Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SCN9A Gene 0 12.16 137.97 30.66 61.02 129.54 341.94 154.93 157.80 231.71 91.06 0.04 0.14 0.16 0.12 0.42 0.04 0.00 183.37 3.38 178.80 1.51 3.98 2.43 2 409672 Transcript 0 0.00 6.48 8.31 4.55 4.06 12.24 10.53 15.06 38.95 17.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.79 3.07 76.59 2.34 0.12 0.84 3 375387 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 437206 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 303354 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 429689 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 409435 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 454569 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 452182 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 472119 Transcript 0 0.23 4.99 1.84 3.38 2.61 4.57 10.00 5.31 4.65 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 5.07 0.00 0.00 0.00 11 ER1a ExonRegion 0 0.00 3.35 2.24 2.18 4.16 11.97 11.62 5.77 13.50 6.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.29 2.07 37.68 1.68 0.36 2.52 12 E1a_E2a KnownJunction 0 0.00 7.96 12.89 7.39 0.00 9.48 10.69 11.75 49.42 21.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 235.99 3.95 102.71 3.15 0.00 0.00 13 ER2a ExonRegion 0 0.00 8.13 9.80 4.09 8.03 15.28 9.27 27.66 53.93 25.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 359.08 3.19 89.36 2.20 0.00 0.00 14 ER2b ExonRegion 0 1.41 15.21 8.19 6.39 20.51 67.85 25.13 29.60 77.32 30.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 406.74 1.26 137.77 2.11 0.00 10.83 15 E2_Ac KnownBoundary 0 3.78 26.31 5.65 7.89 32.34 132.31 54.50 49.62 106.16 38.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 481.23 3.86 200.89 2.97 0.00 17.24 16 ER2c ExonRegion 0 3.52 29.40 7.85 17.38 30.25 119.07 78.07 45.57 123.72 43.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 292.18 3.63 178.84 5.95 3.32 6.06 17 E2a_E3a KnownJunction 0 0.00 23.48 13.54 25.34 30.48 77.34 45.93 54.87 153.50 52.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 285.45 0.00 219.49 0.00 0.00 3.24 18 ER3a ExonRegion 0 0.00 33.45 8.39 11.67 29.27 87.76 83.31 56.86 131.27 46.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 218.32 1.70 203.64 2.58 6.18 1.44 19 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E3b_E4b KnownJunction 0 0.00 29.53 5.23 22.14 38.12 96.88 99.28 68.59 135.56 42.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 210.75 3.95 155.64 2.72 8.39 0.00 21 ER3b ExonRegion 0 0.00 24.40 6.13 19.08 32.11 84.35 78.11 70.87 140.80 41.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 212.49 3.19 146.81 2.20 6.25 0.00 22 ER4a ExonRegion 0 0.00 4.88 1.23 3.82 6.96 17.97 17.48 14.52 28.90 8.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.82 0.64 32.77 0.44 1.25 0.00 23 E4_Ac KnownBoundary 0 5.78 55.65 17.80 26.64 60.36 154.40 211.72 80.18 177.66 50.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 256.55 8.66 277.91 0.00 8.45 0.00 24 ER4b ExonRegion 0 1.36 31.96 8.88 22.05 41.67 113.56 132.40 72.60 151.96 45.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 240.87 5.80 201.90 0.94 6.70 0.00 25 ER4c ExonRegion 0 4.27 38.10 11.77 16.11 27.24 108.25 111.95 63.87 134.47 45.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 201.28 3.19 220.75 0.76 4.30 3.51 26 E4a_E5a KnownJunction 0 3.19 35.52 9.46 8.79 27.84 90.97 69.91 47.69 104.28 41.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 135.55 9.22 208.37 3.15 5.82 4.35 27 ER5a ExonRegion 0 1.87 43.38 9.42 13.94 33.52 120.16 93.80 43.89 116.51 45.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 131.96 2.57 177.72 3.83 4.75 1.82 28 E5a_E6a KnownJunction 0 0.00 55.65 10.91 16.12 26.40 155.54 133.37 38.65 96.12 33.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 93.39 4.80 111.66 2.53 0.00 0.00 29 E5a_E7a KnownJunction 0 0.00 6.71 0.00 1.76 11.12 5.39 6.45 4.35 7.26 12.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.06 0.00 62.38 0.00 0.00 0.00 30 ER6a ExonRegion 0 0.71 40.74 11.88 11.17 21.90 96.31 85.57 49.13 121.77 30.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89.05 9.14 148.61 2.85 2.92 1.31 31 E6a_E8a KnownJunction 0 3.78 32.95 15.20 6.79 39.98 92.90 68.98 33.60 88.51 19.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75.82 4.61 144.39 5.00 3.12 3.59 32 ER7a ExonRegion 0 0.00 9.90 1.03 1.42 5.18 7.73 8.16 10.41 8.78 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91.89 0.00 62.23 0.53 0.00 1.63 33 E7a_E8a KnownJunction 0 0.00 6.51 0.00 3.66 0.00 11.41 4.15 9.04 6.60 4.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.84 0.00 49.09 3.15 0.00 0.00 34 ER8a ExonRegion 0 1.74 50.85 11.94 20.67 32.91 119.79 90.53 49.69 109.44 31.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 176.40 4.49 180.48 5.87 2.86 4.00 35 E8_Da KnownBoundary 0 0.00 3.35 3.49 6.23 0.00 0.00 28.31 3.29 7.32 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.72 0.00 8.37 0.00 0.00 0.00 36 E8a_E9a KnownJunction 0 0.00 38.68 9.34 18.75 19.27 168.48 107.93 53.11 120.08 31.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 223.39 12.05 196.67 5.62 2.69 7.43 37 ER8b ExonRegion 0 0.23 4.99 1.84 3.38 2.61 4.57 10.00 5.31 4.65 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 5.07 0.00 0.00 0.00 38 Ix_AR1 ActiveIntronRegion 0 1.07 8.73 4.46 9.05 2.57 5.86 18.14 34.15 17.01 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 1.38 12.96 0.00 0.00 0.00 39 ER9a ExonRegion 0 3.31 29.90 9.86 23.23 14.01 154.33 85.56 54.66 116.93 33.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 259.93 5.77 203.86 3.86 3.78 5.09 40 E9a_E10a KnownJunction 0 0.00 53.15 6.18 30.27 30.56 131.46 78.61 56.68 107.35 40.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 277.36 3.76 189.39 5.44 7.90 4.10 41 ER10a ExonRegion 0 0.00 45.54 16.65 26.47 21.24 99.43 68.82 55.35 116.97 43.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 256.36 2.51 215.73 2.47 3.96 3.85 42 E10a_E11a KnownJunction 0 0.00 54.27 23.00 19.34 32.51 72.06 74.94 60.83 108.65 34.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 275.83 0.00 220.83 0.00 2.63 4.01 43 ER11a ExonRegion 0 2.68 62.95 17.30 28.97 27.58 142.63 110.73 52.81 102.67 42.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.59 1.00 185.51 0.00 2.40 3.86 44 E11a_E12a KnownJunction 0 13.04 71.17 16.91 37.36 56.20 82.23 102.72 32.41 97.28 29.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 189.23 4.24 159.09 0.00 3.12 3.84 45 ER12a ExonRegion 0 3.70 60.44 29.06 36.40 37.00 125.82 94.07 63.22 126.99 46.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 317.96 4.36 186.04 2.12 5.04 2.78 46 E12a_E13a KnownJunction 0 0.00 78.01 40.68 58.97 25.72 119.48 80.51 76.56 153.90 43.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 507.89 0.00 251.45 3.15 2.33 0.00 47 ER13a ExonRegion 0 3.16 56.84 22.39 31.19 27.05 122.29 69.91 45.53 118.59 38.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 413.20 2.91 226.80 1.85 4.66 0.88 48 E13_Da KnownBoundary 0 2.82 6.18 0.00 6.99 7.30 5.17 18.81 5.09 4.77 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.42 0.00 36.24 0.00 0.00 0.00 49 E13a_E14a KnownJunction 0 0.00 64.53 15.08 22.97 3.14 132.82 64.57 9.98 99.59 21.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 273.76 0.00 166.31 0.00 0.00 0.00 50 ER13b ExonRegion 0 0.45 1.48 0.00 2.64 3.73 7.11 12.16 3.72 2.73 5.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 25.02 1.60 0.06 0.00 51 E13b_E14a KnownJunction 0 0.00 0.00 0.00 1.66 11.80 11.30 13.34 1.64 2.89 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.97 0.00 14.96 3.15 0.00 0.00 52 ER14a ExonRegion 0 3.41 68.48 15.80 27.37 39.59 173.54 100.19 25.68 114.64 34.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 307.52 3.06 222.97 3.51 3.15 1.86 53 E14_Da KnownBoundary 0 6.74 91.04 14.75 30.27 79.54 223.28 138.10 40.38 132.38 36.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 273.14 0.00 274.72 0.00 3.12 4.35 54 ER14b ExonRegion 0 3.19 89.75 16.64 29.11 38.65 138.94 76.36 32.93 134.66 36.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.71 2.01 216.15 3.13 1.00 7.21 55 E14b_E15a KnownJunction 0 0.00 110.57 20.67 34.09 25.30 85.52 75.61 27.77 162.32 47.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.84 0.00 187.85 3.03 2.63 4.35 56 ER15a ExonRegion 0 3.38 103.89 17.53 38.01 38.83 134.62 92.41 33.13 144.48 53.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 128.08 1.36 213.96 0.82 3.30 4.36 57 E15a_E16a KnownJunction 0 12.45 102.94 25.01 18.91 66.55 130.95 106.39 32.78 114.12 51.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87.38 0.00 187.66 0.00 3.00 4.35 58 ER16a ExonRegion 0 2.18 81.07 17.25 31.69 34.54 135.68 69.38 32.50 129.95 48.68 0.61 0.00 0.00 0.00 0.00 0.00 0.00 202.40 0.00 194.01 0.00 2.93 4.86 59 E16a_E17a KnownJunction 0 0.00 47.95 11.97 29.87 15.20 165.81 49.11 34.83 131.05 38.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 376.19 0.00 213.61 0.00 9.00 6.91 60 ER17a ExonRegion 0 1.55 41.00 8.45 22.60 24.52 146.68 67.25 45.71 120.37 45.18 0.25 0.00 0.00 0.00 0.00 0.00 0.00 324.48 0.73 190.13 1.88 2.84 6.18 61 E17a_E18a KnownJunction 0 6.74 37.10 1.36 8.92 25.64 98.92 74.90 33.06 120.25 43.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 207.35 4.80 197.12 0.00 0.00 12.98 62 Ix Intron 0 2.23 20.67 6.96 18.97 10.53 12.74 37.48 14.47 10.67 5.72 0.00 0.00 0.00 0.00 0.11 0.00 0.00 10.97 0.80 18.12 0.04 0.86 0.26 63 Ix_SR1 SilentIntronRegion 0 2.30 21.20 7.17 19.51 10.82 13.12 38.32 14.88 10.97 5.89 0.00 0.00 0.00 0.00 0.11 0.00 0.00 11.30 0.82 18.55 0.04 0.88 0.25 64 ER18a ExonRegion 0 3.37 70.37 8.29 19.45 43.96 192.83 107.85 55.13 134.52 47.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 169.93 2.52 191.64 1.95 5.12 2.63 65 E18a_E19a KnownJunction 0 0.00 88.27 4.44 7.36 44.23 228.45 100.34 56.72 117.82 34.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 219.33 0.00 178.33 5.87 0.00 3.67 66 Ix_SR3 SilentIntronRegion 0 1.21 10.33 3.60 16.86 5.72 2.77 11.40 10.34 9.62 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.79 0.18 10.45 0.14 0.56 0.56 67 Ix_AR2 ActiveIntronRegion 0 1.98 17.35 7.25 19.07 8.60 2.32 17.38 16.94 11.16 3.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.56 1.01 11.51 0.00 0.00 0.45 68 ER19a ExonRegion 0 1.78 60.57 4.51 16.37 34.05 138.82 86.66 50.90 113.49 36.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 262.58 2.82 178.63 3.26 2.94 0.95 69 E19a_E20a KnownJunction 0 0.00 79.39 6.39 13.62 41.09 165.36 95.74 57.38 150.92 43.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 219.62 0.00 241.42 2.41 5.51 0.00 70 ER20a ExonRegion 0 0.00 78.40 7.87 18.80 47.73 192.28 95.09 69.57 161.11 50.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 239.59 8.06 201.67 4.31 3.87 1.61 71 E20a_E21a KnownJunction 0 0.00 99.92 6.98 18.38 73.68 223.11 89.61 54.59 137.56 44.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 232.39 14.02 156.98 2.72 0.00 7.94 72 ER21a ExonRegion 0 1.51 88.58 9.43 29.98 63.16 219.31 116.68 89.95 190.23 52.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 168.75 6.32 192.14 1.91 1.83 4.35 73 E21a_E22a KnownJunction 0 3.78 104.78 6.36 48.68 67.32 168.37 117.43 132.75 235.59 64.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 197.03 4.80 209.39 2.90 0.00 11.87 74 ER22a ExonRegion 0 2.63 104.47 13.11 30.09 72.90 199.62 112.80 86.59 181.38 48.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 179.85 1.92 193.37 1.20 1.03 5.06 75 E22a_E23a KnownJunction 0 3.78 84.33 2.96 28.57 96.94 306.76 120.70 89.34 149.25 51.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 144.42 0.00 192.33 0.00 2.51 8.02 76 ER23a ExonRegion 0 4.43 87.63 12.11 20.52 70.14 239.23 102.99 81.91 163.25 57.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 177.40 4.03 213.50 1.36 1.79 4.38 77 E23a_E24a KnownJunction 0 3.33 70.25 12.65 24.11 89.47 235.26 116.19 58.08 120.80 64.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 107.41 0.00 231.06 3.15 0.00 3.24 78 E24_Aa NovelBoundary 0 0.00 16.25 19.46 8.69 12.56 5.79 22.88 22.80 6.28 5.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 8.44 0.00 0.00 0.00 79 ER24a ExonRegion 0 0.00 89.18 13.93 22.03 79.53 259.18 101.36 74.16 148.40 67.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 162.29 2.18 228.37 1.22 0.12 2.39 80 E24a_E25a KnownJunction 0 0.00 105.24 10.76 23.07 109.85 402.33 136.82 80.26 176.16 52.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 168.01 4.24 271.14 0.00 0.00 0.00 81 ER25a ExonRegion 0 3.14 76.61 10.18 27.49 76.94 238.45 105.34 70.34 146.47 58.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 127.12 3.85 181.64 0.00 1.77 2.51 82 E25a_E26a KnownJunction 0 0.00 120.83 7.66 34.59 70.63 240.71 142.16 61.32 147.74 61.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 122.91 0.00 196.48 0.00 2.82 4.01 83 Ix Intron 0 2.09 19.16 3.10 12.99 21.43 42.60 47.66 37.57 43.49 21.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.58 38.31 0.08 1.17 0.90 84 Ix_SR1 SilentIntronRegion 0 2.09 19.17 3.10 13.00 21.44 42.62 47.68 37.59 43.51 21.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.01 0.58 38.33 0.08 1.17 0.90 85 ER26a ExonRegion 0 29.49 161.58 13.33 32.48 117.17 358.67 196.20 101.42 215.46 85.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 175.03 3.58 167.60 0.00 1.79 0.98 86 E26a_E27a KnownJunction 0 2.89 136.49 9.49 20.54 80.14 284.44 182.17 132.38 208.30 80.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.70 4.42 128.41 0.00 0.00 4.10 87 E26a_E28a NovelJunction 0 16.00 36.64 10.76 22.61 15.70 75.70 22.96 25.96 86.25 27.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 311.23 3.76 146.11 0.00 3.12 3.33 88 ER27a ExonRegion 0 10.49 119.49 15.24 35.39 117.87 338.91 195.96 179.75 276.32 94.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.06 2.81 140.28 0.37 6.63 1.66 89 E27a_E28a KnownJunction 0 42.30 205.62 15.05 45.52 142.78 646.62 270.67 219.38 339.26 84.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.91 0.00 121.38 0.00 5.94 0.00 90 E28_Aa NovelBoundary 0 0.00 56.83 23.39 30.13 32.77 29.53 33.56 52.37 52.72 25.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.49 0.00 21.99 0.00 0.00 0.00 91 ER28a ExonRegion 0 22.37 200.92 50.68 75.51 149.53 510.98 209.66 219.76 370.62 129.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 380.96 7.00 285.75 3.05 4.72 3.89 92 E28_Da KnownBoundary 0 13.85 212.33 36.01 91.26 125.72 405.45 221.43 256.10 435.53 185.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.92 4.80 270.69 0.00 5.88 0.00 93 ER28b ExonRegion 0 23.58 245.97 54.93 120.33 270.48 608.15 250.65 305.81 364.45 157.46 0.06 0.41 0.48 0.37 1.24 0.13 0.00 104.39 3.24 164.31 0.35 5.30 0.90