Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC018737.4 Gene 0 32.41 41.39 49.34 54.84 38.82 53.62 42.80 30.16 17.68 21.85 26.44 36.12 36.29 21.65 29.92 29.01 23.13 23.53 31.02 36.92 10.01 12.83 10.39 2 414554 Transcript 0 2.74 2.82 2.43 2.84 5.02 4.87 3.38 0.59 0.63 2.42 2.17 0.26 0.52 2.73 2.27 7.13 2.28 2.80 3.58 4.10 2.50 1.52 1.32 3 413904 Transcript 0 10.37 0.00 2.81 0.00 4.33 0.00 0.00 0.00 0.00 2.66 4.63 0.00 0.00 0.00 10.26 0.00 4.77 1.95 0.00 0.00 0.00 0.00 0.00 4 439321 Transcript 0 15.06 22.16 26.97 29.10 22.78 22.62 23.41 20.26 10.44 12.74 11.06 35.22 25.67 7.39 11.86 10.25 6.55 5.49 14.06 17.94 3.45 9.67 2.58 5 447668 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 419902 Transcript 0 5.98 6.92 5.29 16.00 9.43 2.82 5.92 2.35 1.95 4.52 2.18 4.52 5.01 0.81 2.18 1.11 0.53 0.37 6.95 1.13 1.42 2.22 0.37 7 ER1a ExonRegion 0 5.48 5.64 2.68 5.67 10.04 9.75 6.75 1.17 1.25 3.18 4.35 0.52 1.04 5.45 4.54 14.26 4.56 5.59 7.16 8.20 5.00 3.03 2.64 8 E1_Ab KnownBoundary 0 35.19 15.59 11.92 16.18 32.00 34.92 22.30 1.85 0.00 13.75 17.37 6.00 6.66 7.42 8.90 19.65 18.51 13.18 13.37 16.23 15.20 6.18 4.35 9 ER1b ExonRegion 0 15.60 4.52 7.97 12.69 6.72 8.67 4.89 6.65 3.33 8.95 6.74 7.36 0.37 4.37 7.96 13.39 11.07 8.96 9.25 12.33 8.23 7.28 4.47 10 E1_Da NovelBoundary 0 0.00 8.88 8.54 4.79 3.90 8.52 2.25 5.63 1.79 2.61 0.00 20.11 0.00 2.12 4.45 23.84 14.31 5.97 0.00 8.37 3.03 0.00 0.00 11 E1a_E2d KnownJunction 0 0.00 0.00 2.19 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3a KnownJunction 0 10.37 0.00 2.81 0.00 4.33 0.00 0.00 0.00 0.00 2.66 4.63 0.00 0.00 0.00 10.26 0.00 4.77 1.95 0.00 0.00 0.00 0.00 0.00 13 E2_Aa NovelBoundary 0 3.26 2.83 16.06 19.91 7.64 5.79 5.96 7.43 3.04 9.72 0.00 0.00 0.00 7.42 9.64 18.88 18.14 14.14 4.24 12.27 3.15 0.00 7.68 14 ER2a ExonRegion 0 0.97 4.49 6.02 2.09 7.39 8.12 2.62 1.33 1.73 1.74 1.97 5.24 0.00 3.20 3.86 7.58 1.68 5.58 3.25 3.26 2.25 4.92 1.50 15 E2_Ab NovelBoundary 0 0.00 2.70 8.99 4.13 11.88 35.15 6.18 2.46 3.07 1.64 0.00 6.30 0.00 2.47 4.45 7.78 0.00 11.52 0.00 3.07 0.00 5.08 0.00 16 E2a_E2d KnownJunction 0 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2b ExonRegion 0 3.17 8.47 2.86 2.73 8.92 20.38 5.66 2.59 0.82 1.66 0.32 3.37 0.00 3.43 9.19 5.78 0.00 4.00 1.77 1.54 0.00 2.78 1.79 18 ER2c ExonRegion 1 6.35 12.20 1.23 5.45 5.35 28.73 19.42 3.46 0.00 3.44 7.09 0.00 0.00 3.25 20.31 11.89 3.30 6.78 3.19 7.09 1.47 4.17 3.92 19 ER2d ExonRegion 1 30.85 33.10 39.37 33.71 37.07 92.06 44.51 23.39 13.56 19.26 52.74 8.42 7.75 20.48 35.06 49.07 51.93 58.04 46.85 34.17 29.37 9.58 20.69 20 E2_Ad KnownBoundary 1 26.52 16.05 47.43 43.62 4.33 4.94 7.77 36.06 19.88 27.99 42.80 18.91 6.66 29.49 27.44 0.00 61.06 11.07 12.61 65.00 17.05 8.88 8.28 21 ER2e ExonRegion 0 20.42 24.58 44.34 57.16 9.47 16.73 4.67 26.47 23.48 16.43 16.79 5.03 4.92 28.06 47.73 60.45 23.56 53.05 65.10 47.95 12.01 14.53 33.62 22 E2_Db NovelBoundary 0 134.76 142.28 499.98 562.53 101.95 116.64 183.81 583.66 469.47 456.92 18.95 47.42 23.05 16.48 44.01 156.28 103.13 688.96 85.84 180.37 46.83 96.08 118.65 23 E2b_E3a KnownJunction 1 7.11 28.55 36.10 46.41 40.75 26.29 10.11 13.72 18.69 10.58 7.00 0.00 31.98 12.18 0.00 51.27 12.06 90.53 20.99 25.38 12.54 0.00 24.93 24 E3_Aa NovelBoundary 0 17.26 37.23 17.56 15.58 30.05 33.84 63.46 14.42 7.58 9.35 0.00 12.45 19.15 12.07 22.13 0.00 13.00 16.08 4.05 20.90 8.46 2.88 0.00 25 ER3a ExonRegion 0 49.41 71.09 62.90 74.63 56.38 117.65 69.05 29.07 22.11 27.87 35.81 14.18 19.46 44.04 52.47 48.79 35.91 61.44 44.83 62.91 14.56 9.93 15.16 26 E3_Da KnownBoundary 0 16.23 15.52 43.32 30.67 4.33 17.66 5.56 12.12 11.26 8.11 11.53 5.70 0.00 7.71 17.68 26.75 11.13 14.09 31.06 19.75 2.66 4.78 0.00 27 E3_Db KnownBoundary 0 15.63 11.45 22.97 49.71 19.52 2.90 6.23 23.00 4.83 10.50 13.95 0.00 13.31 11.60 10.51 12.30 12.16 9.00 12.89 31.38 10.44 5.20 3.41 28 E3b_E4a KnownJunction 0 0.00 6.64 0.00 6.69 4.33 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 29 ER3b ExonRegion 0 42.33 50.84 87.00 102.22 45.49 25.67 29.13 38.03 19.76 29.82 25.13 21.65 23.45 45.48 40.62 44.58 29.71 49.89 63.71 72.34 22.04 12.50 23.49 30 ER3c ExonRegion 0 60.83 80.00 100.75 96.42 67.04 94.67 76.29 54.28 33.84 36.27 48.65 57.05 73.56 49.33 57.60 54.60 47.87 37.73 52.18 73.18 15.71 16.84 20.34 31 E3_Dc KnownBoundary 1 45.64 99.13 108.93 141.14 76.32 149.52 119.28 99.81 36.37 51.20 49.49 169.41 160.54 45.03 111.26 73.66 44.88 15.75 140.71 112.30 0.00 53.76 20.40 32 ER3d ExonRegion 1 32.75 64.23 140.71 171.53 79.68 125.87 89.92 120.03 49.88 54.41 66.42 147.80 185.26 40.15 79.14 55.07 49.70 26.02 118.65 105.32 6.37 57.47 14.19 33 E3_Dd KnownBoundary 0 28.75 51.44 143.61 176.50 75.98 118.74 79.54 102.23 44.68 46.15 69.81 142.85 135.38 39.03 104.33 44.26 48.15 19.19 69.65 101.95 14.95 47.52 7.94 34 ER3e ExonRegion 1 44.20 59.56 74.90 85.20 60.96 59.74 67.61 59.45 29.58 36.47 31.22 100.43 77.00 18.97 31.71 23.17 17.98 10.90 38.94 50.56 8.11 24.09 6.25 35 E3_De NovelBoundary 0 16.00 3.09 28.12 73.98 32.43 7.89 60.33 7.64 9.14 5.08 7.69 25.06 27.27 10.01 33.75 24.95 8.51 6.47 12.61 42.12 0.00 2.69 0.00 36 I3 Intron 0 7.62 8.93 11.55 24.53 15.51 8.46 20.06 6.56 5.42 6.76 2.21 7.54 9.08 3.82 3.49 3.26 2.76 3.84 10.49 15.42 1.07 0.64 2.71 37 I3_SR1 SilentIntronRegion 0 7.64 8.95 11.57 24.57 15.54 8.47 20.10 6.58 5.43 6.77 2.21 7.55 9.09 3.83 3.49 3.27 2.76 3.84 10.51 15.45 1.07 0.64 2.71 38 I3_SR1 SilentIntronRegion 0 4.38 5.12 6.26 16.53 5.34 2.68 8.22 2.61 3.57 4.36 1.11 4.18 3.81 1.41 1.45 1.96 1.68 3.29 5.13 7.77 0.90 0.21 1.18 39 ER4a ExonRegion 0 2.15 1.10 1.87 14.02 2.06 0.00 2.38 0.00 1.16 3.07 0.70 0.00 0.17 0.00 0.00 1.08 0.07 1.00 6.12 0.78 1.13 0.00 0.00 40 E4a_E5a KnownJunction 0 3.11 0.00 1.33 13.62 8.66 0.00 0.00 0.00 1.50 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.01 0.00 0.00 0.00 0.00 41 I4_AR1 ActiveIntronRegion 0 11.18 22.94 24.32 28.76 19.59 6.38 17.32 12.67 7.51 17.23 7.42 9.84 9.56 10.13 12.82 4.65 8.32 6.17 14.53 6.38 4.75 6.25 3.88 42 I4_SR2 SilentIntronRegion 0 13.13 18.67 19.03 18.40 19.24 12.96 17.09 9.27 3.65 17.60 8.63 9.70 13.49 6.70 10.88 7.38 6.96 10.72 14.63 9.50 7.11 4.65 8.38 43 E5_Aa NovelBoundary 0 213.89 475.31 289.85 172.07 122.75 100.17 178.99 92.99 42.30 186.64 134.14 175.86 231.15 142.45 116.32 69.81 117.06 17.29 62.50 55.10 43.12 155.29 23.65 44 ER5a ExonRegion 0 18.67 19.93 17.94 29.66 22.68 11.29 21.30 9.38 5.15 11.69 8.01 18.07 19.87 3.24 8.70 3.36 2.05 0.46 2.66 3.74 1.38 8.90 1.48