Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC133644.3 Gene 0 17.19 1.45 38.12 10.75 7.82 5.45 5.78 20.01 19.80 12.63 18.35 17.08 4.62 3.77 7.06 16.36 0.29 2.55 0.96 0.26 18.98 17.04 23.23 2 409054 Transcript 0 10.95 1.21 11.63 5.88 6.73 4.01 5.31 7.93 14.82 8.52 12.48 20.11 4.78 2.20 7.53 4.39 0.35 3.37 0.91 0.22 11.33 8.97 8.63 3 331944 Transcript 1 0.00 0.00 183.79 21.44 12.05 0.00 4.15 96.40 69.04 39.65 215.95 25.96 6.49 27.25 34.61 48.36 0.00 0.00 0.00 0.00 224.99 14.39 14.60 4 409139 Transcript 0 1.36 0.00 5.19 3.40 0.65 0.00 1.91 0.62 1.01 0.71 0.00 1.38 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.71 5 409898 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 414584 Transcript 0 2.01 0.00 1.96 1.36 0.31 0.00 0.46 1.07 2.82 0.39 0.95 0.00 1.34 0.31 0.24 0.00 0.00 0.00 0.00 0.00 1.22 1.39 1.28 7 455131 Transcript 0 1.89 0.00 1.48 0.00 0.00 0.00 1.06 0.00 0.87 1.37 10.27 0.00 2.84 0.00 2.23 3.42 0.00 0.00 0.00 0.00 1.58 0.00 1.71 8 423846 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 419680 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 10 414030 Transcript 0 11.95 0.50 8.55 1.08 3.01 0.00 0.40 3.02 2.75 0.98 0.98 1.07 2.04 0.80 0.61 3.58 0.00 0.48 0.00 0.00 1.04 0.53 1.61 11 437561 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 413202 Transcript 0 0.95 0.00 0.41 0.00 0.00 0.00 0.30 0.58 0.42 0.00 0.00 1.60 0.86 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 13 ER1a ExonRegion 0 9.52 0.00 2.06 2.26 3.06 2.07 1.09 1.25 3.67 0.00 6.05 1.68 0.00 1.31 14.32 2.01 0.00 0.00 1.54 0.00 0.00 4.70 0.00 14 E1_Ab KnownBoundary 0 30.82 0.00 4.44 3.76 11.21 5.17 0.00 2.46 11.02 1.34 22.48 12.00 0.00 0.00 21.14 3.85 0.00 0.00 4.80 0.00 0.00 8.21 0.00 15 ER1b ExonRegion 0 21.12 0.00 1.49 1.42 16.17 4.37 0.00 1.95 4.81 0.29 17.35 1.66 0.00 8.29 14.07 13.34 0.00 0.00 1.42 0.00 0.00 4.12 0.94 16 E1_Ac KnownBoundary 0 38.82 0.00 1.63 0.00 23.43 8.12 0.00 3.86 3.10 0.00 15.37 0.00 0.00 9.59 0.00 25.21 0.00 0.00 0.00 0.00 0.00 3.00 4.27 17 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1c ExonRegion 1 33.76 1.12 18.32 8.93 15.92 19.62 10.39 12.36 13.46 5.22 41.75 0.00 0.00 9.83 30.03 60.78 0.00 1.29 2.71 0.00 31.62 16.46 50.07 20 ER1d ExonRegion 1 115.70 8.13 70.53 45.43 33.00 66.83 49.43 68.37 54.35 23.19 129.29 6.73 0.00 28.33 76.72 208.05 0.00 9.24 12.74 0.00 156.22 147.93 214.05 21 ER1e ExonRegion 1 191.69 11.98 190.06 79.31 47.01 87.77 58.93 134.49 114.26 49.10 187.70 16.97 0.00 38.32 82.41 295.20 0.00 10.94 20.15 2.53 206.02 281.84 413.67 22 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1_Ag KnownBoundary 0 6.37 0.00 160.73 25.37 8.57 12.32 20.14 37.05 41.46 46.36 29.90 23.71 6.01 2.41 0.00 3.67 3.55 2.40 0.00 2.81 26.32 35.88 19.46 24 ER1f ExonRegion 1 75.32 3.30 229.19 85.39 17.90 29.78 21.14 145.96 129.56 60.19 73.92 11.20 0.00 7.78 14.71 91.93 0.00 7.45 7.69 3.37 60.87 127.38 173.97 25 ER1g ExonRegion 0 11.35 3.60 169.78 25.99 12.66 5.92 12.52 67.62 67.81 55.84 76.98 31.18 5.77 13.76 27.33 13.01 0.00 1.55 0.00 0.35 89.37 19.17 19.05 26 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 27 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E1a_E5a KnownJunction 0 0.00 0.00 4.32 2.93 0.00 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.63 4.35 29 E1a_E6a KnownJunction 0 3.78 0.00 2.96 0.00 0.00 0.00 2.12 0.00 1.74 2.74 20.53 0.00 5.68 0.00 4.45 6.84 0.00 0.00 0.00 0.00 3.15 0.00 3.41 30 E1a_E8a KnownJunction 1 0.00 0.00 183.79 21.44 12.05 0.00 4.15 96.40 69.04 39.65 215.95 25.96 6.49 27.25 34.61 48.36 0.00 0.00 0.00 0.00 224.99 14.39 14.60 31 E1a_E9a KnownJunction 0 0.00 3.09 7.92 2.06 0.00 0.00 4.46 2.14 17.10 3.44 23.69 12.45 0.00 2.47 0.00 8.12 0.00 0.00 0.00 0.00 25.45 3.12 0.00 32 I1_AR6 ActiveIntronRegion 0 0.91 0.00 5.60 0.00 0.00 0.00 1.32 5.19 1.24 0.74 3.73 0.00 0.00 0.00 0.00 0.00 3.30 1.85 0.00 0.00 9.13 0.00 0.00 33 E2_Aa NovelBoundary 0 3.78 0.00 3.40 2.06 0.00 0.00 2.25 0.00 5.27 0.00 0.00 0.00 0.00 0.00 0.00 8.12 0.00 0.00 0.00 0.00 3.03 0.00 12.12 34 ER2a ExonRegion 0 1.16 0.00 2.00 0.00 0.14 2.01 0.00 0.00 0.00 0.94 0.00 0.23 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 1.14 0.00 35 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3a ExonRegion 0 7.67 0.00 7.91 0.00 0.79 0.00 1.32 0.70 3.03 1.12 0.00 5.84 1.27 0.44 0.67 1.96 0.00 0.00 0.00 0.00 0.00 0.31 0.97 37 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E3a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER4a ExonRegion 0 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 I4_AR4 ActiveIntronRegion 0 16.14 0.19 6.19 3.85 5.79 0.35 2.79 5.90 3.25 0.81 0.35 0.00 2.81 0.34 1.32 2.06 0.00 0.00 0.00 0.00 1.31 0.00 3.09 43 ER5a ExonRegion 0 8.04 0.00 1.68 2.50 1.25 0.00 1.86 4.28 3.76 1.55 1.22 0.00 5.38 1.25 0.96 0.00 0.00 0.00 0.00 0.00 2.28 0.42 0.75 44 E5_Da NovelBoundary 0 60.68 0.00 15.43 1.50 18.17 0.00 11.31 7.56 13.69 5.00 0.00 0.00 8.28 0.00 4.45 3.67 0.00 0.00 0.00 0.00 5.87 0.00 19.12 45 E5a_E6a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 4.43 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 46 E6_Aa NovelBoundary 0 82.98 0.00 22.97 1.43 16.47 0.00 6.18 0.00 9.20 0.00 2.05 0.00 12.01 2.47 0.00 4.36 4.77 0.00 0.00 0.00 6.05 0.00 8.62 47 ER6a ExonRegion 0 22.89 1.55 27.23 6.50 6.07 0.47 2.54 11.05 10.51 5.61 8.22 9.05 10.45 1.60 2.05 3.70 0.00 0.35 0.81 0.00 2.97 2.24 11.15 48 E6_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER6b ExonRegion 0 15.36 0.66 22.60 3.93 1.79 0.51 1.10 11.99 8.96 3.50 1.25 5.93 4.46 1.09 0.57 8.79 0.00 0.73 0.00 0.00 1.75 0.43 3.26 51 E6_Db KnownBoundary 0 50.82 2.63 33.17 5.13 3.31 0.00 0.00 13.72 10.76 1.02 2.11 0.00 13.15 0.00 0.00 11.79 0.00 2.57 0.00 0.00 5.19 2.39 0.00 52 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER6c ExonRegion 0 23.90 1.00 17.10 2.16 6.01 0.00 0.79 6.04 5.51 1.96 1.96 2.14 4.08 1.61 1.23 7.17 0.00 0.96 0.00 0.00 2.07 1.05 3.21 54 I6_SR8 SilentIntronRegion 0 13.22 0.79 5.52 0.79 1.92 0.30 1.46 1.04 2.68 1.68 0.64 3.41 1.71 0.15 0.65 1.97 0.00 0.00 0.00 0.00 1.38 0.81 2.43 55 I6_AR12 ActiveIntronRegion 0 2.12 0.00 2.60 1.36 0.00 0.00 0.00 0.00 0.00 1.15 0.00 14.07 1.56 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.37 56 I6_AR13 ActiveIntronRegion 0 4.64 0.00 4.26 0.99 2.12 0.00 2.51 5.67 7.18 5.02 1.79 16.77 4.85 0.65 0.54 0.50 0.44 0.00 0.00 0.00 0.83 2.18 1.16 57 ER7a ExonRegion 0 1.89 0.00 0.82 0.00 0.00 0.00 0.59 1.15 0.83 0.00 0.00 3.19 1.73 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 58 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 I7_AR4 ActiveIntronRegion 0 8.07 0.00 10.83 0.00 1.95 0.00 1.32 6.26 11.85 0.00 1.31 4.21 1.39 0.61 2.04 0.00 0.00 0.00 2.32 0.00 3.93 8.17 0.00 60 ER8a ExonRegion 0 20.31 1.50 211.05 50.46 22.52 19.50 10.97 102.07 68.62 48.20 76.22 38.90 4.37 16.37 44.36 91.78 0.81 4.28 4.71 1.05 71.27 92.69 117.17 61 E8_Da KnownBoundary 1 20.30 0.00 109.49 17.41 7.13 0.00 0.00 12.73 27.05 20.90 17.85 43.96 6.82 2.35 5.07 7.86 3.65 2.32 0.00 0.00 27.00 22.72 7.26 62 ER8b ExonRegion 0 97.13 5.11 68.92 10.90 24.11 8.28 9.33 37.41 10.02 13.68 11.44 23.19 2.97 4.87 11.69 4.94 1.67 0.46 0.00 0.00 18.00 3.16 4.04 63 ER8c ExonRegion 0 4.76 0.51 0.00 0.34 0.00 1.38 0.66 2.59 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER9a ExonRegion 0 7.59 1.53 14.50 7.27 5.35 1.63 4.72 6.33 28.96 18.31 18.74 22.96 4.43 1.79 0.00 6.61 0.00 3.74 1.43 0.00 17.36 10.23 11.42 65 E9_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER9b ExonRegion 1 12.38 2.42 21.21 9.49 10.39 5.95 9.52 14.60 25.97 17.04 18.90 38.55 9.55 3.09 0.74 6.77 0.69 6.75 0.27 0.44 22.65 13.23 17.27 69 E9_Db NovelBoundary 0 10.37 0.00 11.56 9.69 0.00 2.78 12.06 7.48 34.64 6.53 10.37 6.90 20.94 4.77 0.00 4.02 0.00 10.86 0.00 5.69 14.64 11.63 16.30 70 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 ER11a ExonRegion 0 0.24 0.00 5.66 4.00 0.35 0.00 0.13 1.23 2.87 1.86 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.72 0.38 73 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER11b ExonRegion 0 2.73 0.00 10.38 6.79 1.30 0.00 3.81 1.23 2.02 1.42 0.00 2.76 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 1.70 0.00 1.42