Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACTR3 Gene 0 224.27 153.79 94.51 76.11 173.54 115.78 149.04 115.54 76.38 88.80 452.75 457.22 478.59 425.31 327.98 288.85 366.79 62.23 42.89 86.91 84.66 169.89 75.57 2 263238 Transcript 0 562.86 280.16 291.16 215.45 574.18 515.02 504.28 319.95 224.89 280.52 1917.89 1693.61 2034.00 1865.27 1103.78 1438.62 1543.68 279.60 154.31 331.75 306.43 564.54 337.16 3 443297 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 5.81 4.10 17.95 0.00 0.00 0.00 0.00 0.00 0.00 4 415792 Transcript 0 3.68 0.00 1.16 2.31 2.37 0.00 6.22 1.19 0.69 0.00 1.91 4.11 10.66 0.73 1.81 2.67 6.11 1.94 0.00 1.14 0.47 0.52 0.48 5 446821 Transcript 0 0.00 5.53 3.10 0.00 0.00 7.84 4.15 1.81 1.62 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 1.82 0.00 0.00 8.59 0.00 0.00 6 489779 Transcript 1 8.74 7.17 12.42 3.62 19.87 2.19 20.59 12.77 5.62 5.97 9.91 32.71 18.59 3.82 11.17 23.94 25.15 3.24 1.92 8.14 4.61 7.10 7.01 7 484165 Transcript 1 14.19 15.18 5.02 4.04 21.87 9.06 26.05 7.44 7.56 3.64 11.21 25.35 49.27 11.19 15.66 18.56 19.51 2.77 2.62 9.44 6.34 6.86 7.88 8 478928 Transcript 1 36.06 27.76 17.15 22.84 44.65 17.75 53.08 28.86 20.95 18.65 24.14 58.22 76.79 18.53 31.40 52.51 50.30 20.97 13.24 28.28 12.35 16.78 17.39 9 IG32_AR2 ActiveIntergenicRegion 0 6.42 1.62 1.42 1.11 3.47 0.00 5.09 0.08 0.27 2.08 6.25 11.30 9.60 11.77 12.60 9.06 10.93 2.66 1.84 4.55 2.10 0.00 0.00 10 IG32_AR3 ActiveIntergenicRegion 0 5.77 0.00 3.68 2.73 6.81 0.00 3.97 1.73 2.36 3.44 8.43 13.78 18.76 5.91 25.06 7.03 17.70 5.54 8.11 12.19 2.20 0.00 0.00 11 IG32_SR3 SilentIntergenicRegion 0 5.82 1.93 1.76 3.87 6.89 2.45 5.67 4.85 2.27 1.87 8.98 28.70 16.00 12.75 11.22 14.76 19.45 4.96 1.36 6.01 3.33 0.57 1.61 12 IG32_AR4 ActiveIntergenicRegion 0 3.99 1.54 2.36 1.48 1.74 2.22 5.11 1.35 1.52 1.50 4.50 11.79 5.37 9.71 11.26 10.95 10.25 5.41 3.96 4.08 1.71 0.54 1.37 13 ER1a ExonRegion 0 6.65 6.94 4.48 8.95 10.83 67.80 26.89 5.17 6.59 5.54 35.63 1.75 10.15 35.39 19.14 31.49 35.07 74.48 41.38 24.55 19.58 8.59 21.52 14 E1_Ab KnownBoundary 0 7.11 15.72 7.60 5.19 0.00 32.03 8.13 1.56 5.99 3.47 36.96 0.00 14.28 23.19 17.80 7.43 61.34 6.43 31.81 9.40 12.42 3.12 10.93 15 E1_Ac KnownBoundary 0 3.78 12.89 0.00 1.50 12.22 5.45 13.03 0.00 0.00 3.04 22.37 0.00 0.00 0.00 8.90 13.07 14.31 27.77 4.52 18.47 11.98 6.12 7.94 16 ER1b ExonRegion 0 15.10 27.72 6.54 5.72 16.23 29.16 24.67 12.39 13.67 10.90 66.56 2.31 9.69 33.13 47.77 32.50 70.09 30.24 30.79 40.00 43.19 21.67 49.53 17 E1_Ad KnownBoundary 0 27.78 25.26 22.15 7.92 25.38 22.71 36.61 21.89 24.45 30.60 91.44 0.00 0.00 22.72 78.00 64.43 48.99 88.05 19.20 53.75 59.49 24.98 47.38 18 ER1c ExonRegion 1 79.58 74.02 22.79 12.54 52.98 130.93 108.56 22.12 25.69 41.98 243.93 6.93 14.07 177.03 214.69 197.94 264.73 72.80 65.62 124.68 192.60 93.76 189.12 19 ER1d ExonRegion 1 119.51 68.25 61.24 38.36 88.19 161.81 118.04 71.93 61.03 74.46 838.02 90.75 302.62 748.74 413.15 565.54 874.96 175.04 89.88 166.43 333.86 172.85 207.93 20 E1a_E2a KnownJunction 1 76.68 136.88 172.58 146.30 181.58 279.21 170.64 241.97 133.07 167.27 1651.63 432.74 2276.64 1917.90 917.98 1849.26 1537.63 595.19 189.65 303.73 423.55 383.02 572.02 21 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 5.81 4.10 17.95 0.00 0.00 0.00 0.00 0.00 0.00 22 I1_AR2 ActiveIntronRegion 0 54.80 4.37 4.03 3.00 33.18 4.60 16.17 4.53 5.42 2.64 43.12 9.05 10.32 24.98 38.01 52.46 54.30 3.84 4.91 8.19 11.97 0.00 6.52 23 ER2a ExonRegion 0 117.28 159.09 165.18 146.63 178.80 267.80 218.08 238.09 178.89 191.33 1961.86 820.51 1494.86 2068.49 1119.57 1804.56 1604.35 495.69 165.13 361.05 394.62 474.19 516.90 24 E2a_E3a KnownJunction 0 259.45 250.48 188.61 148.57 257.89 279.10 283.39 266.49 227.78 236.28 1887.85 864.13 1313.39 2155.41 1163.61 1601.37 1390.84 324.50 121.89 418.91 374.49 567.88 483.92 25 E2a_E4a KnownJunction 0 0.00 5.53 3.10 0.00 0.00 7.84 4.15 1.81 1.62 0.00 0.00 0.00 0.00 0.00 0.00 3.59 0.00 1.82 0.00 0.00 8.59 0.00 0.00 26 E2a_E5a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 3.80 0.00 1.39 0.00 0.00 0.00 7.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 210.23 266.45 207.00 180.25 356.00 389.62 346.16 286.16 252.94 280.90 2499.58 992.35 1361.72 1875.23 961.68 1181.46 1952.15 302.72 151.62 387.39 465.32 555.80 309.97 28 E3a_E4a KnownJunction 0 305.91 375.06 230.21 212.83 385.14 354.80 486.10 334.01 309.75 311.30 2428.14 1338.89 1762.22 1829.60 976.82 1206.26 2011.69 289.14 136.76 337.99 434.79 687.35 270.86 29 E4_Ab NovelBoundary 0 483.79 425.38 282.19 262.64 324.45 482.28 408.15 343.13 318.78 317.08 2376.23 1810.94 3071.23 2383.08 1038.01 1491.40 2153.53 302.73 193.23 414.69 430.77 765.30 366.98 30 ER4a ExonRegion 0 338.56 370.11 249.49 230.06 328.05 403.29 404.23 332.76 311.84 322.00 2562.41 1615.24 2398.48 2102.97 1038.42 1358.14 2191.66 300.96 171.75 380.85 461.54 736.98 319.98 31 ER4b ExonRegion 0 514.34 418.78 266.35 265.65 475.01 472.01 483.63 340.12 329.47 360.67 3088.57 2498.45 2962.90 2724.10 1390.68 1656.10 2419.36 363.58 207.20 465.66 415.68 814.75 424.00 32 E4a_E5a KnownJunction 0 744.35 453.27 276.57 321.80 842.95 728.39 803.10 385.77 365.94 353.18 2860.78 3009.68 3044.12 3223.81 1744.98 1809.27 2595.98 393.14 225.89 483.28 534.07 942.14 470.44 33 E5_Aa NovelBoundary 0 23.41 32.56 4.70 15.35 28.86 0.00 28.09 3.41 10.36 27.00 9.53 52.07 65.42 12.89 14.09 8.72 8.32 0.00 8.38 22.95 3.15 2.33 0.00 34 ER5a ExonRegion 0 405.97 354.46 289.74 296.54 722.65 640.23 665.15 369.64 350.65 356.24 3038.80 2687.03 3091.55 3137.73 1438.60 1843.92 2482.85 432.99 254.88 477.64 605.92 843.98 457.86 35 E5_Da NovelBoundary 1 452.15 401.44 309.30 317.94 662.65 627.03 682.31 362.15 355.20 396.21 2996.76 3051.69 3329.81 3643.02 1493.54 2060.83 2535.48 550.38 320.86 656.94 730.39 837.80 492.89 36 E5b_E6b KnownJunction 0 251.67 325.53 319.50 284.11 368.51 406.19 383.16 376.36 349.07 423.24 2282.53 2414.29 1741.28 1868.45 1180.17 1138.08 2050.21 216.55 104.38 504.56 683.88 703.94 234.75 37 ER5b ExonRegion 0 280.63 328.31 300.62 283.43 449.53 458.59 445.24 352.67 334.30 402.65 2683.72 2589.50 2358.22 2644.67 1258.61 1496.96 2276.76 335.20 207.05 566.98 708.21 758.56 328.14 38 E6_Aa NovelBoundary 0 56.38 45.72 5.06 15.05 48.13 5.79 28.04 21.40 18.69 2.95 11.85 22.96 26.46 15.95 6.06 23.93 64.80 7.46 8.09 32.53 20.14 0.00 37.39 39 ER6a ExonRegion 0 14.19 15.18 5.02 4.04 21.87 9.06 26.05 7.44 7.56 3.64 11.21 25.35 49.27 11.19 15.66 18.56 19.51 2.77 2.62 9.44 6.34 6.86 7.88 40 E6_Ab KnownBoundary 0 29.71 30.19 7.45 11.82 50.17 44.52 54.06 21.19 2.63 2.66 12.90 30.16 21.75 15.01 35.23 7.78 34.50 8.79 9.32 6.26 14.46 9.06 23.73 41 ER6b ExonRegion 0 370.79 359.47 284.84 259.39 431.07 412.96 448.15 367.92 333.82 380.09 2450.97 2572.55 3034.80 2868.36 1399.52 1680.25 2383.96 363.66 194.25 456.77 749.84 684.13 374.79 42 E6_Da KnownBoundary 0 21.49 8.95 15.73 4.73 18.76 10.45 8.30 15.90 6.92 5.91 6.90 12.15 19.32 2.41 13.47 38.37 17.95 6.18 0.00 5.11 5.50 8.57 0.00 43 E6a_E7a KnownJunction 0 667.01 472.88 271.37 282.68 570.46 441.28 523.11 365.72 328.21 432.07 3377.70 1934.13 2538.31 2982.83 1410.97 1469.10 2831.60 417.93 284.24 453.17 911.83 620.48 405.99 44 ER6c ExonRegion 0 8.74 7.17 12.42 3.62 19.87 2.19 20.59 12.77 5.62 5.97 9.91 32.71 18.59 3.82 11.17 23.94 25.15 3.24 1.92 8.14 4.61 7.10 7.01 45 ER7a ExonRegion 0 887.89 510.81 337.39 291.32 639.06 607.33 640.14 412.96 330.25 435.34 3382.94 2576.42 3230.29 3173.91 1578.30 1937.25 2789.49 468.17 260.51 467.52 740.00 854.60 468.21 46 E7_Da KnownBoundary 0 7.41 0.00 0.00 3.30 11.46 0.00 14.49 1.93 0.00 0.00 6.69 6.30 6.17 0.00 0.00 4.19 8.60 3.61 0.00 2.62 3.03 3.00 3.84 47 E7a_E8a KnownJunction 0 871.04 669.49 319.71 332.09 693.12 755.08 882.68 533.14 384.95 514.00 3284.09 2432.29 3369.75 3079.83 2146.24 2175.24 2809.16 483.01 241.80 480.40 516.64 992.78 522.25 48 E7_Db KnownBoundary 0 6.52 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 1.45 0.00 0.00 6.33 0.00 5.69 0.00 12.44 1.91 0.00 3.07 0.00 0.00 0.00 49 E7b_E8a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.15 0.00 0.00 50 ER7b ExonRegion 0 12.70 0.00 3.68 6.81 13.38 3.67 17.21 5.19 0.00 2.29 34.79 25.98 60.97 16.24 23.21 29.72 39.61 12.93 0.00 4.26 2.20 14.58 2.94 51 ER7c ExonRegion 0 7.35 0.00 2.33 2.56 4.75 0.00 8.64 2.38 0.00 0.00 3.82 8.23 13.37 1.46 3.63 5.35 12.21 3.88 0.00 2.29 0.94 1.04 0.95 52 ER8a ExonRegion 0 701.97 521.18 315.06 289.55 1029.12 836.88 944.47 443.92 338.26 451.94 3124.52 2247.44 2852.15 2471.91 1440.91 1455.26 2277.62 275.91 177.22 403.98 356.66 785.35 328.94 53 E8_Da KnownBoundary 0 1127.16 557.40 403.45 366.15 1488.54 983.75 1039.41 560.70 380.44 487.20 3398.76 2577.54 3317.64 2420.99 1696.28 1435.95 2460.87 205.11 181.18 481.04 366.59 1052.48 293.65 54 ER8b ExonRegion 0 765.00 450.66 391.95 329.83 985.12 814.15 745.55 541.51 381.83 500.06 3210.66 3735.35 4741.48 3325.23 1836.37 1841.86 2217.25 315.39 258.80 452.77 281.28 1033.04 499.11 55 E8_Db NovelBoundary 0 85.72 32.95 2.93 13.98 42.78 17.32 85.23 10.19 10.50 4.59 12.48 43.66 91.23 2.12 0.00 20.42 21.88 0.00 4.42 8.82 2.59 3.12 15.37 56 E8b_E9b KnownJunction 0 698.64 373.03 442.24 292.77 825.30 852.07 761.67 562.63 332.03 489.96 3157.43 2985.97 3354.33 2966.70 1529.39 1638.20 2260.59 323.67 216.76 498.43 323.59 702.53 419.47 57 I8 Intron 0 53.90 17.36 13.51 13.01 41.80 8.10 38.90 15.84 11.83 8.31 10.99 38.28 48.54 6.36 29.33 34.11 28.12 8.55 6.60 12.28 5.63 5.42 8.63 58 I8_SR1 SilentIntronRegion 0 55.45 17.36 17.06 15.70 46.47 11.37 43.80 18.92 15.16 9.07 16.01 34.46 42.67 8.48 36.53 43.42 43.03 11.48 9.06 15.90 8.98 6.28 11.97 59 I8_AR11 ActiveIntronRegion 0 46.07 8.74 10.52 12.65 20.60 4.89 34.30 15.94 12.80 8.62 6.88 34.56 69.96 4.76 29.46 33.45 15.61 10.09 6.61 9.78 3.26 4.63 4.79 60 I8_SR2 SilentIntronRegion 0 103.55 23.66 19.50 12.62 75.50 8.18 53.81 16.01 8.80 10.35 7.09 44.69 54.62 6.12 39.41 33.63 14.20 8.36 5.58 10.51 3.86 5.65 12.64 61 E9_Aa NovelBoundary 0 233.67 184.18 1310.81 774.59 241.43 134.01 424.32 615.78 590.33 554.59 69.65 58.52 78.57 18.07 44.63 191.57 206.64 501.17 183.53 342.15 124.23 50.21 157.07 62 ER9a ExonRegion 0 44.42 33.98 18.63 26.00 52.34 16.95 56.35 26.39 17.40 18.84 19.66 51.53 69.89 22.67 43.80 65.23 55.77 27.77 18.94 32.55 15.93 11.20 24.12 63 E9_Ab KnownBoundary 0 26.82 8.95 7.21 12.35 97.20 0.00 81.22 33.64 11.60 16.28 12.63 48.92 52.59 14.60 22.87 28.71 16.64 12.48 0.00 11.06 5.75 7.78 0.00 64 ER9b ExonRegion 0 620.14 344.82 487.91 375.21 731.03 696.76 631.46 512.45 340.66 447.09 3198.84 2738.20 2891.86 2389.57 1405.81 2201.47 2379.26 459.75 219.48 411.89 447.59 850.60 392.97 65 E9a_E10a KnownJunction 0 768.73 335.93 636.29 402.21 592.28 641.34 571.77 542.30 376.30 471.29 3075.57 2870.44 2839.91 2540.30 1698.87 2223.01 3019.26 451.97 228.52 442.56 559.09 791.69 430.40 66 ER10a ExonRegion 0 1279.48 517.43 551.67 360.60 1023.07 782.33 908.75 565.85 377.12 485.14 3489.43 3118.73 3591.19 3631.27 1949.07 2249.90 3099.67 513.89 312.04 455.79 773.83 766.21 568.66 67 E10_Da KnownBoundary 0 27.71 9.47 6.50 16.85 47.20 5.45 37.10 24.07 11.11 12.06 11.11 123.04 75.32 12.36 13.35 38.02 41.89 13.68 12.33 11.70 8.34 7.78 7.60 68 E10a_E10b KnownJunction 0 1610.29 583.71 697.91 495.81 1324.87 1057.97 1168.24 505.01 373.46 431.89 3187.28 2487.36 2699.50 2685.57 2047.85 3496.09 3330.06 634.20 283.30 578.07 835.97 1039.81 585.51 69 ER10b ExonRegion 0 27.70 21.54 15.67 19.67 36.96 18.55 49.81 31.33 24.50 18.46 28.63 64.91 83.70 14.40 19.00 39.79 44.83 14.17 7.53 24.02 8.76 22.36 10.67 70 E10_Ab KnownBoundary 0 35.56 18.68 39.27 25.77 102.38 32.25 63.82 31.79 23.35 12.92 26.32 115.24 135.38 9.54 24.48 40.25 54.51 11.11 4.61 11.82 5.56 14.76 3.76 71 ER10c ExonRegion 0 833.37 492.15 564.78 395.84 885.19 866.41 795.29 481.47 321.92 391.45 2900.49 2168.18 2176.06 2990.86 1926.64 2657.62 2678.18 566.24 280.54 440.50 781.41 752.65 467.63 72 E10b_E11a KnownJunction 0 1165.47 654.49 666.98 426.62 863.84 896.02 826.28 557.29 358.53 435.00 2985.18 1956.34 2252.61 3005.19 2421.05 2440.13 2978.96 543.12 376.01 408.37 921.78 684.53 615.72 73 I10_AR1 ActiveIntronRegion 0 14.81 11.32 8.92 11.39 20.37 9.10 32.79 15.14 9.40 6.97 13.35 49.95 37.36 3.45 11.92 12.30 19.87 4.48 1.96 11.90 4.37 11.45 5.49 74 E11_Aa NovelBoundary 0 65.79 6.64 16.32 25.74 29.03 13.74 45.09 19.63 7.35 0.99 18.37 32.56 57.30 2.12 13.35 30.25 31.88 22.09 4.80 5.56 2.72 18.06 7.51 75 ER11a ExonRegion 0 1331.50 956.75 445.51 331.68 761.53 395.62 526.39 479.99 251.44 350.74 1321.02 1683.83 1354.95 1282.62 1558.25 771.18 899.36 113.13 140.18 252.50 186.63 715.07 203.06 76 E11_Da KnownBoundary 1 43.42 36.31 21.38 31.43 98.47 23.96 126.22 45.88 19.39 23.02 43.33 257.33 279.53 94.59 57.61 62.80 35.44 5.55 9.13 31.06 0.00 87.93 17.50 77 ER11b ExonRegion 0 37.14 16.15 21.78 16.76 41.07 19.04 39.93 38.87 27.64 19.40 28.47 87.08 85.18 23.31 26.34 22.69 28.29 5.37 3.74 17.76 3.67 35.38 13.44 78 IG33_SR1 SilentIntergenicRegion 0 1.65 2.61 0.04 1.12 1.87 1.00 3.66 0.37 1.72 0.75 0.96 17.64 20.09 0.68 0.79 4.93 5.02 0.48 1.39 5.76 0.72 0.36 1.54 79 IG33_AR2 ActiveIntergenicRegion 0 2.47 1.61 2.11 1.13 3.62 1.81 4.90 2.70 1.36 0.31 2.21 9.51 16.71 0.70 3.11 3.01 7.01 0.00 0.57 5.36 0.85 2.11 2.11