Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MFSD9 Gene 0 21.95 35.36 53.37 44.07 32.31 35.19 58.71 25.09 19.56 39.22 23.95 20.28 18.44 27.73 24.80 18.85 17.08 25.42 24.03 49.45 13.12 16.59 15.50 2 421966 Transcript 0 0.00 0.00 0.54 1.34 0.02 0.00 0.74 0.48 0.27 0.00 0.57 0.00 0.00 0.27 0.32 0.00 2.22 0.99 0.39 1.68 1.54 0.11 1.70 3 411991 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 437075 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 5 438943 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 258436 Transcript 0 50.79 67.04 87.89 81.99 69.90 63.70 111.27 41.79 26.74 56.59 18.02 30.05 29.18 22.45 22.27 12.35 9.76 12.77 23.59 57.32 5.15 21.94 11.95 7 462099 Transcript 0 0.51 0.00 1.55 0.91 0.74 0.20 2.06 0.26 0.21 2.76 0.54 2.73 0.00 2.15 0.59 3.32 3.18 1.01 2.65 4.14 0.47 0.69 0.44 8 428085 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 496253 Transcript 0 5.56 0.00 10.26 0.00 0.00 0.00 3.93 1.64 4.11 7.44 0.00 0.00 0.00 0.00 10.63 4.27 0.00 0.00 0.00 6.52 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 11 E1_Ac KnownBoundary 0 6.96 0.00 0.00 0.00 0.00 2.73 6.49 0.00 0.00 0.00 12.42 0.00 0.00 2.06 13.35 0.00 4.77 0.00 8.28 9.40 2.97 0.00 0.00 12 ER1b ExonRegion 1 1.59 0.25 1.17 1.02 1.56 1.38 11.75 0.00 0.36 1.58 4.19 0.00 0.00 4.06 13.30 4.46 10.32 3.77 7.43 7.36 7.07 2.52 3.18 13 E1_Ad KnownBoundary 0 6.74 8.81 3.13 4.00 11.71 7.15 37.58 2.46 5.01 15.53 13.58 0.00 0.00 2.47 20.27 19.40 22.07 23.75 13.27 23.33 17.24 6.00 19.55 14 ER1c ExonRegion 1 2.12 5.97 3.02 1.73 4.64 6.60 24.36 0.00 1.24 6.42 13.40 0.00 0.00 7.58 24.18 8.72 13.20 11.95 12.74 18.44 15.28 4.86 11.75 15 ER1d ExonRegion 0 2.49 1.65 3.70 5.08 3.73 6.76 11.44 8.29 5.07 14.43 12.33 5.05 2.04 10.74 10.22 9.49 11.07 16.52 11.49 22.28 9.04 5.35 10.38 16 E1_Da KnownBoundary 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 0.00 2.71 4.45 0.00 0.00 7.09 3.67 8.63 5.44 3.00 0.00 17 E1a_E2a KnownJunction 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 2.87 0.00 0.00 0.00 2.47 0.00 4.36 4.39 0.00 0.00 2.49 0.00 0.00 0.00 18 E1a_E2b KnownJunction 0 0.00 0.00 11.62 5.56 0.00 13.97 1.94 13.31 10.82 35.19 15.00 12.45 0.00 26.55 46.73 35.80 12.81 21.56 31.72 38.48 10.50 7.78 11.27 19 E1a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 20 ER1e ExonRegion 0 0.00 0.00 1.61 2.27 0.05 0.00 1.75 1.45 0.80 0.00 1.70 0.00 0.00 0.80 0.43 0.00 2.53 2.98 1.18 1.98 1.90 0.32 5.11 21 E1b_E2b KnownJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 2.68 2.72 0.00 0.00 22 ER2a ExonRegion 0 0.24 0.00 1.57 1.59 2.23 0.61 5.66 0.77 0.62 4.91 1.61 0.96 0.00 2.62 1.77 5.61 4.03 2.98 7.96 8.27 0.49 0.35 1.31 23 E2_Ac KnownBoundary 0 7.19 0.00 5.56 8.12 24.36 19.82 6.58 7.27 14.93 22.27 16.06 0.00 6.82 11.18 14.96 22.47 15.52 24.29 20.89 30.49 14.70 9.74 41.74 24 ER2b ExonRegion 0 4.23 0.96 6.78 8.74 15.74 14.56 7.94 13.83 15.40 35.42 17.17 5.86 4.14 24.65 36.52 36.19 19.22 26.63 40.47 46.31 12.70 8.33 30.75 25 ER2c ExonRegion 0 7.98 12.24 19.23 24.30 22.64 12.55 10.62 20.34 19.41 36.59 25.61 8.91 9.20 27.89 22.88 25.43 21.20 51.28 19.79 57.36 13.99 18.31 27.67 26 E2_Da KnownBoundary 0 3.78 0.00 5.71 3.90 0.00 0.00 7.07 0.00 0.00 2.10 0.00 12.30 0.00 2.47 0.00 0.00 4.02 0.00 0.00 6.01 2.84 3.12 0.00 27 E2a_E3a KnownJunction 0 2.82 13.42 11.80 6.99 0.00 5.05 8.08 2.38 1.39 12.38 9.95 0.00 0.00 4.77 4.45 3.76 0.00 4.93 0.00 3.26 0.00 5.45 4.10 28 E2a_E4a KnownJunction 0 3.48 9.01 8.34 34.36 8.40 14.65 13.03 21.85 16.93 18.21 34.11 31.96 28.41 33.96 19.28 14.44 21.41 46.30 29.93 18.09 20.51 19.29 13.06 29 ER2d ExonRegion 0 8.82 19.66 24.17 37.40 13.82 13.86 19.27 25.35 19.28 36.83 38.23 33.91 24.23 33.47 20.79 20.97 22.56 56.15 24.78 32.03 21.67 23.27 16.48 30 ER2e ExonRegion 0 1.29 0.00 1.29 1.14 0.00 0.00 0.51 0.00 0.00 0.51 0.00 7.22 0.00 1.35 0.00 0.00 1.10 0.05 0.00 1.65 0.92 1.74 0.00 31 E3_Aa NovelBoundary 0 0.00 0.00 1.27 7.99 4.33 0.00 26.41 4.76 1.22 2.93 0.00 0.00 12.66 4.94 0.00 4.36 0.00 1.91 4.33 8.44 0.00 2.88 3.93 32 ER3a ExonRegion 0 2.01 5.52 8.32 8.69 1.51 8.13 10.74 5.61 4.64 21.05 12.57 7.91 2.49 7.06 3.10 6.25 9.99 8.18 15.79 20.00 4.89 2.75 4.42 33 E3a_E4a KnownJunction 0 0.00 0.00 9.79 9.32 3.82 16.18 17.80 2.55 11.89 18.78 2.63 0.00 6.82 14.30 4.45 7.52 8.04 7.13 14.40 26.59 0.00 3.12 0.00 34 ER4a ExonRegion 0 10.01 4.39 26.23 35.19 14.41 20.46 48.96 24.24 25.88 49.06 37.34 17.81 33.15 44.85 22.02 19.39 36.31 46.82 23.02 42.70 26.14 24.86 19.02 35 E4_Da NovelBoundary 0 0.00 22.17 6.80 5.49 4.33 0.00 1.99 0.00 0.00 1.67 0.00 6.15 0.00 0.00 0.00 0.00 4.30 2.11 0.00 3.00 0.00 2.76 0.00 36 E4a_E5a KnownJunction 0 25.04 6.31 30.34 24.71 11.21 16.75 78.61 18.57 16.46 53.54 30.53 6.30 13.47 50.50 37.21 25.04 32.54 37.10 14.31 52.16 37.19 21.86 7.94 37 ER5a ExonRegion 0 12.25 14.02 28.94 28.19 13.52 23.58 34.40 28.63 27.76 53.84 45.07 21.50 15.55 45.65 38.28 25.08 28.26 43.18 16.49 50.84 23.66 15.97 16.28 38 E5_Da KnownBoundary 0 7.41 14.54 33.94 37.19 22.41 10.05 31.27 41.85 30.32 48.70 68.33 41.71 25.65 39.73 17.92 20.08 34.13 44.36 15.91 51.39 17.85 16.47 10.41 39 ER5b ExonRegion 0 4.41 11.62 30.63 38.78 19.79 14.34 28.66 21.40 23.18 41.98 43.64 15.12 10.02 46.57 20.15 27.36 28.62 38.88 34.78 47.65 21.98 21.03 12.03 40 E5b_E6a KnownJunction 0 10.74 6.71 20.58 21.58 8.66 14.42 36.26 6.04 19.97 31.99 34.90 11.55 26.13 33.85 24.11 23.84 17.30 35.57 13.84 39.31 21.19 17.27 3.67 41 E5b_E6b KnownJunction 0 3.70 8.81 6.71 8.49 7.30 2.84 14.22 2.22 3.10 12.36 5.16 0.00 0.00 7.42 4.45 8.12 9.54 2.36 4.71 21.54 5.50 5.45 4.35 42 E6_Ab NovelBoundary 0 3.19 21.97 49.73 21.08 0.00 31.40 52.64 29.53 19.70 42.25 38.69 23.26 19.64 29.61 27.32 31.02 28.33 25.29 29.65 38.22 31.26 30.19 16.13 43 ER6a ExonRegion 0 5.16 10.74 35.15 19.29 4.18 17.08 36.70 17.34 17.56 36.34 40.47 17.18 16.85 27.91 23.48 27.31 20.11 30.89 15.73 38.03 29.61 24.55 8.35 44 ER6b ExonRegion 0 6.29 21.08 44.46 32.09 14.03 27.11 44.16 24.43 21.72 41.04 39.03 20.60 17.52 48.45 33.97 28.74 36.12 29.79 34.43 57.29 22.84 19.72 15.28 45 E6_Da NovelBoundary 0 0.00 0.00 9.34 4.89 0.00 5.79 19.21 4.27 1.45 8.25 2.68 0.00 0.00 0.00 0.00 0.00 13.28 4.39 16.66 2.68 2.72 0.00 0.00 46 E6a_E7a KnownJunction 0 13.48 24.27 37.49 30.63 22.67 48.55 49.99 28.96 17.07 29.74 36.59 35.86 34.58 67.28 19.90 31.36 20.85 32.04 41.60 73.89 27.86 28.53 25.52 47 ER7a ExonRegion 0 14.70 19.00 53.18 27.56 18.27 25.25 40.63 22.61 21.40 27.63 30.59 18.08 17.20 48.76 41.90 30.84 25.92 48.16 29.04 58.12 29.33 15.94 18.35 48 E7_Da KnownBoundary 0 19.78 35.98 69.87 41.95 15.53 32.31 53.57 36.84 31.22 30.27 36.54 0.00 25.00 70.75 92.09 21.02 21.32 66.37 54.40 62.96 19.09 34.84 37.90 49 ER7b ExonRegion 0 5.74 18.23 59.16 30.17 8.04 25.89 37.15 27.74 24.34 31.00 36.69 8.45 13.97 37.48 43.85 22.74 17.55 48.71 21.61 55.71 15.79 17.83 14.11 50 E7_Db KnownBoundary 0 0.00 28.28 63.81 26.50 7.39 27.48 32.42 19.39 17.30 39.30 30.90 0.00 7.47 21.43 46.48 11.88 30.01 31.34 12.71 48.39 2.66 20.02 3.33 51 ER7c ExonRegion 0 9.40 14.44 40.10 23.11 18.18 34.86 36.39 16.89 16.01 31.74 27.72 8.65 9.24 29.91 28.05 18.15 22.03 31.56 22.90 47.66 17.20 11.30 15.00 52 E7_Ab KnownBoundary 0 10.89 5.46 45.56 37.69 26.49 30.49 41.42 20.13 17.91 46.52 22.58 6.30 0.00 14.07 36.71 16.32 30.48 33.45 20.80 61.94 18.66 17.21 12.63 53 ER7d ExonRegion 0 11.74 24.85 58.43 36.68 26.46 33.79 41.89 21.43 20.98 47.68 38.42 26.88 9.54 27.98 17.13 27.35 26.43 38.32 35.66 46.66 25.11 13.69 17.44 54 E7_Dc KnownBoundary 0 10.96 35.91 40.71 36.03 27.16 18.85 61.34 19.67 9.95 33.01 22.06 24.61 13.47 17.31 4.45 47.25 24.22 21.31 49.79 69.03 22.86 14.21 7.51 55 E7c_E7d KnownJunction 0 5.56 0.00 10.26 0.00 0.00 0.00 3.93 1.64 4.11 7.44 0.00 0.00 0.00 0.00 10.63 4.27 0.00 0.00 0.00 6.52 0.00 0.00 0.00 56 ER7e ExonRegion 0 15.15 41.13 61.49 55.04 29.89 27.96 65.23 29.88 21.62 42.76 29.07 28.15 19.39 28.84 20.69 23.22 18.43 27.73 27.12 56.98 13.10 20.54 20.79 57 E7_Dd KnownBoundary 0 21.63 56.37 40.86 23.37 15.70 12.27 35.86 11.67 10.94 32.50 14.90 18.91 8.28 14.95 19.66 21.19 4.77 25.25 0.00 54.27 12.11 11.70 12.04 58 E7d_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E7_Ac KnownBoundary 0 3.78 60.32 24.04 26.87 7.72 12.55 40.81 11.62 17.22 28.07 23.43 12.60 0.00 16.89 15.20 4.10 14.12 14.80 8.94 36.50 8.77 18.25 11.87 60 ER7f ExonRegion 0 13.32 62.11 42.53 30.84 15.05 13.07 35.36 15.05 19.20 41.19 25.45 21.29 5.86 16.85 12.57 15.98 10.18 26.33 5.97 52.04 13.41 19.88 14.07 61 ER7g ExonRegion 0 25.84 46.54 43.33 35.63 29.14 34.34 53.42 16.08 16.55 38.11 20.49 21.09 25.34 34.13 37.28 30.05 17.84 32.01 32.37 59.45 16.47 17.60 26.07 62 E7_De KnownBoundary 0 14.45 46.70 34.77 30.37 53.23 53.15 49.46 18.98 15.19 31.48 8.95 12.00 20.45 40.97 14.59 4.10 21.13 33.33 36.33 39.12 20.14 8.33 11.18 63 ER7h ExonRegion 0 50.79 67.04 87.89 81.99 69.90 63.70 111.27 41.79 26.74 56.59 18.02 30.05 29.18 22.45 22.27 12.35 9.76 12.77 23.59 57.32 5.15 21.94 11.95 64 E7_Ad KnownBoundary 0 65.05 75.05 94.62 100.49 73.17 71.66 105.20 45.76 25.32 66.16 14.21 31.21 33.76 31.49 24.85 11.54 4.77 10.69 12.61 50.88 3.15 27.13 6.66 65 ER7i ExonRegion 1 39.01 55.27 84.26 65.99 58.29 55.72 87.03 32.03 23.34 44.77 16.11 29.60 30.05 21.81 22.39 6.03 13.68 9.33 19.32 42.06 5.31 17.21 9.42 66 IG12 Intergenic 0 12.50 16.59 36.38 21.81 17.17 15.16 24.00 16.08 7.71 17.55 2.48 4.29 3.32 3.38 3.41 1.44 2.14 6.04 5.34 13.40 1.19 2.67 2.50 67 IG12_AR5 ActiveIntergenicRegion 0 35.24 41.01 87.31 52.23 37.44 36.37 52.58 31.82 15.54 37.01 7.56 9.35 6.40 8.51 8.41 3.74 5.62 18.28 15.63 35.39 3.64 6.79 7.53 68 IG12_AR4 ActiveIntergenicRegion 0 1.88 9.31 14.50 14.01 7.19 7.01 16.66 12.96 6.63 9.10 0.00 3.63 2.50 1.01 1.81 0.32 1.07 0.00 1.62 2.98 0.24 2.03 0.00 69 IG12_SR2 SilentIntergenicRegion 0 3.48 4.52 17.00 11.09 10.67 4.76 11.06 14.97 2.97 8.95 0.00 1.16 0.44 0.29 0.67 0.00 0.00 0.17 0.35 1.32 0.00 0.00 0.00 70 IG12_AR2 ActiveIntergenicRegion 0 2.24 5.48 20.42 5.76 7.09 4.55 8.23 6.81 2.69 10.56 0.00 0.55 1.19 1.88 1.27 0.49 0.00 0.00 0.00 2.12 0.00 0.64 0.00 71 IG12_SR1 SilentIntergenicRegion 0 4.02 1.24 18.54 6.11 6.54 1.05 5.70 4.66 8.81 10.74 0.00 3.37 0.00 1.80 1.37 1.32 0.00 0.00 0.00 2.86 0.00 0.00 0.00