Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATP5G3 Gene 0 59.66 89.62 147.69 94.19 66.28 92.34 70.48 86.38 70.24 84.39 277.78 111.52 36.79 201.48 292.70 142.37 199.56 68.20 77.49 88.79 86.75 115.79 60.68 2 284727 Transcript 0 24.20 44.65 48.16 40.67 34.85 34.48 31.33 27.02 30.79 33.28 20.52 62.24 16.26 18.91 17.37 15.20 17.18 8.78 23.37 24.30 8.54 30.44 16.89 3 497075 Transcript 0 81.81 59.26 110.70 64.70 53.15 58.46 53.37 51.44 34.93 38.81 75.43 88.13 43.42 59.53 70.65 28.10 29.95 16.29 18.24 24.34 10.50 120.44 17.57 4 409194 Transcript 0 19.71 6.12 6.39 1.90 0.00 17.77 11.22 2.55 1.42 0.00 31.48 0.00 0.00 29.20 33.75 40.59 43.20 9.49 12.24 5.82 5.19 20.08 20.32 5 472782 Transcript 0 5.94 2.52 6.79 2.33 9.65 10.61 15.91 4.64 4.44 3.20 8.93 12.68 7.05 9.72 5.68 4.72 7.83 0.94 3.92 2.71 0.50 8.06 4.63 6 392541 Transcript 0 6.99 3.62 6.37 3.54 13.43 23.73 8.14 10.09 6.28 8.84 13.56 0.00 1.14 8.21 12.61 11.58 7.90 14.47 12.50 4.86 7.77 7.01 6.25 7 ER1a ExonRegion 0 7.39 5.53 0.95 1.98 4.00 3.23 6.18 0.54 1.15 0.87 3.01 7.38 4.78 3.91 5.83 7.40 6.53 1.92 6.81 7.66 3.98 3.99 9.22 8 E1_Ab KnownBoundary 0 13.26 12.63 0.00 4.10 8.15 16.64 12.45 0.00 3.44 3.33 43.38 0.00 0.00 29.73 66.01 62.38 40.39 16.71 8.94 6.46 2.72 5.51 12.38 9 E1_Ac KnownBoundary 0 55.71 93.93 19.60 2.90 33.70 109.94 66.51 5.09 9.43 15.42 132.14 49.22 26.30 244.04 219.54 93.39 140.16 31.88 44.42 45.83 66.78 21.86 32.01 10 ER1b ExonRegion 1 70.55 102.09 23.85 8.09 68.32 207.59 93.12 16.48 9.14 16.97 173.70 6.64 15.32 383.51 284.90 173.57 224.02 80.69 62.01 49.79 86.68 32.50 71.26 11 E1_Ad NovelBoundary 1 230.04 351.85 1.60 23.04 69.02 343.44 415.66 0.00 0.00 0.00 238.74 5.85 0.00 657.37 611.54 206.61 381.11 11.28 100.24 178.01 315.13 70.85 113.19 12 ER1c ExonRegion 1 606.85 966.52 296.54 120.91 364.40 1471.17 676.71 150.75 129.26 186.44 1740.33 22.19 31.66 2344.47 2512.48 1463.59 2456.49 512.81 625.03 466.16 921.77 331.02 669.46 13 E1a_E1e KnownJunction 0 19.71 6.12 6.39 1.90 0.00 17.77 11.22 2.55 1.42 0.00 31.48 0.00 0.00 29.20 33.75 40.59 43.20 9.49 12.24 5.82 5.19 20.08 20.32 14 E1a_E1f KnownJunction 1 1488.49 2080.81 673.60 320.90 723.35 2663.47 1296.66 347.45 281.45 403.57 3186.39 49.67 36.20 2023.08 2912.67 2756.63 4472.74 1103.65 1116.83 866.91 1547.77 584.41 1253.73 15 ER1d ExonRegion 1 920.99 1425.54 419.60 189.25 508.77 1902.70 940.39 207.41 214.91 277.88 2555.84 44.53 29.48 2479.10 3116.36 2085.16 3494.71 733.56 898.27 680.54 1290.43 463.14 926.30 16 ER1e ExonRegion 0 6.99 3.62 6.37 3.54 13.43 23.73 8.14 10.09 6.28 8.84 13.56 0.00 1.14 8.21 12.61 11.58 7.90 14.47 12.50 4.86 7.77 7.01 6.25 17 E1_Ae KnownBoundary 0 0.00 0.00 7.30 6.19 0.00 0.00 1.90 5.09 4.69 16.44 26.80 0.00 0.00 10.95 8.90 0.00 21.60 0.00 0.00 9.78 12.23 0.00 3.67 18 E1_Af KnownBoundary 1 16.67 5.99 20.73 5.63 7.98 25.89 7.86 28.14 16.26 17.46 46.49 6.45 0.00 45.44 33.87 19.05 73.02 23.42 39.06 5.62 28.79 19.84 16.13 19 ER1f ExonRegion 1 73.21 95.94 48.44 22.13 36.67 139.91 68.77 35.69 31.53 42.44 221.94 4.33 2.21 179.61 214.69 167.14 302.13 62.71 88.82 52.69 109.41 52.58 79.98 20 ER1g ExonRegion 0 393.94 574.97 414.59 207.17 201.40 516.90 379.01 245.08 228.35 283.49 1282.94 313.36 146.19 625.93 1014.58 802.98 1491.71 502.59 382.19 321.64 599.85 219.37 301.50 21 E1b_E2a KnownJunction 1 265.23 318.43 658.97 281.05 170.80 188.75 186.01 373.49 300.32 375.74 2551.44 251.48 116.55 1017.96 969.78 310.60 3086.20 207.52 124.80 349.75 1256.68 144.27 126.08 22 I1_AR1 ActiveIntronRegion 0 2.12 0.00 3.68 2.73 0.00 1.83 6.84 0.00 2.26 0.00 1.93 4.33 21.89 4.87 0.00 5.45 0.00 1.85 0.00 0.00 0.00 2.08 0.00 23 ER2a ExonRegion 1 219.10 399.08 1086.80 561.09 315.24 342.38 306.64 558.78 448.22 545.90 3284.71 687.26 146.49 2679.20 3398.16 1651.51 3195.15 796.08 835.78 918.75 1274.32 752.51 697.87 24 E2_Da KnownBoundary 0 0.00 0.00 3.43 3.30 0.00 2.90 8.74 0.00 5.67 2.93 4.53 6.30 0.00 4.94 4.45 0.00 15.90 0.00 8.19 2.43 0.00 5.76 0.00 25 E2a_E3a KnownJunction 1 436.89 574.90 1474.64 961.68 540.66 403.35 419.77 777.00 607.37 708.46 2008.93 578.89 160.38 2340.06 5474.02 3544.97 1477.42 1454.85 1419.99 1107.24 781.61 1411.13 1479.43 26 ER2b ExonRegion 0 5.94 2.52 6.79 2.33 9.65 10.61 15.91 4.64 4.44 3.20 8.93 12.68 7.05 9.72 5.68 4.72 7.83 0.94 3.92 2.71 0.50 8.06 4.63 27 I2 Intron 0 9.42 6.96 3.13 2.78 8.24 8.16 17.22 0.88 1.89 2.34 3.97 16.21 1.61 9.80 9.35 1.02 5.65 0.00 0.00 0.73 0.75 3.57 0.00 28 I2_AR1 ActiveIntronRegion 0 9.48 7.01 3.15 2.80 8.30 8.21 17.34 0.89 1.90 2.36 4.00 16.29 1.62 9.87 9.41 1.02 5.69 0.00 0.00 0.73 0.76 3.59 0.00 29 E3_Aa NovelBoundary 0 31.41 6.71 8.04 2.00 0.00 9.77 20.27 22.51 6.37 2.69 0.00 13.65 0.00 11.83 8.90 15.38 4.58 1.78 8.47 0.00 2.90 8.33 3.50 30 ER3a ExonRegion 0 340.56 753.15 1645.16 1031.80 677.34 1091.91 714.35 901.25 695.01 839.34 3465.32 928.72 232.86 2444.51 3944.66 1781.79 2101.43 906.01 831.15 994.28 1082.68 1249.10 620.16 31 E3_Da KnownBoundary 0 53.49 19.86 71.85 50.78 14.69 22.26 59.53 29.57 23.61 29.47 58.91 43.36 0.00 57.74 35.60 27.69 58.44 25.95 31.25 17.32 13.84 109.06 29.62 32 E3a_E3b KnownJunction 1 766.28 942.00 1731.46 1142.35 573.34 431.80 328.66 1047.55 775.14 932.14 3986.17 770.95 232.13 2402.27 4219.43 1404.16 2450.49 684.35 704.58 1110.75 1196.26 1185.11 427.58 33 ER3b ExonRegion 0 81.81 59.26 110.70 64.70 53.15 58.46 53.37 51.44 34.93 38.81 75.43 88.13 43.42 59.53 70.65 28.10 29.95 16.29 18.24 24.34 10.50 120.44 17.57 34 E3_Ab KnownBoundary 0 24.15 12.30 62.06 34.19 30.56 38.73 35.90 32.45 23.67 27.16 73.81 43.81 38.80 26.31 62.92 23.41 31.42 10.24 9.41 0.00 8.46 58.11 4.35 35 ER3c ExonRegion 0 376.30 447.98 1197.70 724.08 325.74 319.96 296.54 823.08 564.98 738.55 2619.06 755.47 312.13 1673.41 2604.06 1072.26 1405.33 420.49 503.74 689.97 555.58 1071.30 363.04 36 E3_Db KnownBoundary 0 611.22 578.91 978.47 448.49 315.96 455.82 432.84 730.30 394.93 519.19 845.00 293.50 337.48 571.37 1147.66 423.14 378.59 128.01 209.51 447.04 62.21 368.56 187.03 37 ER3d ExonRegion 0 308.86 311.09 442.51 215.24 186.65 285.89 241.61 325.62 193.34 257.49 495.15 373.71 230.84 513.10 861.11 237.48 224.06 70.39 137.67 274.93 42.95 215.11 107.01 38 E3_Dc KnownBoundary 1 17.56 63.15 67.09 73.78 35.40 91.48 47.61 50.81 60.97 61.49 43.91 181.56 46.59 70.22 46.48 15.55 62.09 4.15 40.00 63.60 16.49 64.72 31.33 39 ER3e ExonRegion 1 22.22 47.06 73.04 72.90 41.99 88.82 50.80 53.49 61.45 62.84 42.87 116.56 24.65 53.22 41.14 36.81 36.10 17.13 38.39 39.83 15.14 48.11 27.79 40 E3_Dd KnownBoundary 1 20.15 59.73 57.74 74.45 53.99 81.26 64.43 23.58 64.73 65.54 37.90 110.29 27.11 78.17 24.72 16.66 22.72 33.33 51.01 30.30 25.58 50.09 24.41 41 ER3f ExonRegion 1 41.01 83.77 95.36 79.36 65.70 65.72 56.47 53.50 60.44 65.69 38.03 117.09 27.74 33.91 28.90 23.00 27.84 15.65 39.93 40.94 13.09 56.90 24.55