Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC140481.3 Gene 0 23.33 34.59 608.04 1.91 53.22 18.20 235.66 29.83 7.70 14.10 0.04 0.77 0.99 0.33 0.23 0.37 0.19 12.75 92.98 50.75 0.48 1.39 2.43 2 413041 Transcript 0 0.00 0.00 0.02 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 415406 Transcript 0 4.40 1.09 34.40 0.00 0.00 0.00 11.85 0.77 1.13 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 23.98 12.29 3.15 0.69 0.78 4 424873 Transcript 0 15.49 14.60 466.72 0.67 1.77 5.64 79.77 4.84 6.13 0.82 0.00 0.00 0.00 0.00 0.14 0.12 0.00 7.38 81.28 26.33 0.18 1.60 0.86 5 433703 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 438056 Transcript 0 1.56 1.51 36.41 1.83 1.66 0.00 12.61 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.83 2.40 0.00 0.00 0.00 0.00 7 423905 Transcript 0 0.00 3.35 7.57 0.00 0.00 0.00 11.66 4.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 5.62 0.00 0.00 0.00 8 430785 Transcript 0 16.57 26.57 422.76 1.55 75.18 20.11 270.81 37.72 5.18 18.93 0.03 1.56 2.35 0.66 0.19 0.21 0.27 11.66 52.30 40.08 0.64 0.94 1.37 9 449066 Transcript 0 0.00 0.00 24.84 0.00 0.00 0.00 12.54 0.00 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.09 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 780.58 679.94 533.10 490.85 715.11 366.04 518.21 570.07 628.38 499.36 269.81 117.19 101.29 108.78 279.13 559.08 520.34 726.68 491.97 517.03 314.01 189.09 487.51 15 ER3a ExonRegion 0 4.40 1.09 34.40 0.00 0.00 0.00 11.85 0.77 1.13 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 23.98 12.29 3.15 0.69 0.78 16 E3_Ab KnownBoundary 0 3.19 0.00 112.21 0.00 0.00 0.00 11.44 0.00 8.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.37 5.69 5.44 0.00 0.00 17 ER3b ExonRegion 0 0.32 3.06 61.80 0.00 0.00 0.70 10.74 1.17 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 16.30 20.50 0.87 1.77 1.91 18 E3_Ac KnownBoundary 0 3.78 3.29 103.63 0.00 11.46 15.05 73.40 24.40 1.74 7.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 13.18 29.85 0.00 3.12 4.10 19 ER3c ExonRegion 0 5.96 8.57 94.58 0.00 1.95 6.00 38.19 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.82 41.02 29.27 0.00 3.41 4.36 20 E3_Ad KnownBoundary 0 19.11 17.23 103.46 0.00 15.11 0.00 107.71 7.52 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.85 44.42 0.00 0.00 4.27 21 ER3d ExonRegion 0 10.25 27.51 137.27 0.00 5.77 5.60 59.82 4.46 4.13 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.20 158.09 29.28 0.00 2.69 1.70 22 E3a_E4b KnownJunction 0 3.19 19.14 44.20 0.00 0.00 0.00 14.31 2.34 3.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 120.66 6.52 0.00 0.00 0.00 23 E3a_E4c KnownJunction 0 0.00 3.35 7.57 0.00 0.00 0.00 11.66 4.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 5.62 0.00 0.00 0.00 24 E3a_E4e KnownJunction 0 0.00 0.00 49.94 0.00 0.00 0.00 13.34 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 60.61 6.26 0.00 2.63 0.00 25 E4_Aa NovelBoundary 0 2.96 6.25 283.88 0.00 231.15 58.60 556.94 22.06 8.19 13.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.70 42.45 95.81 0.00 0.00 0.00 26 ER4a ExonRegion 0 19.20 14.36 293.46 1.24 156.01 17.38 427.84 18.15 6.88 8.44 0.00 1.97 0.59 0.83 0.21 0.67 0.82 16.95 26.55 52.99 0.22 0.85 1.40 27 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4b ExonRegion 0 19.11 24.69 207.92 1.52 65.73 7.10 267.68 3.63 2.47 2.34 0.00 0.00 0.00 0.57 1.47 1.26 0.33 24.78 47.92 23.82 1.40 0.00 1.28 29 E4_Da KnownBoundary 0 25.86 19.40 245.67 0.00 105.35 5.34 249.34 5.09 3.27 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.92 21.46 34.13 0.00 0.00 0.00 30 E4_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E4b_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER4c ExonRegion 0 16.44 18.69 142.66 0.89 64.63 18.41 345.25 5.72 4.37 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.06 32.71 21.85 2.88 0.00 2.37 33 ER4d ExonRegion 0 12.90 19.94 42.29 1.44 23.91 4.76 204.19 5.47 0.76 0.19 0.00 1.42 1.54 1.07 0.00 0.00 0.00 5.12 31.53 20.33 2.48 0.00 1.86 34 E4_Ac KnownBoundary 0 17.19 22.10 38.44 0.00 0.00 0.00 37.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 32.09 3.03 0.00 0.00 35 ER4e ExonRegion 0 20.00 11.64 212.34 0.84 20.82 5.81 121.20 9.02 3.19 6.46 0.00 1.57 1.63 0.60 0.30 0.74 0.00 15.27 75.27 48.51 1.14 0.39 2.20 36 E4_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E4c_E4d KnownJunction 0 3.11 3.03 41.96 1.60 3.31 0.00 16.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.62 4.80 0.00 0.00 0.00 0.00 38 E4c_E4e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER4f ExonRegion 0 17.25 12.48 267.50 1.43 110.57 17.77 324.90 25.53 5.14 13.82 0.00 2.36 7.65 1.33 0.62 0.20 0.56 15.33 24.64 37.65 0.51 1.95 0.00 40 E4_Ad KnownBoundary 0 0.00 0.00 41.66 1.66 0.00 0.00 29.24 4.60 6.31 8.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 5.37 0.00 0.00 0.00 41 ER4g ExonRegion 0 11.34 10.71 362.39 0.88 43.60 6.97 181.94 14.98 5.85 5.95 0.00 0.12 0.00 0.00 0.00 0.00 0.00 19.86 32.42 26.10 0.00 0.00 0.00 42 E4_Dd KnownBoundary 0 11.04 6.12 165.55 0.00 0.00 15.50 105.99 2.34 1.79 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 23.44 15.34 0.00 0.00 0.00 43 E4d_E4e KnownJunction 0 0.00 0.00 30.87 2.06 0.00 0.00 8.39 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 0.00 0.00 0.00 0.00 44 ER4h ExonRegion 0 13.98 21.33 129.47 0.05 5.53 6.57 90.65 5.53 3.26 0.50 0.00 1.13 0.70 0.00 0.00 0.00 0.00 2.76 28.77 13.35 0.00 0.01 1.05 45 E4_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E4_Af KnownBoundary 0 11.26 21.25 682.26 5.23 101.27 13.91 304.59 46.66 6.25 31.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.17 41.04 48.77 0.00 0.00 12.38 47 ER4i ExonRegion 0 7.62 19.73 288.08 2.73 5.35 16.41 199.79 8.64 4.26 0.00 0.00 0.00 8.91 0.00 0.00 0.00 0.00 3.70 89.19 34.57 0.00 1.15 9.40 48 ER4j ExonRegion 0 9.46 23.02 192.77 2.03 1.42 4.76 97.07 5.48 4.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 98.07 40.15 0.00 0.00 6.75 49 E4e_E5a KnownJunction 0 12.52 29.60 123.71 0.00 0.00 0.00 32.86 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 107.67 56.95 0.00 0.00 4.35 50 ER5a ExonRegion 0 17.20 50.75 219.78 0.78 2.00 3.29 94.66 4.71 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.52 148.83 65.49 0.00 3.93 4.89 51 E5_Da KnownBoundary 0 35.49 43.15 769.87 9.06 12.73 10.62 227.57 7.60 6.42 5.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.50 224.19 44.55 0.00 3.12 4.35 52 ER5b ExonRegion 0 22.82 44.58 327.90 2.76 7.69 14.94 145.92 14.36 2.65 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.63 110.58 55.15 0.00 1.18 8.41 53 E5_Db KnownBoundary 0 3.78 18.09 89.15 0.00 7.47 0.00 41.12 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.61 34.07 0.00 2.51 0.00 54 E5b_E5b KnownJunction 0 28.30 12.50 145.68 0.00 0.00 7.50 66.69 2.46 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 59.58 35.67 0.00 0.00 7.68 55 E5b_E5c KnownJunction 0 0.00 0.00 24.84 0.00 0.00 0.00 12.54 0.00 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 56 ER5c ExonRegion 0 19.53 64.75 1381.07 3.62 79.89 54.07 306.45 133.91 9.83 71.73 0.13 0.94 1.27 0.09 0.14 0.20 0.00 18.11 150.00 76.08 0.00 1.90 2.53 57 E5_Ab KnownBoundary 0 0.00 11.84 216.40 0.00 0.00 8.23 61.08 5.09 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 80.85 3.26 0.00 0.00 0.00 58 ER5d ExonRegion 0 30.85 36.41 947.65 0.83 46.78 36.05 293.92 63.22 14.36 24.37 0.00 0.00 0.22 0.00 1.59 0.00 0.00 16.20 273.69 83.41 0.14 1.73 12.39 59 E5_Dc KnownBoundary 0 24.82 59.13 594.80 3.60 8.40 14.20 279.46 13.88 21.27 4.41 0.00 0.00 0.00 0.00 0.00 0.00 4.68 11.77 201.42 111.98 0.00 8.33 4.35 60 ER5e ExonRegion 0 42.97 31.90 522.91 0.61 6.61 16.59 223.77 8.27 14.93 1.17 0.00 0.00 4.58 0.00 0.00 3.65 0.00 11.00 182.53 109.69 2.63 3.97 6.16 61 E5_Dd KnownBoundary 0 60.97 47.89 640.13 0.00 8.66 2.84 194.58 4.81 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.17 177.51 91.72 0.00 2.33 0.00 62 ER5f ExonRegion 0 52.39 84.86 1005.04 5.07 8.28 17.30 256.63 12.91 13.92 2.67 0.14 0.00 0.33 0.23 0.28 0.42 0.00 10.22 184.91 75.17 0.41 2.18 4.32 63 E5_De KnownBoundary 0 17.86 54.53 3244.74 7.86 35.23 51.85 468.70 193.75 20.43 81.63 0.00 0.00 0.00 0.00 6.06 0.00 0.00 15.88 224.19 102.71 2.97 0.00 8.02 64 ER5g ExonRegion 0 42.23 41.76 1326.93 2.00 5.32 16.91 218.02 14.53 16.75 2.47 0.00 0.00 0.00 0.00 0.41 0.35 0.00 19.69 183.23 68.48 0.54 2.18 2.59 65 E5_Ac KnownBoundary 0 39.56 49.60 1170.15 5.13 0.00 2.67 70.40 0.00 9.84 4.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.97 204.15 62.70 0.00 0.00 12.12 66 ER5h ExonRegion 0 22.23 23.38 585.36 0.15 2.29 2.85 51.71 3.54 5.29 0.49 0.00 0.00 0.00 0.37 0.00 0.71 0.00 14.24 94.55 32.94 0.00 1.15 3.02 67 ER5i ExonRegion 0 4.23 2.03 23.28 0.00 0.00 0.00 7.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00