Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC116050.1 Gene 0 2.74 9.04 10.32 42.05 157.84 315.70 114.71 242.07 22.06 219.05 0.00 0.34 0.33 0.37 0.31 0.00 0.00 18.89 18.64 9.70 4.46 1.35 3.22 2 443031 Transcript 0 1.41 4.23 6.05 20.58 100.70 202.10 71.59 136.05 10.31 131.65 0.00 0.00 0.00 0.51 0.03 0.00 0.00 8.22 9.98 5.64 3.32 1.04 2.12 3 439358 Transcript 0 1.53 1.13 3.70 13.29 173.63 380.08 139.46 94.00 6.07 136.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 3.01 2.98 1.47 0.93 0.16 4 IG7 Intergenic 0 3.64 1.67 4.94 12.77 46.87 25.76 8.54 24.25 14.39 17.60 0.20 0.07 0.12 0.51 0.35 0.31 0.24 5.47 6.34 5.14 0.25 1.69 0.61 5 IG7_SR1 SilentIntergenicRegion 0 3.54 0.86 2.85 9.58 54.24 17.15 5.32 13.47 12.86 4.17 0.14 0.00 0.29 0.30 0.31 0.00 0.00 4.81 4.70 2.98 0.00 0.62 0.00 6 IG7_AR1 ActiveIntergenicRegion 0 16.14 6.64 27.76 44.57 166.91 86.63 19.75 60.73 60.10 23.39 1.47 0.34 0.74 4.30 2.64 2.83 2.20 29.66 19.94 22.85 1.47 11.73 4.01 7 IG7_SR2 SilentIntergenicRegion 0 6.61 0.13 20.41 40.03 221.25 122.12 16.30 91.39 66.93 20.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.18 16.13 11.84 0.00 0.00 3.40 8 IG7_AR2 ActiveIntergenicRegion 0 6.95 0.51 5.51 11.41 125.94 46.54 10.72 21.12 14.41 8.44 0.16 0.00 0.00 0.00 0.17 0.00 0.00 1.88 3.37 8.53 0.00 2.30 1.24 9 IG7_SR3 SilentIntergenicRegion 0 0.78 1.23 1.13 7.89 6.76 11.91 6.78 20.18 6.16 21.38 0.00 0.06 0.00 0.00 0.00 0.00 0.00 2.01 4.80 1.78 0.15 0.07 0.00 10 ER1a ExonRegion 0 0.00 1.04 0.47 2.62 7.28 22.06 7.62 33.26 4.24 38.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 1.62 0.27 0.28 0.00 0.00 11 E1_Da NovelBoundary 0 0.00 2.76 2.81 16.61 53.74 99.83 45.36 134.23 11.92 162.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.31 11.95 8.31 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.35 0.00 6.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I1 Intron 0 1.68 5.22 3.94 32.15 55.61 61.60 43.75 79.33 14.08 71.22 0.00 0.12 0.00 0.03 0.03 0.00 0.00 3.68 11.30 3.46 1.19 0.32 0.94 14 I1_SR1 SilentIntronRegion 0 1.69 5.22 3.94 32.16 55.64 61.62 43.77 79.36 14.09 71.25 0.00 0.12 0.00 0.03 0.03 0.00 0.00 3.68 11.31 3.46 1.19 0.32 0.94 15 E2_Aa NovelBoundary 0 17.78 12.37 1.83 77.01 133.87 258.66 109.66 117.35 26.45 100.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 9.32 8.25 0.00 2.88 0.00 16 ER2a ExonRegion 0 5.36 7.36 11.25 44.65 219.28 325.71 124.90 215.80 13.92 199.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.98 0.00 13.04 0.00 0.75 0.00 17 E2_Da NovelBoundary 0 8.67 15.92 5.14 55.74 38.79 24.76 50.96 33.56 17.62 18.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.76 17.60 5.88 2.53 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 2.60 5.87 1.64 29.18 21.13 12.66 23.55 17.35 14.35 17.47 0.00 0.20 0.00 0.18 0.00 0.10 0.00 5.00 13.00 4.38 2.20 0.21 2.83 20 I2_SR1 SilentIntronRegion 0 2.60 5.88 1.64 29.22 21.16 12.67 23.58 17.37 14.37 17.49 0.00 0.20 0.00 0.18 0.00 0.10 0.00 5.01 13.02 4.38 2.20 0.21 2.83 21 E3_Aa NovelBoundary 0 3.19 0.00 2.72 34.66 15.79 25.04 56.53 61.94 20.83 30.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.02 22.12 6.46 0.00 6.25 4.18 22 ER3a ExonRegion 0 0.82 10.12 8.00 16.40 147.88 262.37 105.81 143.91 9.52 137.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.26 7.12 8.98 0.00 0.00 0.00 23 E3_Da NovelBoundary 0 0.00 5.79 2.93 30.70 66.55 37.54 70.26 48.88 20.37 57.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 29.84 9.46 0.00 0.00 4.27 24 E3a_E4a KnownJunction 0 0.00 3.29 12.77 37.06 297.88 679.95 219.31 424.75 8.07 443.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.78 4.14 9.27 0.00 0.00 0.00 25 I3 Intron 0 1.74 5.48 1.87 21.08 28.84 29.74 39.41 41.84 10.01 33.39 0.00 0.00 0.00 0.18 0.00 0.07 0.00 4.36 9.62 3.93 1.15 0.73 1.47 26 I3_SR1 SilentIntronRegion 0 1.74 5.49 1.87 21.10 28.87 29.76 39.45 41.88 10.02 33.42 0.00 0.00 0.00 0.18 0.00 0.07 0.00 4.36 9.63 3.93 1.16 0.73 1.47 27 E4_Aa NovelBoundary 0 2.82 15.66 1.83 24.41 46.86 43.33 70.26 95.05 12.62 62.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.74 18.35 2.62 0.00 0.00 0.00 28 ER4a ExonRegion 0 1.57 7.13 11.18 48.98 205.22 442.96 148.75 354.46 18.48 312.73 0.00 0.00 0.00 0.15 0.23 0.00 0.00 19.84 21.22 9.81 3.26 0.12 2.17 29 E4_Ab KnownBoundary 0 0.00 9.80 7.66 80.68 352.97 556.21 263.61 459.99 27.98 370.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 18.17 12.34 2.72 0.00 0.00 30 ER4b ExonRegion 0 0.00 7.83 3.23 32.77 245.31 527.24 202.17 221.21 16.77 224.89 0.00 0.00 0.00 0.07 0.00 0.00 0.00 4.95 4.07 8.10 0.19 0.09 0.06 31 E4_Da NovelBoundary 0 3.41 3.35 10.85 33.50 154.24 348.10 206.95 142.20 14.96 139.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.73 29.84 0.00 5.75 0.00 0.00 32 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E4_Db NovelBoundary 0 2.89 0.00 3.37 33.50 36.67 100.96 62.67 73.77 13.80 60.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 24.47 7.80 5.37 0.00 3.41 34 E4b_E5b KnownJunction 0 0.00 0.00 6.00 21.01 264.01 554.96 181.82 168.20 7.93 254.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 3.26 0.00 0.00 0.00 35 ER4c ExonRegion 0 0.35 0.00 3.88 12.04 243.49 548.00 208.30 105.72 6.18 146.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.53 3.55 0.00 0.00 0.49 36 I4 Intron 0 8.92 12.81 11.87 51.45 55.76 103.33 64.63 81.22 41.94 89.84 0.00 0.66 0.78 0.97 1.15 0.33 0.00 27.22 39.24 14.90 23.12 8.37 11.93 37 I4_SR1 SilentIntronRegion 0 4.63 4.79 3.78 28.35 35.40 91.54 61.46 74.31 18.74 77.72 0.00 0.00 0.27 0.04 0.61 0.18 0.00 13.86 28.71 8.70 7.81 1.02 4.44 38 I4_AR1 ActiveIntronRegion 0 9.82 24.88 21.04 66.95 92.61 67.08 37.20 39.48 38.13 58.10 0.00 0.00 0.00 2.18 1.54 0.00 0.00 27.80 50.47 16.72 28.27 25.07 18.72 39 I4_AR2 ActiveIntronRegion 0 12.24 22.01 6.16 53.05 61.83 82.09 71.26 21.62 33.11 44.86 0.00 0.00 0.00 1.34 2.59 0.00 0.00 6.32 25.70 21.11 55.89 18.75 18.48 40 I4_AR3 ActiveIntronRegion 0 25.46 40.68 43.92 143.27 133.35 174.33 89.41 140.28 137.71 164.83 0.00 3.48 3.13 4.35 2.90 1.03 0.00 86.14 86.20 38.63 75.42 32.05 39.06 41 E5_Aa NovelBoundary 0 36.23 24.27 66.14 291.34 115.45 237.19 121.23 199.37 236.86 245.22 0.00 0.00 6.82 0.00 15.82 0.00 0.00 107.07 177.61 32.60 117.75 81.75 81.69 42 E5_Ab NovelBoundary 0 16.89 29.07 65.49 213.03 105.26 242.08 111.42 204.59 195.92 186.13 0.00 0.00 0.00 7.53 0.00 0.00 0.00 106.87 213.56 36.88 104.28 60.01 61.80 43 ER5a ExonRegion 0 4.94 9.10 10.79 35.56 28.80 85.84 37.95 44.94 38.52 46.75 0.00 0.00 0.00 4.41 0.00 0.00 0.00 20.68 55.67 9.42 26.34 8.53 16.92 44 ER5b ExonRegion 0 15.45 39.81 32.74 122.51 211.40 336.01 170.24 278.81 101.02 256.63 0.00 3.73 3.54 2.66 2.14 0.00 0.00 73.72 70.63 30.23 26.83 12.21 21.15 45 ER5c ExonRegion 0 4.23 3.39 1.23 6.81 13.38 37.29 28.24 8.07 4.12 9.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 8.49 2.13 4.41 2.78 0.00 46 IG8 Intergenic 0 15.58 43.29 61.60 114.39 131.36 160.82 129.23 124.76 100.97 134.49 0.00 3.83 7.78 8.85 7.43 2.97 1.14 121.83 115.98 85.17 90.06 37.46 52.71 47 IG8_SR1 SilentIntergenicRegion 0 10.01 47.44 29.59 101.99 318.40 380.07 197.68 326.39 82.08 271.11 0.00 2.18 3.32 1.27 1.76 0.50 0.37 18.22 29.61 31.28 13.86 30.04 12.59 48 IG8_SR2 SilentIntergenicRegion 0 15.62 36.63 53.47 71.83 80.72 96.71 70.97 29.63 37.55 35.60 0.00 1.55 2.51 4.87 7.74 0.65 0.72 51.24 55.28 64.65 30.59 21.25 25.49 49 IG8_AR2 ActiveIntergenicRegion 0 24.58 69.68 95.60 185.60 156.90 202.38 173.58 122.37 138.84 143.93 0.00 8.63 13.92 11.58 10.42 4.13 1.04 154.19 165.81 112.12 108.02 56.61 65.67 50 IG8_SR3 SilentIntergenicRegion 0 16.46 33.89 63.29 112.49 80.53 107.26 110.22 77.87 111.35 113.89 0.00 3.45 7.42 13.70 10.71 4.79 2.97 169.67 145.09 102.58 136.23 44.46 71.03 51 IG8_AR3 ActiveIntergenicRegion 0 11.54 34.39 65.15 132.38 80.47 117.91 98.88 79.54 98.12 116.29 0.00 2.45 4.30 9.11 10.03 4.93 2.55 165.31 132.84 103.65 134.49 37.24 61.47 52 IG8_SR4 SilentIntergenicRegion 0 10.52 31.58 74.74 97.67 71.37 82.35 105.69 92.56 111.59 109.28 0.00 3.17 9.83 11.53 7.72 3.63 0.68 162.59 163.56 114.21 124.83 33.57 70.15 53 IG8_AR4 ActiveIntergenicRegion 0 6.35 47.40 70.79 93.41 65.25 108.34 140.54 140.27 159.33 145.22 0.00 0.00 5.77 12.74 14.06 6.40 0.00 197.42 234.74 138.62 127.31 53.69 114.30 54 IG8_AR5 ActiveIntergenicRegion 0 9.38 51.23 58.16 99.84 51.25 84.01 105.83 99.56 139.95 130.63 0.00 3.14 8.17 9.80 10.60 9.94 0.00 199.49 169.70 115.70 121.55 33.19 90.18 55 IG8_AR6 ActiveIntergenicRegion 0 13.35 31.60 46.00 82.51 75.13 79.42 79.44 89.08 125.22 132.69 0.00 0.00 3.61 19.36 7.81 4.80 0.00 176.82 98.01 110.64 119.85 25.64 71.61 56 IG8_AR7 ActiveIntergenicRegion 0 23.59 34.98 58.77 79.98 54.11 80.43 86.09 88.30 124.76 125.88 0.00 2.24 3.15 11.59 7.35 2.20 1.45 200.67 98.46 116.72 122.26 25.68 66.33 57 IG8_SR5 SilentIntergenicRegion 0 9.13 21.95 36.66 50.91 51.24 42.36 66.70 48.92 56.46 59.94 0.00 0.40 5.48 5.98 4.31 1.40 0.35 89.31 83.60 56.76 68.95 19.21 43.76