Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLEKHA3 Gene 0 32.17 43.64 55.81 52.10 47.59 70.45 65.02 43.99 61.05 51.19 50.26 67.15 68.32 41.22 41.04 38.37 35.60 20.71 28.90 32.62 26.20 95.49 45.46 2 234453 Transcript 0 44.07 55.36 56.09 53.77 46.34 84.43 67.36 41.33 75.51 55.52 62.48 76.84 98.25 47.36 38.75 56.61 62.70 29.57 52.93 36.58 47.70 94.40 59.99 3 453653 Transcript 0 14.04 1.78 5.77 8.54 8.15 8.30 8.71 12.58 9.66 23.17 24.30 22.13 18.72 30.63 17.63 23.76 6.95 2.71 0.02 6.07 5.63 1.42 3.34 4 461474 Transcript 0 3.66 2.20 1.20 0.88 1.76 0.79 5.13 2.20 0.80 0.37 0.42 0.00 0.83 0.29 0.52 0.00 0.71 0.00 0.03 0.44 0.48 0.45 0.63 5 421187 Transcript 0 1.22 0.45 0.21 1.17 0.31 0.63 1.22 1.18 0.63 0.01 0.00 1.23 0.44 0.13 0.00 0.00 0.38 0.21 0.37 0.02 0.00 0.24 0.36 6 ER1a ExonRegion 1 2.32 2.51 7.03 5.38 3.59 13.69 5.31 4.38 11.78 11.88 35.21 1.37 10.51 19.97 11.49 55.67 36.93 17.04 64.79 14.01 45.04 35.91 54.77 7 E1_Ab KnownBoundary 0 3.33 9.54 11.15 9.82 8.57 24.99 8.66 2.30 20.05 10.15 14.42 0.00 19.32 41.79 22.99 47.51 20.85 43.40 32.94 26.33 23.60 55.97 63.60 8 ER1b ExonRegion 1 7.23 11.98 13.09 7.63 11.65 46.80 22.74 15.58 22.25 17.34 30.26 2.16 29.95 42.53 20.59 17.82 25.39 18.55 18.93 20.95 32.18 30.33 26.23 9 E1a_E3a KnownJunction 1 43.79 26.77 38.29 19.31 57.89 65.53 74.99 51.55 58.10 39.00 66.44 32.71 133.11 68.40 47.10 31.87 55.54 31.50 30.59 34.58 51.40 60.19 45.67 10 ER2a ExonRegion 0 7.32 4.39 2.40 1.76 3.51 1.59 10.26 4.39 1.60 0.74 0.84 0.00 1.67 0.58 1.03 0.00 1.43 0.00 0.05 0.88 0.95 0.90 1.27 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 0 44.56 46.30 38.86 40.75 63.30 67.43 59.82 51.53 76.87 61.88 74.31 48.22 85.34 93.96 51.73 65.21 46.95 48.78 38.36 46.37 58.24 88.99 66.54 13 E3a_E4a KnownJunction 0 28.45 0.00 5.17 5.83 4.24 8.57 17.18 15.40 9.95 23.21 21.69 12.60 0.00 33.55 16.32 15.38 3.65 5.14 0.00 9.78 9.08 0.00 0.00 14 E3a_E5a KnownJunction 0 61.34 40.52 57.92 85.97 40.49 94.15 79.98 61.16 87.67 62.43 121.35 104.73 96.10 99.65 40.30 75.54 59.65 67.32 47.91 54.59 87.23 155.23 91.42 15 E4_Aa NovelBoundary 0 0.00 2.70 6.98 1.83 23.77 0.00 12.76 6.12 3.12 6.74 0.00 0.00 0.00 0.00 4.45 6.92 0.00 0.00 0.00 3.26 0.00 0.00 0.00 16 ER4a ExonRegion 0 10.85 2.51 5.58 8.41 7.23 7.92 7.27 12.25 8.80 22.84 23.73 15.66 27.44 34.90 17.41 18.40 8.78 2.99 0.07 5.93 5.53 1.99 2.00 17 E4a_E5a KnownJunction 0 2.82 2.83 6.56 11.39 12.99 8.40 1.68 10.10 10.21 23.45 27.48 38.11 28.73 23.43 19.16 37.51 8.42 0.00 0.00 2.49 2.29 2.27 8.02 18 ER5a ExonRegion 0 39.85 49.48 100.19 92.57 52.31 111.10 74.66 64.04 107.61 79.89 121.41 101.55 116.05 99.11 60.46 83.87 59.90 54.37 46.00 51.57 71.27 153.74 104.97 19 E5a_E6a KnownJunction 1 57.12 60.32 122.59 146.30 159.85 190.46 186.50 90.69 142.21 88.67 175.25 62.12 238.13 147.51 116.08 135.69 82.75 48.67 58.83 61.10 74.81 226.26 176.70 20 ER6a ExonRegion 0 28.26 58.99 100.24 103.80 83.91 158.00 122.62 67.90 120.97 81.82 143.63 177.07 177.30 95.28 68.34 114.26 93.68 81.13 68.33 65.15 54.92 211.87 120.36 21 E6_Da NovelBoundary 0 0.00 2.43 6.12 2.06 4.33 2.16 26.63 8.01 5.41 3.33 1.95 0.00 6.01 0.00 0.00 4.02 25.99 0.00 9.60 0.00 3.15 6.18 0.00 22 E6a_E7a KnownJunction 0 36.90 91.30 82.43 99.82 62.22 143.27 105.50 81.53 138.54 92.49 142.77 175.11 160.05 82.47 84.06 93.31 112.95 71.55 64.66 76.57 52.57 208.19 125.31 23 I6_SR1 SilentIntronRegion 0 3.58 2.24 10.34 4.43 5.70 6.83 14.23 6.15 9.61 4.28 6.09 11.14 7.71 7.52 3.48 8.51 14.27 1.55 6.53 1.54 6.25 3.66 3.05 24 I6_AR1 ActiveIntronRegion 1 9.26 0.00 9.19 3.41 8.70 12.84 18.37 5.19 8.18 5.73 11.60 15.15 14.66 5.08 2.90 5.94 27.64 1.85 12.74 2.13 6.61 6.77 5.87 25 E7_Aa NovelBoundary 0 12.67 15.66 8.46 6.23 0.00 7.55 13.56 13.51 1.79 6.96 12.79 15.15 0.00 2.47 4.45 8.72 13.18 6.63 0.00 6.07 2.66 11.76 0.00 26 ER7a ExonRegion 0 40.51 85.07 109.04 91.11 57.77 122.67 85.59 74.62 133.31 94.09 145.82 147.35 271.04 103.36 85.57 128.50 132.95 72.38 83.04 83.96 104.23 222.47 138.48 27 E7_Da KnownBoundary 0 33.19 86.76 55.53 48.71 31.83 73.48 52.95 44.40 74.02 41.45 53.86 111.34 158.92 43.44 51.18 74.68 92.47 16.00 42.64 55.93 91.99 83.22 58.39 28 E7a_E7b NovelJunction 0 0.00 0.00 21.73 22.11 0.00 0.00 0.00 15.03 33.36 27.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.73 0.00 0.00 0.00 0.00 0.00 29 E7_Ab KnownBoundary 0 42.45 40.91 58.19 62.16 69.52 68.65 37.14 30.48 69.13 55.04 73.49 56.42 28.73 37.02 31.52 78.44 59.47 51.73 54.12 20.71 27.61 91.85 45.41 30 ER7b ExonRegion 0 61.38 100.32 107.56 98.58 64.22 120.22 79.58 66.83 145.74 96.98 121.77 166.44 209.49 77.96 64.15 111.95 127.27 65.90 78.93 63.59 117.78 142.61 77.66 31 ER7c ExonRegion 0 91.99 112.44 80.64 82.17 84.38 202.39 106.18 54.55 113.21 84.62 137.47 141.08 116.34 89.80 54.13 112.00 128.65 72.24 84.53 64.50 111.10 185.18 124.48 32 E7b_E8a KnownJunction 0 151.58 172.34 68.95 77.35 101.10 286.09 149.09 45.26 103.91 76.50 147.14 141.65 165.74 128.79 91.97 134.41 133.05 78.80 94.97 86.99 124.67 220.38 173.80 33 ER8a ExonRegion 0 75.57 97.94 63.00 57.12 56.68 132.20 106.37 36.06 79.10 61.54 86.94 162.45 129.30 90.10 63.96 100.58 76.45 45.40 48.65 40.38 88.00 136.33 101.11 34 E8a_E9a KnownJunction 1 66.75 95.97 83.82 55.44 83.28 60.42 109.74 39.14 73.81 59.20 58.44 62.12 99.99 66.04 46.60 110.40 29.45 24.21 36.71 16.75 59.80 128.28 64.45 35 ER9a ExonRegion 0 59.12 81.80 71.99 51.91 51.95 108.37 95.27 43.42 76.07 54.19 56.75 116.11 140.74 68.70 57.37 56.52 54.24 20.83 48.08 61.57 35.85 114.47 60.00 36 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E9a_E11a KnownJunction 0 76.01 73.47 45.36 50.54 59.68 139.12 110.89 40.13 80.73 55.58 61.96 74.42 123.04 68.40 38.45 41.95 70.03 27.98 54.40 41.29 21.75 103.48 82.12 38 ER10a ExonRegion 0 3.65 1.36 0.63 3.51 0.92 1.90 3.65 3.55 1.89 0.02 0.00 3.69 1.33 0.40 0.00 0.00 1.14 0.64 1.10 0.07 0.00 0.72 1.09 39 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E11_Aa NovelBoundary 0 0.00 9.93 9.58 19.38 8.15 2.27 4.06 2.22 5.90 1.53 2.53 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 41 ER11a ExonRegion 0 49.44 88.19 77.71 77.69 78.83 128.03 120.15 56.88 77.01 74.67 74.25 118.22 96.08 63.73 74.57 42.52 63.86 20.55 35.70 52.06 16.07 143.97 57.83 42 E11_Da KnownBoundary 0 85.72 151.55 78.86 79.44 150.51 112.38 127.59 75.54 76.47 89.48 63.54 125.89 87.33 58.51 77.38 35.46 36.28 5.72 27.11 31.70 16.43 168.45 63.17 43 ER11b ExonRegion 0 36.57 45.13 64.40 60.56 57.86 64.68 73.66 53.99 63.80 57.66 30.98 65.11 49.98 23.13 40.90 16.87 16.57 7.37 13.59 27.41 6.25 95.59 25.43 44 IG39 Intergenic 0 9.03 17.05 9.70 17.77 15.04 10.62 20.18 17.57 18.93 13.26 1.32 3.67 4.43 1.06 3.89 3.35 2.27 3.26 4.65 7.46 1.36 5.31 6.31 45 IG39_AR2 ActiveIntergenicRegion 0 2.08 38.32 4.83 8.02 9.20 3.52 15.76 18.47 18.45 13.29 1.17 10.02 5.60 1.68 3.01 1.50 2.67 0.56 1.61 8.68 1.06 3.83 3.31 46 IG39_SR2 SilentIntergenicRegion 0 6.08 14.86 8.23 12.34 10.57 4.40 22.29 25.29 26.77 17.99 0.83 3.55 8.22 1.13 3.72 6.78 2.84 3.69 4.23 12.25 1.76 2.83 8.53 47 IG39_AR3 ActiveIntergenicRegion 0 6.65 8.13 8.58 17.33 9.94 19.25 29.98 12.72 24.08 12.78 0.00 4.64 4.69 0.70 2.90 5.94 0.00 5.54 3.19 11.40 2.20 6.99 10.70 48 IG39_AR4 ActiveIntergenicRegion 0 6.46 9.53 6.82 15.79 14.54 10.16 26.29 15.35 25.57 18.57 1.05 8.41 8.17 0.93 3.91 5.00 3.87 4.13 4.19 10.53 1.72 3.49 11.74 49 IG39_SR3 SilentIntergenicRegion 0 9.93 19.28 11.15 19.62 15.85 13.21 35.24 24.30 30.62 19.71 2.64 5.37 7.15 1.34 5.65 4.06 2.71 6.12 8.57 10.38 2.81 7.79 11.11 50 IG39_AR5 ActiveIntergenicRegion 0 11.88 30.22 13.36 25.40 18.81 17.36 31.07 21.71 29.79 18.60 3.42 5.27 3.62 1.58 5.54 6.11 5.84 12.06 7.35 11.56 3.49 6.22 11.87 51 IG39_SR4 SilentIntergenicRegion 0 11.75 39.61 8.19 21.33 25.43 19.78 33.88 22.59 27.93 18.30 3.62 5.71 1.90 2.99 5.72 5.44 1.62 6.70 7.24 9.40 6.46 8.06 19.57 52 IG39_AR6 ActiveIntergenicRegion 0 14.23 20.56 15.04 32.06 29.58 20.93 33.82 19.05 29.23 19.62 2.90 2.13 4.89 0.91 5.67 7.93 5.77 4.79 7.25 9.00 2.02 9.86 12.75 53 IG39_AR7 ActiveIntergenicRegion 0 27.99 24.85 18.11 38.31 38.06 39.53 51.63 25.93 42.82 28.93 5.80 0.00 0.00 0.00 6.77 5.94 3.30 9.03 0.00 9.22 0.00 5.32 1.31 54 IG39_SR5 SilentIntergenicRegion 0 24.32 33.58 17.13 40.72 34.97 33.73 45.55 37.52 36.55 23.00 1.56 3.83 2.91 2.22 10.97 4.59 4.04 8.11 12.57 10.91 2.75 10.59 10.41 55 IG39_AR8 ActiveIntergenicRegion 0 24.14 30.99 28.36 50.62 44.16 31.93 35.76 36.54 29.55 19.70 2.40 6.21 6.85 2.19 5.15 2.14 2.05 3.36 12.66 11.98 1.37 17.58 9.96 56 IG39_SR6 SilentIntergenicRegion 0 19.46 29.35 29.05 53.81 52.53 32.59 29.34 35.30 26.90 27.06 2.58 2.62 4.02 2.15 8.28 4.41 1.50 2.79 6.70 7.57 0.50 17.86 5.79 57 IG39_AR9 ActiveIntergenicRegion 0 16.63 36.89 63.89 105.33 94.42 33.53 55.42 48.64 45.70 56.03 0.28 6.18 9.38 3.25 0.41 5.10 0.00 3.70 6.37 6.38 0.00 23.81 8.81 58 IG39_AR10 ActiveIntergenicRegion 0 28.93 41.35 68.21 104.03 91.42 49.82 59.80 48.40 47.14 51.42 0.00 12.99 6.25 3.25 2.90 8.42 2.20 3.70 8.49 7.80 1.10 32.64 7.83 59 IG39_AR11 ActiveIntergenicRegion 0 38.63 40.67 68.47 100.34 85.96 50.89 56.60 49.04 45.08 51.18 0.00 12.99 4.69 3.05 2.90 8.17 3.30 3.70 7.17 6.38 2.20 26.56 8.81 60 IG39_AR12 ActiveIntergenicRegion 0 37.79 39.22 64.77 101.44 65.75 44.01 46.72 48.89 48.88 50.14 0.00 12.99 4.69 3.25 2.90 5.94 3.30 3.96 6.37 6.38 2.20 22.32 8.81 61 IG39_AR13 ActiveIntergenicRegion 0 45.15 40.22 63.72 110.70 49.06 39.12 33.98 51.28 49.68 50.34 0.00 11.55 4.69 2.71 5.48 5.94 3.30 5.54 6.37 7.09 2.20 21.76 8.81 62 IG39_AR14 ActiveIntergenicRegion 0 50.62 46.26 63.72 114.37 31.44 49.51 31.22 53.15 50.64 49.22 1.61 5.41 8.99 1.62 4.84 8.17 3.30 2.93 4.51 5.67 2.20 21.88 7.83 63 IG39_AR15 ActiveIntergenicRegion 0 42.83 38.04 47.93 88.51 27.70 55.66 32.63 51.14 46.14 40.95 2.16 0.25 4.69 0.48 11.61 3.67 0.97 1.85 0.94 7.01 0.78 16.55 1.55 64 IG39_AR16 ActiveIntergenicRegion 0 31.19 37.15 29.37 45.12 38.80 23.67 27.34 45.43 29.15 25.80 1.27 7.48 11.24 1.76 9.12 2.94 1.31 0.29 2.84 6.31 0.00 16.74 1.46