Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MTX2 Gene 0 139.31 151.55 186.85 186.71 161.50 249.48 198.71 165.41 129.47 228.25 204.74 139.55 77.02 139.69 189.53 114.06 106.28 96.88 169.27 142.51 62.04 109.05 57.49 2 420864 Transcript 0 0.00 1.36 0.00 0.00 0.00 0.86 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.29 0.00 0.00 3 392529 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 249442 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 423461 Transcript 0 2.47 1.60 0.07 4.04 1.14 2.97 2.25 2.23 0.59 1.41 1.59 8.25 2.45 1.40 0.68 2.45 0.03 1.83 1.72 4.47 0.26 1.80 0.95 6 443241 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 7 452865 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 8 ER1a ExonRegion 0 0.00 1.36 0.00 0.00 0.00 0.86 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.29 0.00 0.00 9 ER1b ExonRegion 0 0.00 2.03 0.00 0.00 0.00 3.67 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.20 0.00 0.00 10 ER1c ExonRegion 0 5.74 8.77 4.31 1.13 0.99 27.56 9.95 0.59 0.88 2.79 12.43 0.00 0.00 8.77 7.87 6.03 1.79 0.05 9.56 5.29 3.97 5.95 8.05 11 E1_Ad KnownBoundary 0 10.37 21.51 0.00 1.80 0.00 35.43 21.46 0.00 0.00 0.00 19.85 0.00 0.00 10.77 4.45 8.20 0.00 1.95 8.38 6.14 2.97 9.37 20.06 12 E1_Ae KnownBoundary 1 78.83 65.98 12.21 5.99 58.57 388.36 181.86 2.30 6.51 12.28 88.39 0.00 0.00 62.92 130.54 124.41 71.25 16.91 135.91 73.38 34.41 28.29 53.18 13 ER1d ExonRegion 1 49.87 65.96 33.70 20.19 44.99 296.16 127.18 22.15 9.11 34.77 93.02 0.00 0.00 56.24 97.55 101.98 63.13 52.08 110.89 56.25 21.35 32.16 51.39 14 E1_Af KnownBoundary 1 178.85 219.30 107.15 80.28 185.48 866.72 392.96 92.62 42.10 144.46 231.58 0.00 0.00 162.87 159.96 215.67 214.96 293.20 359.45 141.26 112.06 74.58 103.29 15 ER1e ExonRegion 1 124.61 162.56 73.56 47.40 126.60 735.87 326.19 54.72 26.01 91.75 230.14 0.00 0.00 160.18 206.17 233.96 177.32 131.94 293.05 133.31 84.02 68.56 97.09 16 ER1f ExonRegion 1 29.04 40.56 58.79 37.71 29.66 114.37 76.25 32.82 30.92 92.35 129.01 3.97 6.07 81.40 76.25 70.30 93.67 78.94 122.02 63.17 69.38 38.55 30.79 17 E1a_E2a KnownJunction 0 3.04 0.00 9.93 4.79 0.00 2.90 0.00 0.00 1.79 2.44 18.00 0.00 0.00 22.43 15.08 27.17 0.00 6.01 14.02 3.26 0.00 8.94 3.24 18 E1a_E3a KnownJunction 1 46.75 64.66 114.43 77.41 33.02 93.07 34.45 101.49 68.75 174.04 150.46 5.55 12.01 247.69 264.17 251.90 110.14 159.18 475.97 186.96 70.43 143.29 110.12 19 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 20 ER2a ExonRegion 0 12.35 7.83 14.04 5.36 9.78 25.91 26.10 9.63 13.02 12.42 19.40 8.60 12.25 15.01 19.43 17.31 4.39 11.16 11.43 11.39 5.90 8.29 3.22 21 E2a_E3a KnownJunction 0 24.75 11.18 19.63 10.39 17.23 19.08 17.18 21.85 17.13 19.02 20.01 0.00 12.66 16.89 13.35 24.35 8.42 12.56 4.42 8.88 9.20 14.76 3.84 22 ER3a ExonRegion 1 43.26 88.38 152.99 125.07 76.09 106.70 77.64 117.79 100.97 196.65 211.77 66.39 47.19 200.34 249.33 274.12 93.80 273.35 352.65 168.22 65.70 126.10 92.99 23 E3a_E4a KnownJunction 0 66.75 116.30 151.89 146.60 118.93 137.70 147.95 120.63 98.52 184.49 203.63 85.23 97.72 118.67 223.25 208.07 96.87 256.72 245.28 195.52 54.98 126.20 77.00 24 ER4a ExonRegion 0 107.31 125.65 170.20 148.64 145.40 303.40 148.93 130.41 114.73 201.49 250.08 198.14 131.72 134.01 192.41 134.82 112.79 226.17 179.53 173.56 64.14 85.56 59.42 25 E4a_E5a KnownJunction 0 0.00 2.83 0.00 1.53 0.00 8.63 0.00 2.38 0.00 0.00 2.47 5.85 0.00 0.00 0.00 0.00 0.00 0.00 4.80 3.26 0.00 3.12 0.00 26 E4a_E6a KnownJunction 0 151.43 151.82 156.94 123.66 227.42 467.34 221.79 118.25 110.53 183.60 258.49 208.42 127.59 145.86 237.35 95.87 110.99 118.18 110.03 158.71 85.07 77.89 35.94 27 E4a_E7a NovelJunction 0 3.63 11.38 22.38 13.02 11.12 31.69 12.23 4.35 6.66 22.40 2.26 12.60 0.00 2.35 0.00 8.54 0.00 7.25 3.58 5.62 0.00 3.12 4.18 28 ER5a ExonRegion 0 6.55 3.56 0.26 8.69 4.56 3.24 8.98 4.54 2.35 4.12 3.87 27.15 9.79 3.50 2.72 6.23 0.11 4.85 2.09 11.42 1.02 4.07 3.78 29 E5a_E6a KnownJunction 0 3.33 0.00 0.00 5.93 0.00 0.00 0.00 2.01 0.00 1.53 0.00 0.00 0.00 2.12 0.00 3.59 0.00 2.49 0.00 3.20 0.00 0.00 0.00 30 I5 Intron 0 11.43 10.48 6.65 16.69 13.39 6.82 24.58 9.89 9.24 12.32 5.31 22.33 21.14 5.48 5.92 8.59 5.70 5.62 5.57 13.41 2.80 8.54 4.15 31 I5_SR1 SilentIntronRegion 0 3.17 2.89 3.69 8.58 4.90 2.61 17.26 5.39 4.10 6.33 2.60 18.96 16.41 3.55 3.26 5.17 3.89 3.51 3.69 12.22 1.69 1.71 2.69 32 I5_AR1 ActiveIntronRegion 1 8.88 10.10 3.90 20.95 6.64 4.02 28.86 12.93 11.19 17.56 3.78 39.39 22.92 4.40 4.83 9.05 5.29 6.43 6.34 17.36 2.69 5.63 5.34 33 I5_SR2 SilentIntronRegion 0 12.48 13.08 8.38 19.71 17.74 8.64 28.22 12.91 11.79 15.25 7.53 22.21 22.56 6.93 6.96 11.52 7.49 7.34 7.67 14.08 4.02 12.54 5.11 34 I5_AR2 ActiveIntronRegion 0 28.00 27.39 12.35 37.91 29.45 16.91 32.25 10.28 17.93 20.03 5.92 34.19 29.48 8.10 14.50 7.85 2.54 6.01 1.87 13.44 1.66 18.13 6.77 35 I5_SR3 SilentIntronRegion 0 68.73 38.14 13.46 32.38 38.99 19.86 43.99 17.91 19.35 24.27 9.01 21.02 41.37 6.60 11.46 10.78 8.86 6.13 4.89 13.18 1.82 24.53 3.14 36 E6_Aa NovelBoundary 0 91.42 40.32 33.26 43.32 47.71 38.22 59.40 29.70 18.40 24.26 12.06 30.61 27.60 9.65 10.26 7.95 8.79 2.11 7.25 14.51 0.00 9.19 18.27 37 ER6a ExonRegion 0 189.50 197.59 196.71 177.38 257.09 720.03 398.22 164.51 159.18 259.61 294.30 139.31 106.33 225.29 200.62 106.14 188.65 102.59 118.38 187.32 86.97 136.51 40.39 38 E6a_E7a KnownJunction 0 286.50 353.36 197.57 232.97 288.03 628.67 516.00 166.19 167.56 294.54 339.35 147.05 134.41 288.42 277.27 115.01 224.03 104.71 151.44 223.90 75.31 154.12 36.62 39 ER7a ExonRegion 0 331.99 395.28 300.92 282.95 275.67 436.30 381.77 227.35 204.56 353.25 407.94 243.01 140.21 237.40 320.68 169.45 199.77 125.00 248.58 242.14 106.52 168.95 78.30 40 E7a_E8a KnownJunction 0 416.00 367.24 381.92 286.94 243.29 454.74 340.67 251.66 216.11 390.22 332.24 242.33 111.84 221.67 310.65 159.87 214.40 139.49 255.82 284.50 155.74 139.55 111.31 41 ER8a ExonRegion 0 284.73 296.88 343.47 311.15 310.93 446.17 356.71 241.46 223.09 393.36 416.05 279.04 136.97 279.09 314.24 216.39 215.34 182.09 269.25 258.89 119.21 174.05 116.42 42 E8a_E9a KnownJunction 0 266.86 331.78 331.66 317.48 351.27 410.79 384.88 246.69 186.17 346.81 377.15 292.00 113.95 271.29 355.15 266.34 188.13 180.65 294.13 267.75 147.52 179.05 91.77 43 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER9a ExonRegion 0 204.24 297.92 373.13 357.76 306.37 363.09 352.17 303.34 234.67 414.03 429.10 316.05 128.98 291.53 329.29 239.26 193.10 231.89 313.76 258.51 136.63 178.14 99.85 45 ER9b ExonRegion 0 228.64 318.34 370.72 363.37 294.33 398.58 341.12 302.34 237.94 411.34 413.38 315.58 115.86 287.12 337.64 242.11 192.34 251.59 341.44 246.69 151.76 163.30 123.74 46 E9a_E10a KnownJunction 0 316.50 356.12 336.86 356.73 330.22 428.56 419.81 281.03 225.00 359.90 437.32 260.03 133.60 290.54 429.69 233.10 205.98 230.81 413.19 254.65 137.52 200.48 145.71 47 E9a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 48 ER10a ExonRegion 0 232.31 283.65 369.81 368.59 263.15 445.99 402.62 302.24 254.14 421.15 444.43 321.57 178.06 302.76 342.35 286.76 201.58 265.57 393.23 253.41 160.79 205.55 152.60 49 ER10b ExonRegion 0 240.66 278.50 369.64 348.70 427.92 565.84 458.96 270.90 250.94 420.91 444.38 287.65 187.37 316.35 361.95 324.98 233.64 242.24 420.62 294.45 157.75 222.28 144.25 50 E10_Ab KnownBoundary 0 324.58 325.27 419.74 366.02 601.36 762.17 593.59 279.55 265.30 462.43 439.53 344.81 151.45 312.14 437.85 282.15 252.83 221.61 397.94 307.19 147.46 222.34 142.13 51 ER10c ExonRegion 0 301.30 338.30 349.62 394.70 465.20 585.21 485.66 308.10 260.94 454.67 437.91 313.73 153.85 306.06 432.29 238.83 255.64 209.52 446.41 279.90 154.14 195.18 157.27 52 E10b_E11a KnownJunction 0 350.14 326.85 393.48 498.84 353.57 460.76 510.83 363.59 267.85 457.46 383.47 418.19 176.29 271.88 432.91 248.57 212.34 206.65 538.37 300.22 129.05 226.99 156.04 53 ER11a ExonRegion 0 229.33 322.68 444.41 464.76 307.15 433.75 391.08 345.83 260.53 442.66 396.70 323.02 119.50 313.48 409.83 238.39 220.17 218.51 371.69 319.70 143.01 210.35 140.20 54 E11a_E12a KnownJunction 0 284.79 213.05 496.64 460.41 281.41 334.13 406.43 331.06 274.91 455.28 388.26 237.38 123.21 245.57 443.79 213.36 267.04 269.45 339.59 257.20 126.33 250.87 114.39 55 I11_SR1 SilentIntronRegion 0 0.00 4.52 0.47 2.78 2.52 3.30 11.78 4.19 4.09 3.95 2.48 13.21 23.84 3.84 0.60 3.81 3.67 2.28 1.64 4.55 1.31 6.06 1.26 56 I11_AR1 ActiveIntronRegion 0 1.77 5.65 1.42 4.85 5.05 7.11 14.26 6.56 8.93 6.18 7.78 16.35 20.49 5.68 1.37 4.26 5.29 3.10 1.04 8.29 1.44 6.03 0.72 57 I11_AR2 ActiveIntronRegion 0 4.23 4.41 1.84 2.73 0.00 5.50 11.03 5.19 15.44 10.32 10.63 8.66 42.21 10.02 0.00 8.92 3.30 0.00 0.00 13.12 4.41 4.17 0.00 58 I11_AR3 ActiveIntronRegion 0 4.23 4.07 3.68 3.63 0.00 6.72 9.27 5.19 16.26 10.32 11.60 8.66 42.21 11.37 0.00 8.92 3.30 0.00 0.00 13.48 4.41 4.17 0.00 59 I11_AR4 ActiveIntronRegion 1 4.23 4.07 3.68 3.07 0.67 6.19 10.59 5.19 16.98 10.32 11.60 4.87 39.87 10.96 0.00 8.92 3.30 1.62 0.80 12.23 2.20 7.81 0.00 60 I11_AR7 ActiveIntronRegion 0 0.00 2.61 6.13 3.12 5.35 0.00 11.35 2.47 13.41 12.62 7.73 20.41 28.14 11.14 0.00 8.92 6.60 5.54 6.37 14.59 2.20 10.42 0.00 61 I11_AR8 ActiveIntronRegion 0 0.00 4.07 6.54 4.09 3.12 1.53 14.34 5.19 12.97 10.13 5.80 25.98 35.18 7.58 0.00 7.93 4.95 5.54 3.72 13.83 4.04 6.25 0.00 62 E12_Aa NovelBoundary 0 97.72 17.43 99.14 52.97 63.16 21.01 47.47 43.21 28.85 23.45 8.00 12.60 0.00 9.65 24.23 4.19 8.88 20.27 4.42 14.83 17.54 11.76 0.00 63 ER12a ExonRegion 0 368.17 314.23 455.41 450.77 344.49 403.48 391.72 407.73 280.03 488.74 433.77 278.50 141.58 267.49 426.32 223.10 215.35 155.72 372.48 308.74 108.99 235.38 124.62 64 E12_Da KnownBoundary 0 326.72 267.58 385.11 353.63 581.41 505.90 372.73 382.36 234.17 413.38 311.66 234.08 189.11 250.75 413.01 156.45 163.91 113.13 220.81 240.26 76.73 186.58 77.00 65 ER12b ExonRegion 0 197.14 219.83 342.90 335.19 384.43 402.84 339.77 362.09 248.31 431.35 290.29 229.82 154.10 185.41 358.22 128.77 139.51 90.43 177.15 216.07 68.72 210.35 66.04 66 E12_Db KnownBoundary 0 167.73 259.43 291.92 323.00 329.63 283.47 407.09 357.88 236.92 411.66 248.54 229.72 143.01 194.89 401.39 125.95 104.16 52.52 142.22 221.79 49.48 233.97 57.96 67 ER12c ExonRegion 1 94.65 93.67 135.03 168.28 95.39 98.93 101.59 176.06 123.25 216.71 76.61 118.90 73.98 56.95 117.17 29.50 27.48 16.10 65.08 86.73 10.28 101.89 17.47 68 ER12d ExonRegion 0 0.00 3.05 0.00 0.00 0.00 0.92 1.32 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00