Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HOXD10 Gene 0 16.47 74.23 75.87 10.43 0.86 0.55 0.82 1.21 0.91 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.85 0.14 253.29 7.73 14.21 11.74 2 490088 Transcript 0 0.19 0.46 15.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 0.40 0.28 0.39 3 249501 Transcript 0 23.28 88.78 104.44 15.74 0.91 0.40 0.73 1.11 0.79 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.16 0.20 275.00 9.20 11.79 10.87 4 ER1a ExonRegion 0 0.38 0.91 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.79 0.56 0.79 5 E1_Da NovelBoundary 0 24.23 17.83 41.87 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 337.23 27.68 24.06 31.33 6 E1a_E3a KnownJunction 0 0.00 0.00 25.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.56 0.00 0.00 0.00 7 I1 Intron 0 11.63 10.77 16.28 0.05 0.04 0.07 0.06 0.38 0.31 0.18 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.10 0.02 227.85 7.32 12.87 15.81 8 I1_AR1 ActiveIntronRegion 0 6.62 3.01 4.36 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 197.19 6.75 9.39 15.78 9 I1_SR1 SilentIntronRegion 0 13.29 7.53 6.79 0.00 0.00 0.00 0.00 0.46 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 244.03 4.02 8.27 13.97 10 I1_AR2 ActiveIntronRegion 0 25.52 20.82 14.13 0.00 0.00 0.00 0.00 0.11 0.00 0.09 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.12 0.00 255.76 4.64 14.74 13.24 11 I1_SR2 SilentIntronRegion 0 7.69 5.75 16.28 0.25 0.00 0.00 0.00 0.14 0.20 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.30 0.00 181.17 9.82 8.46 11.24 12 I1_AR3 ActiveIntronRegion 0 0.00 2.03 10.11 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 138.12 6.43 2.60 2.94 13 I1_AR4 ActiveIntronRegion 0 0.00 4.25 7.35 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 152.42 3.21 0.00 4.27 14 I1_AR5 ActiveIntronRegion 0 5.61 6.60 11.95 0.07 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 229.13 8.51 9.72 23.04 15 I1_AR6 ActiveIntronRegion 0 2.47 18.98 14.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 258.86 6.61 20.14 29.37 16 I1_AR7 ActiveIntronRegion 0 4.23 14.09 16.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 261.09 2.99 29.32 24.54 17 I1_AR8 ActiveIntronRegion 0 7.62 11.59 20.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 287.45 1.98 30.00 18.21 18 I1_SR3 SilentIntronRegion 0 9.05 10.68 20.42 0.00 0.05 0.12 0.09 0.59 0.59 0.31 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.09 0.05 232.83 8.22 15.59 17.73 19 I1_AR9 ActiveIntronRegion 0 13.52 7.57 20.97 0.00 2.68 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 186.29 5.02 7.99 3.92 20 I1_AR10 ActiveIntronRegion 0 6.92 4.38 26.86 0.00 1.65 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.75 7.46 6.09 4.40 21 I1_AR11 ActiveIntronRegion 0 6.43 4.63 20.72 0.00 0.00 0.84 0.00 0.00 0.82 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 172.04 5.67 2.25 5.27 22 E2_Aa NovelBoundary 0 48.82 32.10 44.44 0.00 4.07 2.61 0.00 0.00 3.07 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 213.23 5.31 28.60 20.66 23 ER2a ExonRegion 0 26.04 108.50 91.68 11.17 1.82 0.79 1.47 2.22 1.59 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.79 0.39 410.66 12.84 17.71 17.89 24 E2_Da NovelBoundary 0 3.26 6.58 10.41 0.00 0.00 0.00 0.00 7.52 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 153.85 8.96 11.63 20.57 25 E2a_E3a KnownJunction 0 20.52 69.07 117.20 20.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.52 0.00 139.34 5.56 5.88 3.84 26 I2 Intron 0 8.27 13.03 24.84 2.14 0.84 0.50 0.21 1.61 1.22 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 198.15 7.32 8.79 12.74 27 I2_AR1 ActiveIntronRegion 0 5.47 10.97 19.04 1.02 0.37 0.73 0.17 1.70 1.12 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 177.51 6.45 7.60 10.35 28 I2_SR1 SilentIntronRegion 0 12.91 24.72 29.91 4.28 2.36 0.00 0.60 0.64 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 280.47 9.33 13.15 23.03 29 I2_AR2 ActiveIntronRegion 0 13.43 16.55 36.81 4.07 1.55 0.21 0.24 1.72 1.52 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 243.73 9.31 11.22 16.95 30 E3_Aa NovelBoundary 0 7.56 15.92 49.44 2.03 0.00 0.00 1.85 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 241.80 2.47 11.45 15.28 31 ER3a ExonRegion 0 17.73 87.75 103.86 15.80 0.55 0.66 0.75 1.07 0.85 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 263.66 7.44 19.14 12.90 32 IG15 Intergenic 0 14.24 15.23 19.76 4.97 0.49 0.34 0.69 1.58 1.91 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.39 159.45 7.54 9.81 12.48 33 IG15_SR1 SilentIntergenicRegion 0 12.23 12.24 11.96 3.38 0.24 0.17 0.48 1.00 1.45 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.16 182.91 6.32 11.37 11.39 34 IG15_AR1 ActiveIntergenicRegion 0 19.43 11.28 20.16 5.08 0.00 0.00 0.00 3.93 1.24 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 252.61 5.61 12.88 8.54 35 IG15_SR2 SilentIntergenicRegion 0 15.71 18.78 21.31 3.70 0.00 0.00 0.81 0.71 2.19 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 150.12 8.44 7.56 12.46 36 IG15_AR2 ActiveIntergenicRegion 0 5.82 18.11 28.40 3.64 1.23 0.00 2.72 0.93 0.69 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 199.84 9.32 10.86 18.86 37 IG15_AR3 ActiveIntergenicRegion 0 19.27 15.87 31.86 4.97 1.94 0.38 0.50 0.86 1.04 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 158.41 9.30 10.92 16.30 38 IG15_AR4 ActiveIntergenicRegion 0 19.30 28.35 37.34 4.81 0.00 0.00 0.00 0.00 2.25 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 131.04 1.94 13.60 15.55 39 IG15_AR5 ActiveIntergenicRegion 0 11.20 18.47 35.13 12.10 0.00 0.84 0.00 0.00 3.71 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 104.61 3.76 11.37 15.05 40 IG15_AR6 ActiveIntergenicRegion 0 14.82 9.88 30.81 14.99 0.00 1.83 1.32 0.00 4.94 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 130.70 6.61 10.42 19.30 41 IG15_SR3 SilentIntergenicRegion 0 13.11 14.39 18.24 8.86 0.43 1.06 0.82 4.54 3.06 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 127.91 7.64 8.49 10.08