Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC093838.1 Gene 0 3.19 4.24 153.76 3.74 7.85 3.63 52.79 2.36 2.50 171.24 61.98 236.46 141.58 16.47 4.97 18.60 4.27 4.25 1.89 18.08 0.59 0.79 1.11 2 431979 Transcript 0 2.28 2.88 88.49 2.26 4.50 1.98 30.50 1.56 1.78 93.77 40.57 136.10 82.36 10.53 2.94 12.46 2.82 3.01 1.36 12.15 0.44 0.58 0.83 3 437608 Transcript 0 0.20 0.00 143.73 1.32 9.18 1.54 40.43 1.03 0.70 186.03 28.60 133.46 74.26 5.21 1.50 10.16 0.92 0.00 0.00 0.00 0.00 0.00 0.00 4 IG41 Intergenic 0 0.14 0.00 27.73 0.00 0.06 0.00 0.53 0.06 0.33 0.13 25.15 20.85 11.24 5.96 1.43 9.62 0.77 0.23 0.07 0.07 0.00 0.00 0.00 5 IG41_SR1 SilentIntergenicRegion 0 0.66 0.00 21.15 0.00 0.59 0.00 0.06 0.00 0.00 0.00 23.00 43.03 26.67 6.62 2.03 12.35 0.74 0.00 0.00 0.00 0.00 0.00 0.00 6 IG41_AR1 ActiveIntergenicRegion 0 6.35 0.00 34.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 52.91 121.23 63.90 4.06 5.80 23.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 IG41_AR2 ActiveIntergenicRegion 0 0.66 0.00 20.95 0.00 0.00 0.00 0.70 0.00 0.00 0.00 26.03 48.30 29.02 4.01 4.08 7.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 IG41_AR3 ActiveIntergenicRegion 0 0.28 0.00 16.56 0.00 0.36 0.00 2.13 0.00 0.24 0.00 22.83 65.34 27.66 2.59 1.63 6.35 0.85 0.00 0.00 0.00 0.00 0.00 0.00 9 IG41_AR4 ActiveIntergenicRegion 0 0.00 0.00 18.38 0.00 0.00 0.00 9.05 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 10 IG41_SR2 SilentIntergenicRegion 0 0.05 0.00 29.23 0.00 0.00 0.00 0.38 0.07 0.36 0.15 25.38 14.23 8.21 6.29 1.33 9.74 0.77 0.27 0.08 0.08 0.00 0.00 0.00 11 ER1a ExonRegion 0 6.03 7.74 158.87 5.12 11.69 5.88 74.27 3.82 4.59 202.32 74.51 194.10 125.42 19.03 6.71 24.12 7.85 7.34 3.98 27.72 1.31 1.67 2.27 12 E1_Ab KnownBoundary 0 0.00 0.00 283.02 10.09 0.00 0.00 0.00 9.53 0.00 285.27 113.77 575.29 247.22 24.37 10.75 12.39 0.00 2.45 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 1.24 3.53 318.02 6.60 15.06 6.22 100.55 2.70 1.25 413.58 82.04 471.59 263.17 22.37 8.27 24.75 3.09 2.80 0.37 20.65 0.00 0.00 0.00 14 E1_Da NovelBoundary 0 0.00 0.00 332.22 2.00 12.22 10.90 32.42 0.00 3.41 91.84 109.03 446.40 159.89 44.74 10.75 19.31 0.00 4.44 0.00 6.07 0.00 0.00 0.00 15 E1a_E2a KnownJunction 0 0.00 0.00 192.78 1.80 15.96 0.00 62.09 2.05 1.33 322.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.48 5.70 0.00 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I1 Intron 0 0.24 1.64 133.31 2.49 2.24 7.88 17.78 1.72 1.28 87.89 54.73 249.64 156.52 14.39 3.88 17.40 1.29 2.28 0.27 8.42 0.00 0.00 0.08 18 I1_SR1 SilentIntronRegion 0 0.00 0.39 60.15 0.59 0.97 5.89 12.23 0.58 0.65 27.09 31.32 151.47 99.72 8.79 2.24 14.80 0.79 1.84 0.43 2.30 0.00 0.00 0.52 19 I1_AR1 ActiveIntronRegion 0 0.00 2.31 164.24 2.17 2.72 5.09 19.04 2.54 0.94 93.68 65.68 242.82 173.14 16.42 4.09 19.64 3.65 2.43 0.10 10.57 0.00 0.00 0.00 20 I1_SR2 SilentIntronRegion 0 0.38 1.73 141.21 3.09 2.39 9.37 18.78 1.73 1.56 101.41 56.90 277.20 165.29 15.12 4.22 17.29 0.59 2.35 0.29 9.23 0.00 0.00 0.00 21 E2_Aa NovelBoundary 1 0.00 0.00 213.98 1.73 0.00 0.00 18.37 2.22 0.00 100.95 16.53 380.97 167.36 18.42 10.75 22.56 0.00 1.74 0.00 3.07 0.00 0.00 0.00 22 ER2a ExonRegion 0 0.39 0.00 94.68 0.84 2.40 3.07 18.77 0.00 0.07 49.24 57.20 266.93 148.52 10.42 3.00 20.32 1.84 0.00 0.00 0.00 0.00 0.00 0.00 23 E2_Da NovelBoundary 0 0.00 2.83 105.17 0.00 0.00 2.44 3.75 0.00 1.74 0.00 99.60 236.48 254.69 16.25 9.02 54.26 12.06 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 0.04 0.16 44.66 0.53 0.32 0.92 2.74 0.31 0.56 10.15 32.24 153.04 87.09 9.95 2.19 11.49 0.66 0.59 0.19 1.45 0.00 0.00 0.00 25 I2_AR1 ActiveIntronRegion 0 0.00 0.00 22.12 0.00 0.00 0.37 1.85 0.00 0.00 0.37 31.89 185.08 96.15 10.43 2.61 5.94 0.00 0.00 0.00 0.05 0.00 0.00 0.00 26 I2_SR1 SilentIntronRegion 0 0.04 0.17 45.06 0.54 0.33 0.93 2.76 0.32 0.57 10.31 32.27 152.64 87.01 9.95 2.18 11.59 0.68 0.60 0.20 1.48 0.00 0.00 0.00 27 E3_Aa NovelBoundary 0 0.00 0.00 199.82 3.16 6.79 0.00 21.64 0.00 0.00 100.33 37.80 16.96 31.65 12.01 0.00 26.57 4.77 16.50 4.24 21.67 0.00 0.00 0.00 28 ER3a ExonRegion 0 0.79 0.91 106.61 1.67 1.81 0.07 17.25 0.87 0.76 79.00 40.73 208.50 121.65 12.57 2.12 9.32 0.62 1.69 0.11 8.74 0.00 0.08 0.22 29 IG42_SR1 SilentIntergenicRegion 0 0.13 0.00 27.08 0.00 0.33 0.34 1.16 0.00 0.00 0.21 34.97 93.48 88.41 7.77 1.88 8.93 0.83 0.12 0.40 0.00 0.00 0.13 0.00 30 IG42_AR1 ActiveIntergenicRegion 0 0.00 0.00 17.93 0.00 0.30 0.00 0.75 0.00 0.00 0.00 27.25 155.86 145.06 6.07 1.16 3.69 0.37 0.21 0.00 0.00 0.00 0.00 0.00 31 IG42_AR2 ActiveIntergenicRegion 0 0.00 0.00 13.19 0.61 0.00 0.00 1.41 0.00 0.00 0.00 51.60 150.72 139.92 5.38 2.15 13.75 0.00 0.13 0.00 0.00 0.00 0.00 0.00 32 IG42_SR2 SilentIntergenicRegion 0 0.10 0.15 15.82 0.13 0.04 0.00 0.57 0.04 0.08 2.79 14.28 17.84 13.43 2.38 0.63 3.13 0.20 0.36 0.00 0.34 0.01 0.02 0.02 33 IG42_AR3 ActiveIntergenicRegion 0 0.00 0.31 45.60 0.00 0.00 0.00 0.14 0.00 0.28 0.00 14.53 5.80 2.68 1.15 0.31 4.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 IG42_AR4 ActiveIntergenicRegion 0 4.48 4.83 5.81 2.87 3.15 45.75 3.67 2.73 1.60 2.50 11.16 0.36 0.47 3.20 1.79 4.19 3.89 2.88 2.60 11.04 9.22 7.41 10.38 35 IG42_AR9 ActiveIntergenicRegion 0 1.77 5.41 1.21 1.86 5.40 18.68 1.26 1.35 0.63 0.41 4.43 3.44 3.22 0.64 0.94 0.97 0.79 0.56 2.13 2.91 0.64 2.25 2.01 36 IG42_SR9 SilentIntergenicRegion 0 3.00 19.68 9.29 4.04 5.35 55.25 6.45 5.58 2.11 4.22 7.67 22.07 21.79 1.57 1.97 0.19 3.30 1.85 3.19 10.64 1.64 14.79 7.48 37 IG42_AR10 ActiveIntergenicRegion 0 0.00 10.41 9.59 3.61 5.35 39.91 5.76 3.76 2.11 3.04 5.34 18.85 8.83 1.15 0.00 0.00 1.94 1.74 0.37 6.13 0.00 8.33 6.39 38 IG42_AR11 ActiveIntergenicRegion 0 1.10 6.57 2.65 1.41 1.26 16.84 2.75 2.66 1.48 2.09 2.63 5.19 3.56 1.21 0.26 0.77 0.86 0.38 0.66 3.06 0.46 3.19 1.88