Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 INSIG2 Gene 0 83.05 111.45 49.70 94.59 77.39 101.79 83.06 48.74 80.66 85.44 98.93 104.69 64.74 50.69 45.81 30.60 47.75 28.91 19.33 50.26 14.09 61.33 40.32 2 411929 Transcript 0 1.29 1.06 1.12 0.12 0.00 0.00 0.00 0.00 2.90 0.05 3.28 2.64 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 3 471186 Transcript 0 0.00 6.31 2.90 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 1.70 0.00 0.00 0.00 0.00 0.00 4 245787 Transcript 1 29.39 45.81 18.14 22.09 20.26 48.90 26.76 18.37 55.22 42.28 169.89 19.07 13.68 47.26 13.95 33.28 83.18 39.16 19.96 38.14 43.70 33.15 62.05 5 485520 Transcript 0 26.57 58.03 20.38 48.62 36.14 41.44 20.86 17.47 34.89 37.22 9.92 15.54 11.59 6.70 5.90 4.95 5.07 7.81 3.90 20.03 4.41 11.40 6.82 6 467223 Transcript 0 2.70 1.99 1.79 0.00 0.00 0.40 0.29 0.00 0.01 0.47 4.50 0.00 0.00 0.00 0.56 0.00 0.73 0.00 0.69 0.00 0.00 0.00 1.25 7 340599 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 488995 Transcript 0 5.92 1.20 3.23 5.37 2.76 4.83 8.18 2.64 4.07 6.77 15.31 16.74 12.89 4.03 3.62 6.59 3.41 4.59 2.82 5.93 2.92 1.54 0.43 9 479999 Transcript 0 15.73 12.97 13.34 10.25 21.20 23.38 21.43 9.36 9.49 5.52 47.15 20.72 13.00 10.51 4.33 13.58 9.15 2.13 8.47 15.14 3.29 7.78 5.54 10 ER1a ExonRegion 0 1.29 1.06 1.12 0.12 0.00 0.00 0.00 0.00 2.90 0.05 3.28 2.64 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 11 ER1b ExonRegion 1 31.72 47.32 10.85 8.75 21.29 50.33 22.69 7.22 32.85 27.47 69.30 8.79 1.82 24.39 19.75 36.38 38.72 15.66 7.32 42.97 15.03 9.98 67.15 12 E1a_E3a KnownJunction 1 124.24 160.04 26.11 12.09 67.32 133.45 65.45 10.56 62.67 63.37 159.09 23.86 0.00 45.44 27.44 91.09 120.52 64.46 16.57 33.88 40.28 32.76 208.29 13 E1a_E5a KnownJunction 0 3.78 5.92 0.00 5.73 0.00 0.00 10.91 4.68 6.63 11.15 4.84 6.15 13.31 0.00 0.00 7.60 3.93 0.00 0.00 2.68 0.00 0.00 0.00 14 ER2a ExonRegion 0 1.85 0.89 2.39 0.00 0.00 0.80 0.59 0.00 0.01 0.93 6.74 0.00 0.00 0.00 1.12 0.00 1.47 0.00 1.39 0.00 0.00 0.00 2.51 15 E2a_E3a KnownJunction 0 3.56 3.09 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I2_AR2 ActiveIntronRegion 1 0.00 1.86 2.45 1.08 9.92 2.67 13.57 0.00 6.23 4.16 8.70 2.89 0.00 6.56 0.00 0.00 11.69 0.77 5.97 6.56 0.00 2.60 0.61 17 ER3a ExonRegion 1 106.88 141.33 24.51 21.81 86.29 159.31 72.82 20.09 77.19 71.11 214.55 25.98 9.38 83.24 33.36 104.02 100.68 54.05 31.85 49.73 48.21 44.80 197.86 18 ER3b ExonRegion 1 29.39 45.81 18.14 22.09 20.26 48.90 26.76 18.37 55.22 42.28 169.89 19.07 13.68 47.26 13.95 33.28 83.18 39.16 19.96 38.14 43.70 33.15 62.05 19 E3_Ab KnownBoundary 1 17.26 45.52 39.47 39.29 14.60 38.67 27.73 27.40 76.62 80.48 243.64 61.82 39.77 125.32 56.49 110.06 135.02 99.41 78.31 77.28 51.77 74.83 135.81 20 ER3c ExonRegion 1 33.75 75.91 34.57 57.17 53.71 117.94 65.93 29.13 81.52 88.57 173.03 84.17 40.90 95.17 62.94 69.36 72.73 100.25 36.56 72.10 31.59 79.76 113.67 21 E3_Db NovelBoundary 0 13.26 0.00 4.23 10.39 7.39 8.69 3.84 4.27 5.44 11.52 25.22 37.06 5.84 4.77 4.70 8.03 4.77 9.70 38.12 14.57 0.00 0.00 0.00 22 E3b_E5a KnownJunction 1 47.34 101.63 27.23 64.43 48.30 86.09 46.06 19.80 68.89 59.07 124.87 118.09 19.48 88.59 38.45 31.79 78.07 66.86 0.00 52.35 25.14 64.72 88.35 23 I3 Intron 0 11.26 11.96 6.48 13.51 9.95 8.61 19.48 12.47 12.34 14.18 29.86 28.30 29.07 11.12 6.17 8.75 14.93 11.01 5.37 14.70 3.64 3.36 5.10 24 I3_AR1 ActiveIntronRegion 0 3.46 7.82 5.50 5.42 5.78 2.83 17.16 6.38 8.73 10.56 19.61 24.85 19.21 9.15 2.45 5.69 7.19 5.67 5.24 13.85 1.36 3.86 2.92 25 I3_SR1 SilentIntronRegion 0 6.69 8.47 4.24 7.42 6.34 5.97 14.37 9.51 10.50 9.33 24.52 23.49 25.91 10.86 4.65 7.06 14.45 9.83 5.05 15.90 2.92 3.09 4.99 26 I3_AR2 ActiveIntronRegion 0 18.19 15.35 6.15 15.00 11.04 10.75 22.18 15.74 13.68 20.15 34.71 32.71 37.14 9.56 9.49 10.58 16.16 7.49 4.53 15.48 2.36 3.99 3.66 27 I3_SR2 SilentIntronRegion 1 23.63 16.60 12.52 19.92 13.34 15.97 26.63 26.64 18.80 28.04 50.21 33.90 53.55 19.25 11.41 17.30 25.21 28.66 10.85 18.76 9.36 4.17 11.64 28 I3_AR5 ActiveIntronRegion 0 13.07 21.30 6.85 18.04 11.00 5.26 18.58 10.07 10.02 9.75 19.22 33.85 22.21 6.19 9.39 8.68 11.14 6.67 6.42 11.82 2.73 3.11 4.55 29 I3_SR3 SilentIntronRegion 1 9.37 10.99 6.04 16.91 12.23 9.42 20.64 10.07 12.26 12.20 29.31 28.29 22.83 10.02 4.51 6.78 13.73 8.11 3.31 12.55 3.10 2.89 3.64 30 E4_Aa NovelBoundary 0 12.15 3.35 6.15 11.52 0.00 8.40 21.29 11.09 15.97 16.92 33.90 24.16 39.77 2.47 5.19 7.26 3.93 6.18 4.80 9.59 3.15 8.57 7.68 31 ER4a ExonRegion 0 11.83 2.40 6.46 10.74 5.52 9.67 16.35 5.28 8.14 13.54 28.14 33.48 25.78 8.05 7.24 9.41 6.81 9.19 5.63 11.87 5.85 3.07 0.87 32 E4_Da NovelBoundary 0 14.37 18.02 2.99 13.92 12.90 2.10 31.84 11.50 27.89 11.85 28.01 0.00 0.00 2.47 5.19 16.49 17.39 10.86 0.00 5.56 8.22 3.00 4.27 33 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E5_Aa NovelBoundary 0 14.22 3.16 6.21 11.02 12.48 2.90 21.46 10.88 27.55 13.81 28.59 34.06 28.41 3.00 0.00 12.39 22.53 1.87 4.24 12.78 0.00 0.00 0.00 35 ER5a ExonRegion 1 72.72 81.65 28.87 80.97 61.93 112.01 89.35 41.61 91.98 117.22 270.47 115.96 64.53 124.99 74.53 65.72 118.30 75.14 27.29 84.83 38.64 80.11 80.96 36 E5_Da NovelBoundary 0 13.19 5.13 1.45 7.36 15.11 0.00 24.20 13.10 17.25 6.80 28.74 18.76 34.25 4.77 0.00 15.38 38.80 4.15 0.00 8.82 0.00 0.00 8.11 37 E5a_E6b KnownJunction 1 49.86 77.03 53.07 93.23 64.86 168.03 78.08 63.95 108.10 120.91 314.03 137.14 57.30 108.54 98.89 57.51 158.39 81.00 24.66 79.00 55.04 93.14 109.44 38 I5 Intron 0 11.60 11.41 6.89 11.83 13.37 12.63 17.52 9.40 12.38 12.20 31.52 30.15 16.50 8.46 4.77 10.79 13.95 8.71 5.90 10.86 1.78 3.78 6.39 39 I5_SR1 SilentIntronRegion 1 7.14 11.62 2.42 10.09 6.52 12.59 15.61 7.29 14.10 11.15 30.69 32.08 13.16 6.47 3.76 9.04 14.68 3.84 9.18 10.10 0.90 2.41 5.76 40 I5_AR1 ActiveIntronRegion 1 8.41 11.41 4.80 8.93 13.26 6.38 11.32 7.19 11.86 7.55 26.11 28.46 11.13 10.25 2.83 12.67 18.27 14.23 4.97 7.98 2.35 3.43 6.89 41 I5_SR2 SilentIntronRegion 1 13.76 10.90 7.73 9.92 13.94 8.60 11.13 9.60 10.33 13.27 26.98 28.72 16.83 8.99 4.97 8.42 11.23 3.72 5.68 12.49 1.24 5.07 6.84 42 I5_AR2 ActiveIntronRegion 1 13.39 12.09 9.86 15.12 17.74 16.47 23.91 11.30 12.36 15.08 36.97 30.49 20.14 8.98 6.21 11.47 12.86 11.22 4.85 12.53 2.39 3.89 6.63 43 I5_SR3 SilentIntronRegion 0 28.03 5.66 11.35 11.61 9.19 21.61 20.95 13.60 12.81 9.98 27.67 30.01 26.14 4.17 5.68 13.65 8.78 3.12 2.83 7.90 0.15 7.66 3.65 44 E6_Aa NovelBoundary 0 14.67 13.94 12.03 22.11 3.90 19.59 20.40 15.81 23.09 13.43 40.33 67.97 6.33 17.07 8.90 10.85 8.60 14.67 0.00 18.60 0.00 11.21 6.40 45 ER6a ExonRegion 0 15.73 12.97 13.34 10.25 21.20 23.38 21.43 9.36 9.49 5.52 47.15 20.72 13.00 10.51 4.33 13.58 9.15 2.13 8.47 15.14 3.29 7.78 5.54 46 E6_Ab KnownBoundary 0 27.19 11.71 19.46 24.97 39.30 19.87 37.05 22.63 18.08 15.28 72.81 72.47 20.45 16.95 9.64 22.30 12.53 2.16 0.00 16.36 8.65 5.82 8.45 47 ER6b ExonRegion 0 75.26 87.25 63.59 106.91 104.87 146.67 103.16 65.59 118.94 132.72 293.20 170.52 90.27 136.89 94.47 83.13 147.63 69.96 39.26 97.88 41.64 77.57 90.58 48 E6_Da NovelBoundary 0 3.78 5.92 10.85 20.78 14.18 5.74 28.22 9.94 16.23 19.07 41.48 6.30 6.82 7.65 0.00 4.36 13.18 2.11 0.00 11.89 0.00 3.00 3.59 49 E6a_E7a KnownJunction 1 86.76 110.51 70.99 117.07 50.68 127.43 126.88 66.17 116.23 126.60 365.93 152.60 55.19 117.37 118.55 45.03 131.46 42.08 21.18 72.10 39.11 88.48 58.90 50 E6a_E8a KnownJunction 0 0.00 6.31 2.90 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 1.70 0.00 0.00 0.00 0.00 0.00 51 I6 Intron 0 13.93 8.36 6.01 8.91 19.81 9.55 18.51 3.53 10.09 11.25 16.96 11.52 8.47 6.10 1.12 4.89 2.72 6.56 2.62 5.25 0.60 1.14 0.81 52 I6_AR1 ActiveIntronRegion 0 14.08 8.45 6.07 9.01 20.02 9.66 18.70 3.57 10.20 11.37 17.13 11.65 8.56 6.17 1.14 4.94 2.74 6.63 2.65 5.31 0.61 1.15 0.81 53 E7_Aa NovelBoundary 0 30.01 11.97 13.13 7.39 27.50 10.11 35.07 25.55 19.24 15.07 36.96 13.95 0.00 7.30 4.57 0.00 4.11 4.23 4.80 10.16 0.00 3.12 4.10 54 ER7a ExonRegion 0 56.99 76.97 62.63 108.11 56.80 122.31 120.46 57.50 108.46 120.97 319.44 187.64 117.60 116.54 112.55 56.25 125.25 62.54 33.60 66.24 23.37 77.40 66.71 55 E7_Da KnownBoundary 0 67.20 120.50 76.49 128.52 92.36 154.57 158.90 63.17 125.58 118.92 252.96 220.42 149.50 127.49 124.85 62.21 147.64 74.33 53.93 72.87 5.93 82.30 87.50 56 ER7b ExonRegion 0 85.38 113.75 75.03 108.57 80.04 124.50 127.83 59.14 105.09 118.52 243.63 145.91 122.24 127.79 86.42 74.30 109.98 58.38 48.73 99.46 11.82 86.40 74.92 57 E7_Db NovelBoundary 0 22.97 9.34 11.65 5.46 23.43 0.00 17.93 11.01 10.07 11.34 27.01 12.30 13.47 5.12 0.00 0.00 4.77 0.00 0.00 19.05 3.15 0.00 0.00 58 E7b_E8a KnownJunction 0 115.35 113.60 81.64 111.51 102.21 137.48 146.36 76.64 107.90 133.07 271.28 164.30 128.40 103.66 93.08 88.35 100.33 31.88 30.12 125.53 21.93 127.79 76.31 59 I7 Intron 0 17.77 18.93 14.19 6.14 18.36 10.38 15.82 11.50 9.71 10.82 27.45 15.59 13.65 5.84 5.10 1.14 7.28 3.22 1.83 5.51 0.00 1.40 0.85 60 I7_AR1 ActiveIntronRegion 1 13.92 10.99 14.44 6.75 26.25 13.77 17.53 12.31 10.27 11.37 26.36 10.63 16.51 6.26 5.67 0.71 6.22 2.88 2.44 3.12 0.00 2.00 0.46 61 I7_SR1 SilentIntronRegion 1 20.40 24.30 14.07 5.75 13.15 8.15 14.72 10.99 9.37 10.49 28.26 18.96 11.78 5.58 4.74 1.43 8.02 3.46 1.44 7.13 0.00 1.00 1.11 62 E8_Aa NovelBoundary 0 7.41 34.60 19.04 3.83 12.14 26.29 18.95 19.67 6.19 12.09 21.95 0.00 29.22 2.47 4.45 0.00 0.00 2.11 0.00 3.26 0.00 6.00 0.00 63 E8_Ab NovelBoundary 0 140.54 153.00 81.87 121.86 178.10 214.59 181.38 88.97 125.37 120.53 304.97 203.02 128.89 95.36 110.51 48.96 131.65 27.77 8.66 93.06 18.16 119.65 53.10 64 ER8a ExonRegion 0 101.39 117.56 79.94 118.25 120.66 161.72 140.66 76.63 113.81 127.20 307.05 186.17 116.80 99.38 105.96 76.85 124.96 31.94 19.72 108.61 18.99 124.12 68.24 65 ER8b ExonRegion 0 119.37 118.35 88.72 122.11 140.21 186.31 152.52 90.23 111.41 135.56 312.74 229.46 115.37 90.63 117.79 53.50 124.77 29.56 6.37 95.32 15.43 122.09 55.80 66 ER8c ExonRegion 0 111.42 125.36 96.56 143.08 148.46 182.23 160.51 92.10 124.35 141.34 287.62 185.47 144.97 93.15 103.82 35.98 106.87 27.55 12.91 81.12 12.08 113.89 46.99 67 E8_Db KnownBoundary 1 68.60 85.05 53.81 88.73 100.59 87.45 127.50 54.59 62.47 81.50 185.99 66.77 93.18 76.58 85.17 23.24 82.75 11.81 7.91 54.20 7.10 76.48 44.39 68 E8_Dc KnownBoundary 1 41.12 46.77 12.74 27.94 60.02 60.65 60.55 7.64 33.65 24.98 106.55 93.48 27.27 19.37 32.26 12.99 51.99 6.30 9.32 35.03 0.00 62.15 8.71 69 E8_Dd KnownBoundary 0 87.05 144.91 80.75 116.14 69.02 67.69 102.81 92.09 106.71 109.33 200.37 136.69 102.27 80.99 64.16 35.80 84.53 28.60 12.71 76.32 6.18 101.22 38.33 70 ER8d ExonRegion 1 91.43 138.49 105.50 154.96 128.70 127.82 143.38 93.51 125.98 151.51 282.01 230.76 168.84 113.85 105.03 36.56 119.49 28.82 17.20 80.64 8.81 132.10 53.45 71 ER8e ExonRegion 0 86.19 134.33 104.29 152.72 109.41 102.79 131.73 103.71 142.38 158.02 275.22 249.91 134.71 100.15 89.78 39.13 110.58 33.77 16.10 87.00 4.41 132.30 44.70 72 ER8f ExonRegion 0 87.44 158.01 82.96 140.70 75.79 103.45 126.64 95.24 131.63 128.11 175.12 219.45 119.08 86.06 69.29 43.15 79.86 36.93 22.30 69.69 8.70 148.74 45.80 73 E8_De KnownBoundary 1 49.71 155.04 95.86 144.97 90.66 122.77 120.34 69.29 110.10 108.63 68.23 88.53 59.09 16.89 16.81 12.39 50.21 12.68 3.86 52.48 0.00 160.92 24.67 74 ER8g ExonRegion 0 152.35 188.57 80.03 155.07 127.03 155.73 138.07 80.08 120.11 125.32 93.15 172.72 107.81 59.17 66.34 33.51 51.44 26.19 26.50 64.19 12.72 96.15 44.01 75 E8_Df KnownBoundary 0 37.86 72.42 17.12 34.29 58.57 62.86 27.95 19.06 10.56 16.71 7.21 5.55 0.00 2.12 0.00 6.32 4.77 1.66 4.80 12.85 2.66 18.43 7.68 76 E8_Dg KnownBoundary 0 17.34 25.59 16.71 26.67 7.72 4.54 16.43 8.21 23.47 13.81 0.00 7.65 0.00 7.30 6.30 4.36 3.74 0.00 0.00 27.68 0.00 6.25 3.67 77 ER8h ExonRegion 0 34.39 71.94 24.66 53.66 37.13 43.09 24.33 17.72 35.97 25.23 4.11 17.32 14.07 9.34 9.43 2.97 6.60 1.85 3.19 28.72 2.48 14.32 15.42 78 ER8i ExonRegion 0 26.57 58.03 20.38 48.62 36.14 41.44 20.86 17.47 34.89 37.22 9.92 15.54 11.59 6.70 5.90 4.95 5.07 7.81 3.90 20.03 4.41 11.40 6.82