7.69 11.82 3.49 13.98 12.01 3.08 2.02 3.72 5.15 8.50 2.21 11.73 4.25 10.01 3.68 12 IG36_AR2 ActiveIntergenicRegion 0 27.39 3.94 26.35 13.52 18.24 7.05 17.07 10.31 3.16 11.42 3.33 22.62 7.56 10.42 12.17 8.67 8.01 2.19 0.85 4.03 2.05 1.11 0.97 13 IG36_SR1 SilentIntergenicRegion 0 6.47 3.21 14.47 8.45 12.26 3.34 12.03 6.87 3.58 6.15 4.50 30.81 7.33 10.19 5.19 8.19 5.33 1.72 2.01 5.02 1.72 2.00 2.07 14 IG36_AR1 ActiveIntergenicRegion 0 3.93 2.75 5.29 5.01 5.74 2.55 7.66 4.47 1.98 8.40 6.62 15.78 4.25 10.92 6.51 10.81 6.91 4.29 2.25 7.32 6.64 3.79 7.51 15 ER1a ExonRegion 0 1.83 1.56 6.29 1.19 2.09 8.65 6.39 3.14 3.26 6.56 8.71 4.48 1.39 16.03 5.46 15.94 13.47 9.38 5.78 6.24 27.39 24.35 20.06 16 E1_Ab KnownBoundary 0 3.19 12.37 4.23 2.06 12.05 48.72 28.22 8.91 10.10 6.37 36.06 0.00 0.00 37.02 16.94 65.11 63.39 13.14 33.41 25.95 24.28 13.90 18.52 17 E1_Ac KnownBoundary 0 17.41 6.25 2.54 4.99 3.23 36.40 10.29 11.05 1.45 7.95 22.53 0.00 0.00 21.48 4.45 15.98 27.12 19.28 8.09 15.53 34.60 17.15 24.50 18 ER1b ExonRegion 1 8.47 8.13 8.58 3.41 10.70 66.48 33.10 13.83 7.41 10.75 47.84 0.54 0.00 62.53 11.61 60.19 65.19 24.02 31.85 34.31 55.37 39.33 31.94 19 ER1c ExonRegion 0 2.97 8.18 3.96 3.62 3.22 32.68 14.09 4.83 3.04 7.52 25.92 7.13 3.54 28.68 10.13 20.17 28.03 12.27 8.83 15.09 37.97 21.91 30.55 20 E1_Da NovelBoundary 0 7.56 0.00 11.44 6.36 3.74 13.29 5.43 1.64 4.83 3.79 14.90 11.70 6.01 35.32 5.19 18.11 43.48 15.21 25.22 16.43 33.85 31.41 22.28 21 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E1a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1b_E3a KnownJunction 1 0.00 3.35 9.20 11.22 0.00 7.72 8.21 9.61 5.03 15.53 32.59 11.85 0.00 45.97 0.00 24.27 34.32 34.03 20.99 40.14 39.72 33.68 3.59 24 ER1d ExonRegion 1 2.12 2.03 7.35 8.18 2.68 8.05 7.37 6.91 3.87 9.23 20.59 12.80 4.69 51.12 4.54 19.25 34.16 20.89 23.41 29.60 38.23 24.55 10.85 25 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.10 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 27 ER3a ExonRegion 1 1.22 0.90 3.09 2.85 1.64 8.44 5.55 3.32 2.35 6.63 19.91 12.12 4.17 33.60 2.39 9.61 9.57 12.63 10.48 21.37 28.40 12.15 4.73 28 E3_Ab KnownBoundary 0 0.00 2.83 2.93 3.16 15.79 24.08 9.32 2.55 2.86 7.82 13.32 6.30 6.66 13.36 8.90 7.78 4.21 27.19 0.00 8.44 14.83 0.00 21.34 29 ER3b ExonRegion 0 2.94 2.14 2.89 2.84 5.67 40.90 20.02 0.00 2.22 3.93 20.15 2.42 0.95 25.88 12.29 12.95 9.01 10.93 4.75 16.48 21.10 22.39 22.20 30 E3a_E4b KnownJunction 0 0.00 2.70 1.83 2.06 3.48 18.11 12.45 0.00 2.81 5.08 15.11 0.00 0.00 21.07 4.33 4.36 8.04 20.64 4.24 14.00 8.53 15.19 19.29 31 E3a_E6a KnownJunction 0 3.78 0.00 1.12 0.00 0.00 5.45 0.00 0.00 0.00 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 32 ER4a ExonRegion 0 1.55 1.54 2.04 1.88 0.02 3.49 4.30 3.74 2.11 7.53 7.57 1.21 0.92 16.83 2.33 11.90 11.19 9.88 3.77 7.01 29.11 16.41 32.34 33 E4_Ab KnownBoundary 0 10.37 8.35 2.69 11.05 0.00 29.87 10.11 12.90 7.78 22.97 23.74 0.00 6.82 45.56 4.45 30.76 33.94 47.75 8.19 20.58 81.92 44.27 94.92 34 ER4b ExonRegion 1 11.43 27.42 21.91 9.95 10.75 55.81 41.17 13.19 11.06 41.12 60.35 17.74 13.99 91.71 10.15 51.48 79.65 53.31 17.99 42.45 153.21 87.76 126.54 35 E4a_E6a KnownJunction 1 10.67 39.73 24.54 19.71 8.32 50.60 26.54 26.21 30.53 69.63 91.29 36.61 26.46 112.66 4.45 41.87 88.45 71.09 0.00 34.83 149.38 98.40 130.09 36 E5_Aa NovelBoundary 0 17.19 3.16 19.75 14.98 23.60 7.33 47.92 12.20 11.37 11.36 4.95 18.61 0.00 5.47 17.80 14.44 7.95 1.87 14.02 10.93 2.59 0.00 3.59 37 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.02 0.07 0.00 0.00 0.03 0.01 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E5_Da NovelBoundary 0 6.59 2.83 24.90 19.11 29.12 13.57 35.07 1.64 14.70 15.90 4.90 0.00 0.00 0.00 4.45 0.00 0.00 0.00 8.09 6.01 2.97 11.63 0.00 39 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E6_Aa NovelBoundary 0 6.00 0.00 1.27 5.36 3.65 2.90 16.08 1.77 1.10 3.60 2.68 0.00 0.00 0.00 0.00 0.00 4.30 0.00 14.40 0.00 0.00 3.12 6.57 41 ER6a ExonRegion 1 8.47 33.35 19.61 19.90 20.87 60.15 37.87 26.27 25.44 74.09 107.08 38.97 18.76 134.80 7.54 50.53 122.79 66.15 14.65 42.13 194.37 119.59 132.74 42 ER6b ExonRegion 1 28.68 81.88 51.40 55.11 56.66 94.58 133.55 63.92 80.97 157.26 216.91 113.42 108.73 231.93 41.58 164.32 263.17 156.42 67.76 151.54 342.43 344.63 326.87 43 E6_Da KnownBoundary 1 19.93 74.07 36.46 49.08 29.03 41.62 89.34 34.63 68.40 127.97 146.51 84.33 60.55 136.91 23.61 91.51 203.09 85.68 46.50 85.90 175.45 202.62 227.75 44 E6_Db KnownBoundary 1 60.68 75.58 30.34 54.97 38.96 62.07 63.73 53.44 54.37 107.23 170.04 70.67 39.93 118.08 29.92 93.82 191.12 68.03 81.41 105.97 192.68 253.63 288.44 45 ER6c ExonRegion 0 51.70 119.69 61.62 97.93 66.51 88.55 130.32 89.14 124.57 223.48 311.75 220.80 147.40 330.86 76.26 164.74 381.49 168.67 111.03 194.83 358.89 411.64 480.35 46 ER6d ExonRegion 1 53.35 123.16 75.08 133.17 116.10 180.20 236.29 120.27 164.47 249.03 345.53 430.84 273.26 349.81 68.10 247.35 406.31 206.14 116.64 251.23 385.56 624.68 472.53 47 E6_Dc KnownBoundary 1 52.23 87.88 75.51 150.96 163.41 248.44 348.40 138.42 193.05 283.77 246.27 631.86 368.97 430.99 93.08 238.06 343.24 117.85 99.30 247.81 359.05 680.30 391.48 48 ER6e ExonRegion 1 74.73 150.86 110.33 187.28 175.72 271.11 361.20 174.56 184.48 295.26 434.65 727.54 470.17 468.92 96.13 310.47 524.46 273.86 191.88 282.24 638.69 762.57 592.63 49 E6_Dd KnownBoundary 1 76.38 173.92 112.41 168.94 195.16 249.97 351.36 174.61 172.83 282.02 339.19 817.62 627.39 572.55 100.01 253.61 493.41 298.22 203.96 314.79 619.94 700.14 517.39 50 ER6f ExonRegion 0 107.67 194.61 125.81 160.33 212.72 283.80 344.39 158.78 167.69 264.94 361.60 618.86 486.27 426.01 103.75 308.85 403.82 256.36 148.78 226.86 533.50 691.11 539.54 51 E6e_E7a KnownJunction 0 211.74 191.94 93.58 135.45 234.30 274.44 412.52 131.60 118.43 241.33 332.66 373.92 300.63 464.60 119.54 269.25 311.17 249.96 142.31 173.41 440.78 475.05 555.29 52 I6_AR1 ActiveIntronRegion 0 25.92 27.91 8.11 24.20 16.66 1.80 36.25 8.72 4.79 8.25 2.05 16.73 20.35 0.32 4.43 8.02 10.97 1.81 2.61 11.01 1.26 3.30 5.20 53 I6_SR2 SilentIntronRegion 0 19.19 19.97 7.03 12.32 13.05 2.76 27.30 5.05 2.36 2.36 0.48 17.43 8.02 0.71 4.56 8.20 6.79 0.81 2.39 6.61 1.38 0.17 3.07 54 I6_AR4 ActiveIntronRegion 0 16.91 9.16 8.98 12.90 11.51 6.01 31.18 3.69 4.52 3.50 2.38 17.47 10.45 0.51 7.06 6.09 4.73 1.70 2.61 5.23 2.26 0.00 3.61 55 I6_SR6 SilentIntronRegion 0 15.55 5.88 4.48 7.22 8.30 2.19 22.45 6.44 4.00 4.08 1.85 15.26 11.47 0.88 5.16 4.10 8.43 1.42 2.85 4.45 2.03 1.80 3.33 56 ER7a ExonRegion 0 125.72 169.76 111.83 141.63 277.75 333.41 390.64 131.52 133.37 227.32 304.02 396.43 252.39 374.19 131.35 250.00 323.39 197.94 150.16 201.84 412.20 552.67 477.67 57 E7_Da NovelBoundary 0 3.19 5.79 1.83 5.43 14.01 5.79 23.41 0.00 2.72 7.76 2.68 6.30 0.00 7.06 0.00 0.00 13.09 14.96 0.00 21.35 0.00 5.45 3.76 58 E7a_E8b KnownJunction 0 128.69 174.05 148.63 192.18 270.37 467.29 412.57 176.62 215.65 304.94 319.87 453.30 257.78 486.61 180.48 338.37 320.62 241.92 194.74 211.95 509.97 582.51 611.46 59 ER8a ExonRegion 0 5.05 13.57 2.79 14.02 16.98 12.14 32.27 7.52 7.69 11.82 3.49 13.98 12.01 3.08 2.02 3.72 5.15 8.50 2.21 11.73 4.25 10.01 3.68 60 E8_Ab KnownBoundary 0 9.78 23.42 4.35 32.66 38.54 27.31 69.91 13.92 9.98 28.69 4.90 6.75 13.64 2.47 4.45 7.52 8.51 3.77 4.80 22.43 5.99 7.65 8.71 61 ER8b ExonRegion 0 159.48 170.60 131.90 232.00 303.66 384.85 407.55 184.90 190.09 288.08 382.74 487.00 273.19 412.05 175.51 305.45 393.06 212.17 187.32 232.03 399.40 648.97 542.23 62 E8a_E9a KnownJunction 0 190.77 156.16 144.82 252.58 257.64 370.53 452.36 194.57 162.41 289.09 343.77 498.16 294.30 337.46 175.54 236.35 347.55 198.60 186.26 195.20 316.73 538.67 415.89 63 I8 Intron 0 14.83 6.64 7.99 10.73 16.44 10.53 27.65 9.07 3.55 6.71 2.24 10.44 6.19 2.52 3.10 2.76 5.02 3.01 2.02 6.32 3.20 5.25 4.00 64 I8_AR1 ActiveIntronRegion 0 18.85 16.51 7.70 12.98 18.35 6.48 35.41 17.65 1.70 7.77 1.51 14.96 9.91 2.21 5.88 2.84 6.70 4.50 2.03 8.87 3.84 8.69 4.37 65 I8_AR2 ActiveIntronRegion 1 1.06 24.06 6.13 18.97 36.35 7.34 23.39 17.28 0.00 9.56 1.93 28.14 4.69 0.81 11.61 0.00 2.75 8.93 0.00 14.54 0.00 10.42 3.92 66 I8_AR3 ActiveIntronRegion 1 0.00 25.67 6.13 21.47 30.44 7.34 22.67 16.64 0.00 10.04 1.93 22.19 0.00 2.03 10.88 2.97 0.00 5.77 0.00 15.96 0.00 8.33 6.61 67 I8_AR4 ActiveIntronRegion 0 2.60 10.17 3.35 10.41 18.47 9.15 36.02 6.06 0.00 2.92 0.12 13.51 4.75 3.40 0.00 1.50 2.03 0.16 0.00 8.41 0.00 5.72 5.09 68 I8_AR6 ActiveIntronRegion 0 10.47 8.99 15.41 20.08 14.36 9.46 15.12 17.92 2.47 4.04 0.00 8.89 4.69 2.91 4.73 0.31 3.65 1.85 9.56 8.85 0.00 6.80 2.78 69 I8_AR7 ActiveIntronRegion 0 26.74 14.34 15.13 18.49 23.99 8.04 32.30 17.43 2.45 6.10 4.03 9.16 7.04 6.14 3.05 2.38 8.36 1.39 0.85 13.97 1.87 9.38 8.32 70 I8_AR8 ActiveIntronRegion 0 35.34 8.38 11.44 9.30 16.49 7.43 31.72 14.18 4.99 8.04 3.11 9.22 3.87 2.07 3.06 1.65 8.00 1.93 3.53 9.30 1.22 4.98 5.08 71 I8_AR9 ActiveIntronRegion 0 27.55 5.55 12.54 14.76 20.90 11.56 26.29 7.39 6.01 8.48 3.33 14.77 7.72 4.03 4.48 3.24 7.05 4.59 1.13 10.05 3.91 3.48 3.82 72 I8_AR10 ActiveIntronRegion 0 33.21 5.79 9.33 13.89 4.63 3.67 14.82 1.79 1.81 5.82 0.00 7.99 0.00 3.31 5.47 15.89 6.09 13.86 6.25 11.21 6.61 4.01 3.39 73 I8_AR11 ActiveIntronRegion 0 14.21 0.00 6.13 7.20 0.00 0.00 3.97 0.49 1.24 2.29 0.00 4.33 0.00 1.62 1.24 11.89 3.30 7.39 0.00 8.21 4.41 2.08 2.94 74 ER9a ExonRegion 0 212.83 320.55 219.88 276.36 393.60 325.23 428.02 218.30 153.83 284.29 139.52 440.12 245.27 190.52 155.00 105.26 115.19 56.46 68.17 148.76 85.44 624.23 197.72 75 E9_Da KnownBoundary 0 9.26 10.46 0.00 7.23 16.21 7.50 16.38 3.70 7.09 11.95 6.63 22.96 0.00 4.53 0.00 0.00 8.23 0.00 4.52 8.76 0.00 30.62 7.17 76 E9_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 E9_Dc KnownBoundary 0 0.00 6.25 2.60 12.25 20.88 5.11 20.58 15.07 7.58 11.01 2.11 5.85 0.00 2.41 0.00 10.51 8.32 0.00 0.00 18.22 2.66 16.66 0.00 78 ER9b ExonRegion 1 25.40 26.44 7.35 20.44 45.49 47.68 56.93 17.28 29.64 41.29 19.33 112.57 65.66 24.36 14.51 17.83 23.11 1.85 6.37 27.66 2.20 89.59 20.56 79 ER9c ExonRegion 1 23.28 26.44 7.35 20.44 42.81 34.84 52.96 17.28 27.17 41.29 15.46 116.90 60.97 22.74 14.51 14.86 23.11 1.85 6.37 27.66 2.20 83.34 20.56 80 ER9d ExonRegion 0 34.70 26.51 23.01 33.88 44.14 42.17 61.90 36.95 28.47 30.22 34.76 92.92 61.63 30.49 28.70 25.95 37.62 6.91 8.61 21.58 9.05 95.43 36.09 81 IG35 Intergenic 0 10.10 10.74 4.88 7.59 14.65 17.12 22.27 10.28 12.43 12.05 15.81 33.22 24.49 12.81 11.68 14.67 26.10 4.82 4.40 11.75 9.32 39.45 24.68 82 IG35_SR2 SilentIntergenicRegion 0 11.08 11.16 4.85 8.63 13.67 19.77 24.48 11.86 15.41 13.95 19.51 41.95 30.80 15.72 12.62 17.49 32.34 4.99 5.33 14.70 11.48 49.86 28.53 83 IG35_AR2 ActiveIntergenicRegion 0 16.21 20.85 11.37 11.07 40.28 24.04 35.05 15.38 10.03 15.75 14.56 24.57 15.59 10.55 17.70 17.74 18.85 7.88 4.55 9.11 8.87 31.36 29.35