Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC018865.2 Gene 0 5.20 2.38 202.47 1.22 35.84 10.41 81.45 30.23 1.57 13.95 0.39 0.91 1.01 0.53 0.96 1.27 0.88 2.77 2.88 13.84 0.64 0.42 1.01 2 325390 Transcript 0 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 449736 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 456785 Transcript 0 5.27 1.72 507.38 0.51 49.83 28.09 87.31 89.57 0.61 43.83 0.02 0.00 0.02 0.04 0.01 0.01 0.02 0.62 0.38 15.82 0.01 0.00 0.01 5 432061 Transcript 0 4.53 0.44 73.50 0.10 45.27 1.34 77.99 3.10 0.17 2.25 0.00 0.00 0.00 0.10 0.00 0.00 0.00 1.78 1.42 8.96 0.00 0.15 0.00 6 428123 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 444030 Transcript 0 11.34 2.25 294.54 0.01 110.11 17.62 239.17 27.29 2.09 14.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.18 3.52 21.30 0.00 0.00 0.00 8 449170 Transcript 0 4.29 2.23 46.00 1.36 19.12 4.54 51.43 9.74 1.55 5.13 0.49 1.16 1.26 0.61 1.27 1.57 1.13 2.64 2.98 12.97 0.83 0.54 1.35 9 440931 Transcript 0 0.00 0.02 3.21 0.00 0.34 0.19 2.34 0.06 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 Ix Intron 0 0.76 0.00 15.88 0.00 2.89 0.00 30.76 0.19 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.46 3.21 0.00 0.00 0.00 19 Ix_SR1 SilentIntronRegion 0 0.76 0.00 15.95 0.00 2.90 0.00 30.88 0.19 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.46 3.22 0.00 0.00 0.00 20 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 0.63 0.09 26.88 0.09 5.78 0.49 30.69 1.61 0.22 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.52 9.26 0.00 0.00 0.00 23 Ix_SR1 SilentIntronRegion 0 0.63 0.09 26.89 0.09 5.78 0.49 30.71 1.61 0.22 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.52 9.26 0.00 0.00 0.00 24 ER6a ExonRegion 0 0.00 0.00 0.59 0.00 0.53 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 Ix Intron 0 1.02 0.69 41.79 0.20 8.42 1.42 45.68 1.87 0.18 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 1.70 9.57 0.00 0.00 0.00 27 Ix_SR1 SilentIntronRegion 0 1.03 0.69 41.87 0.20 8.43 1.42 45.76 1.87 0.18 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 1.70 9.59 0.00 0.00 0.00 28 ER7a ExonRegion 0 0.00 0.00 10.59 0.00 1.01 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E7a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 1.20 0.33 59.02 0.00 6.95 1.04 30.43 3.97 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.57 0.00 0.00 0.00 31 Ix_AR1 ActiveIntronRegion 0 1.83 0.00 78.37 0.00 11.81 3.35 48.47 6.31 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.76 0.00 0.00 0.00 32 Ix_SR1 SilentIntronRegion 0 1.07 0.40 55.08 0.00 5.93 0.55 26.66 3.48 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.33 0.00 0.00 0.00 33 ER8a ExonRegion 0 3.81 0.37 44.21 0.00 13.01 10.85 28.62 16.04 0.00 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 6.90 0.00 0.00 0.00 34 E8_Da NovelBoundary 0 6.59 0.00 135.03 0.00 21.05 2.90 170.73 4.89 5.01 8.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.96 0.00 28.76 0.00 0.00 0.00 35 E8a_E9c NovelJunction 0 0.00 0.00 45.89 0.00 8.66 5.17 7.73 21.36 0.00 14.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 0.00 36 E8a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 19.02 0.00 26.49 0.00 33.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E9_Aa NovelBoundary 0 87.42 15.46 415.69 0.00 294.06 19.99 774.39 14.87 1.56 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.54 0.00 74.27 0.00 0.00 0.00 38 ER9a ExonRegion 0 18.12 1.78 289.24 0.40 181.06 5.34 309.62 12.40 0.68 7.43 0.00 0.00 0.00 0.39 0.00 0.00 0.00 7.11 5.66 35.83 0.00 0.61 0.00 39 E9_Ab KnownBoundary 0 46.75 11.77 387.95 1.83 86.16 11.07 394.51 14.54 1.77 6.63 0.00 0.00 0.00 0.00 4.45 0.00 0.00 24.62 55.15 50.37 3.09 0.00 0.00 40 ER9b ExonRegion 0 27.69 4.90 414.27 2.10 229.96 10.13 339.94 21.54 3.39 10.07 0.57 0.00 3.40 0.78 0.60 5.23 1.94 8.48 11.31 59.99 0.65 0.61 0.00 41 E9_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER9c ExonRegion 0 12.29 1.45 328.26 1.46 65.49 3.11 183.73 15.57 3.20 12.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.43 4.80 40.16 0.00 0.00 0.00 43 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E9a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER10a ExonRegion 0 8.75 0.00 88.17 0.00 50.60 1.33 110.16 10.37 1.07 7.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.27 0.00 0.00 0.00 46 E10_Da KnownBoundary 0 23.93 0.00 197.30 0.00 124.45 5.34 218.52 24.77 1.36 15.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.70 0.00 0.00 0.00 47 ER10b ExonRegion 0 8.91 0.00 116.10 0.00 57.53 9.07 167.81 16.42 0.98 6.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.28 14.36 0.00 0.00 0.00 48 E10b_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E11_Aa NovelBoundary 0 10.45 3.35 160.70 0.00 64.09 2.90 128.34 9.98 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.60 0.00 0.00 0.00 50 ER11a ExonRegion 0 11.34 2.25 294.54 0.01 110.11 17.62 239.17 27.29 2.09 14.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.18 3.52 21.30 0.00 0.00 0.00 51 E11_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER11b ExonRegion 0 18.54 0.00 454.61 1.36 115.50 10.37 237.46 54.12 2.56 40.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 34.14 0.00 0.00 0.00 53 E11a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E11a_E12c KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 Ix Intron 0 0.72 0.10 21.80 0.10 4.93 3.83 41.12 7.50 0.54 4.89 0.19 0.17 1.20 0.00 0.00 0.00 0.16 0.58 0.00 8.88 0.00 0.30 0.00 56 Ix_SR1 SilentIntronRegion 0 0.72 0.10 21.82 0.10 4.94 3.84 41.16 7.51 0.54 4.90 0.19 0.17 1.21 0.00 0.00 0.00 0.16 0.58 0.00 8.89 0.00 0.30 0.00 57 E12_Aa NovelBoundary 0 0.00 0.00 62.39 7.82 0.00 5.79 89.92 14.75 1.79 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.51 0.00 0.00 0.00 58 ER12a ExonRegion 0 4.52 4.47 92.00 2.71 19.65 9.08 74.38 19.47 3.11 10.26 0.97 2.32 2.51 1.22 2.54 3.13 2.25 5.28 5.96 15.52 1.67 1.08 2.70 59 E12_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E12_Ac KnownBoundary 0 0.00 0.00 42.37 0.00 7.98 0.00 15.02 7.56 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 0.00 61 ER12b ExonRegion 0 21.17 0.00 296.54 1.36 107.03 18.34 235.67 50.13 3.71 27.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 31.91 0.00 0.00 0.00 62 ER12c ExonRegion 0 27.18 2.47 407.68 0.23 106.95 37.10 262.33 50.89 4.83 33.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 36.29 0.00 0.00 0.00 63 E12_Ad KnownBoundary 0 38.53 29.40 528.40 1.86 101.70 19.59 274.47 45.18 2.86 36.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.55 0.00 0.00 0.00 64 ER12d ExonRegion 0 14.20 3.32 239.07 0.91 44.71 21.63 122.50 19.42 0.86 13.84 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.91 0.00 20.82 0.00 0.00 0.00 65 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E12a_E13b KnownJunction 0 4.07 0.00 0.00 0.00 18.59 0.00 28.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.42 0.00 0.00 0.00 67 E12a_E14a KnownJunction 0 0.00 0.00 5.44 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E12a_E15a KnownJunction 0 0.00 0.00 1.09 0.00 0.00 0.00 3.75 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER13a ExonRegion 0 4.54 1.30 184.77 0.34 28.29 12.79 63.93 28.74 0.16 13.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.42 3.94 0.00 0.00 0.00 70 E13_Da KnownBoundary 0 49.05 89.00 2262.16 4.56 230.98 125.16 550.75 225.41 12.21 103.50 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 202.08 104.50 0.00 0.00 3.33 71 ER13b ExonRegion 0 11.99 4.79 1477.92 1.53 136.48 54.40 233.32 226.18 1.83 87.74 0.05 0.01 0.07 0.11 0.02 0.04 0.05 0.39 1.15 40.55 0.04 0.00 0.04 72 E13_Ab KnownBoundary 0 0.00 0.00 1239.96 18.18 66.38 10.96 101.53 178.34 2.52 80.16 0.00 0.00 0.00 4.59 0.00 4.27 0.00 46.59 16.47 80.28 0.00 0.00 0.00 73 ER13c ExonRegion 0 10.45 0.56 548.88 0.00 61.25 16.74 99.94 77.26 0.78 41.23 0.87 1.82 0.81 2.54 0.50 0.67 0.75 1.16 1.37 38.89 0.47 0.00 0.68 74 E13_Db NovelBoundary 0 5.78 3.35 34.53 0.00 28.69 5.39 96.80 13.43 0.00 8.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.87 0.00 0.00 0.00 75 I13_SR1 SilentIntronRegion 0 1.93 0.30 21.46 0.30 13.63 4.04 34.21 10.58 0.63 9.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 9.91 0.00 0.00 0.00 76 I13_AR1 ActiveIntronRegion 0 0.56 0.00 17.79 0.00 8.67 9.02 32.85 4.17 0.62 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.52 0.00 0.00 0.00 77 I13_AR2 ActiveIntronRegion 0 2.34 0.13 36.06 0.13 24.03 6.42 46.68 12.20 0.00 10.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.77 0.00 0.00 0.00 78 I13_AR3 ActiveIntronRegion 0 7.00 0.00 44.02 0.00 35.92 2.47 82.34 24.53 0.00 16.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.88 0.00 0.00 0.00 79 I13_AR4 ActiveIntronRegion 0 8.77 0.00 60.04 0.00 36.31 1.83 77.78 23.89 0.00 14.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.27 0.00 0.00 0.00 80 I13_AR5 ActiveIntronRegion 0 2.69 0.17 41.93 0.00 30.42 7.05 50.19 21.06 0.30 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 6.61 0.00 0.00 0.00 81 ER14a ExonRegion 0 0.00 0.00 5.54 0.00 0.28 0.00 2.45 0.00 0.00 1.59 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 82 E14_Da KnownBoundary 0 6.22 2.76 22.80 16.85 7.30 16.13 14.31 14.99 15.08 9.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 83 ER14b ExonRegion 0 0.00 0.00 3.48 0.00 0.00 0.00 0.39 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 E14_Db NovelBoundary 0 7.19 5.20 16.41 28.73 12.05 21.92 22.35 17.42 13.57 9.99 0.00 0.00 7.47 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 2.82 0.00 85 ER15a ExonRegion 0 0.00 0.05 5.33 0.00 0.68 0.38 0.93 0.12 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00