Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LYG2 Gene 0 9.31 16.26 17.84 21.13 15.05 6.67 18.70 7.84 6.85 6.07 3.60 6.15 11.15 6.83 6.65 9.80 4.05 19.69 10.51 32.21 4.56 2.73 4.47 2 423306 Transcript 0 0.00 2.15 0.41 1.06 0.89 0.31 1.47 0.67 0.96 0.13 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.92 0.00 0.83 0.00 0.00 0.00 3 409679 Transcript 0 3.43 3.97 3.82 8.63 3.25 2.11 3.66 2.68 2.48 3.30 2.90 3.99 1.85 2.73 2.22 3.59 2.80 8.79 5.73 12.08 3.69 1.30 2.59 4 432636 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 333017 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 423800 Transcript 0 0.79 2.45 0.00 0.00 2.58 0.00 2.11 0.00 0.00 0.00 0.00 1.33 1.76 5.87 5.21 2.90 0.00 0.00 3.19 6.82 0.00 0.00 1.03 7 409238 Transcript 0 0.00 1.02 0.46 4.09 0.00 0.00 4.63 1.51 0.00 2.01 0.00 0.00 2.35 1.83 5.44 0.00 0.83 0.00 0.00 1.86 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 0.00 1.36 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 2.89 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 10 E2_Ac KnownBoundary 0 0.00 16.05 9.17 14.52 0.00 8.57 10.91 5.71 6.19 3.17 0.00 7.65 13.64 4.94 0.00 7.69 0.00 17.49 18.45 35.67 13.84 2.45 0.00 11 ER2b ExonRegion 0 0.07 4.75 4.70 3.63 0.00 2.93 5.21 1.33 2.96 0.23 0.00 4.33 4.69 2.76 3.58 0.99 0.00 5.97 7.75 10.85 6.39 0.69 0.10 12 ER2c ExonRegion 0 3.70 11.43 6.97 14.26 7.84 2.21 3.58 7.03 6.72 5.92 3.40 5.57 7.55 1.40 5.97 8.37 1.94 11.13 2.93 22.52 5.55 2.20 5.13 13 E2_Da NovelBoundary 0 14.30 0.00 3.55 17.91 3.90 0.00 6.18 13.76 10.13 7.09 2.42 0.00 15.10 2.47 0.00 3.50 0.00 36.31 0.00 54.01 2.97 5.57 7.77 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix Intron 0 4.20 6.80 6.59 14.30 7.00 2.98 7.89 7.44 6.81 6.17 1.40 7.29 6.92 1.72 2.11 5.10 4.77 8.47 8.34 22.28 2.78 1.50 2.12 17 Ix_SR1 SilentIntronRegion 0 4.22 6.82 6.62 14.35 7.03 2.99 7.91 7.47 6.83 6.19 1.40 7.31 6.95 1.72 2.12 5.12 4.78 8.50 8.37 22.35 2.79 1.51 2.13 18 ER3a ExonRegion 0 0.00 6.44 1.23 3.18 2.68 0.92 4.19 2.02 2.88 0.38 0.00 0.00 3.13 0.00 0.00 0.00 0.00 2.77 0.00 2.48 0.00 0.00 0.00 19 ER3b ExonRegion 0 0.00 10.17 1.23 4.09 4.68 4.58 4.63 2.59 4.32 1.72 0.97 0.00 9.38 0.00 0.00 2.23 0.00 5.54 0.00 3.19 0.00 0.00 0.00 20 ER3c ExonRegion 0 1.95 10.30 1.77 4.02 3.78 8.53 6.83 1.92 3.51 1.15 1.84 0.00 5.21 0.03 1.75 5.28 0.63 2.46 0.81 8.61 0.10 0.00 0.00 21 E3_Da NovelBoundary 0 22.37 19.27 9.02 30.00 18.76 2.90 31.40 17.29 15.34 14.72 0.00 31.51 6.82 0.00 0.00 16.58 13.65 12.81 13.08 23.84 13.53 0.00 4.35 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.34 0.00 0.00 0.00 0.00 23 Ix Intron 0 9.13 16.13 17.20 27.88 15.45 5.41 16.08 10.15 11.40 8.34 2.54 9.25 14.15 3.68 5.64 8.47 2.94 14.98 12.00 29.90 3.66 2.79 4.44 24 Ix_SR1 SilentIntronRegion 0 8.34 15.39 14.13 24.94 13.75 4.77 13.57 9.63 10.77 8.20 1.99 8.96 12.72 2.80 4.08 7.30 1.89 11.68 11.19 27.70 3.08 2.73 3.86 25 Ix_AR1 ActiveIntronRegion 0 14.39 21.13 37.60 47.56 26.79 9.71 32.76 13.62 15.64 9.36 6.21 11.21 23.73 9.52 15.96 16.28 9.98 36.96 17.44 44.60 7.49 3.15 8.32 26 E4_Aa NovelBoundary 0 2.82 8.95 47.57 37.92 15.70 2.50 10.33 17.00 7.12 13.48 2.26 30.61 39.12 7.95 24.11 7.18 13.09 47.34 12.99 68.39 11.49 6.25 8.54 27 ER4a ExonRegion 0 7.63 18.29 34.15 38.63 20.44 7.96 14.37 13.96 10.70 6.23 6.14 15.38 32.30 14.41 12.12 13.70 10.37 40.94 18.10 47.35 8.72 4.55 6.37 28 E4_Da NovelBoundary 0 2.74 50.58 35.72 51.24 55.77 20.10 15.55 32.41 27.89 11.28 4.69 50.27 12.99 12.48 0.00 15.04 11.69 56.79 8.75 44.55 2.72 2.27 10.24 29 E4a_E5a KnownJunction 0 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 19.32 26.41 36.39 37.08 27.00 11.58 27.77 16.05 14.22 15.90 5.77 10.93 22.90 8.51 8.13 11.22 4.64 26.44 16.78 40.14 6.57 5.12 6.19 31 Ix_AR2 ActiveIntronRegion 0 24.17 29.10 47.52 51.06 32.09 14.04 36.26 23.05 18.69 18.93 8.46 16.52 33.99 10.36 8.59 13.52 6.05 32.57 15.24 49.84 7.19 7.69 5.72 32 Ix_SR1 SilentIntronRegion 0 15.87 26.36 27.50 24.90 24.18 10.05 21.00 9.65 10.61 14.21 3.26 5.60 12.47 7.33 8.57 9.84 3.51 22.33 20.59 33.42 6.61 2.69 7.48 33 E5_Aa NovelBoundary 0 6.37 35.91 68.45 48.75 109.51 20.33 64.83 20.95 15.05 16.33 10.27 0.00 12.17 7.36 25.47 21.19 4.11 29.18 33.88 54.52 16.62 6.06 3.16 34 ER5a ExonRegion 0 22.44 33.76 47.10 34.46 37.39 11.39 39.05 11.29 10.53 11.50 4.03 6.86 11.74 8.74 9.15 12.31 2.63 26.43 15.73 45.94 5.13 3.75 4.59 35 E5_Da NovelBoundary 0 17.41 18.09 111.73 73.02 24.36 12.38 23.72 26.57 17.94 23.18 14.48 0.00 6.82 4.71 15.20 28.88 17.39 36.64 40.94 52.35 11.92 8.70 4.35 36 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 Ix Intron 0 8.61 14.00 21.71 27.70 24.61 7.57 21.87 10.15 8.06 8.34 3.39 10.41 16.72 5.64 7.76 6.32 4.96 11.06 9.57 32.89 0.83 4.30 4.96 38 Ix_AR2 ActiveIntronRegion 0 6.53 11.00 22.53 23.54 12.41 12.75 13.81 9.95 7.82 7.92 2.99 1.67 9.27 6.15 9.03 5.74 2.55 25.91 12.31 26.31 3.41 3.22 2.27 39 Ix_SR1 SilentIntronRegion 0 9.12 14.89 22.14 29.42 27.86 6.67 24.25 10.51 8.39 8.69 3.48 12.52 18.05 5.65 7.78 6.67 5.47 8.41 9.36 34.91 0.34 4.62 5.53 40 E6_Aa NovelBoundary 0 30.89 18.88 19.34 30.13 39.05 2.67 18.24 6.57 3.59 5.48 0.00 6.30 27.27 11.95 0.00 15.47 9.26 21.93 0.00 46.98 2.90 11.27 4.35 41 Ix_AR1 ActiveIntronRegion 0 6.45 6.66 5.74 3.78 2.92 4.17 1.02 1.73 0.51 1.30 3.16 0.39 22.60 2.81 0.26 0.00 4.65 2.27 0.29 14.80 0.00 1.70 4.54 42 ER6a ExonRegion 0 8.15 22.70 11.54 18.39 13.40 11.35 31.50 2.11 6.68 3.53 3.22 6.97 7.69 5.35 3.54 6.66 4.59 13.01 9.03 37.82 2.72 0.29 7.20 43 E6_Da KnownBoundary 0 10.67 3.03 15.88 19.91 0.00 5.79 8.30 2.05 3.21 1.58 0.00 0.00 0.00 4.83 9.64 3.93 4.77 13.76 0.00 28.51 6.30 0.00 11.87 44 E6_Db KnownBoundary 0 0.00 16.90 4.94 14.02 23.85 5.79 13.12 2.55 5.76 5.61 2.68 0.00 0.00 0.00 0.00 0.00 4.30 13.97 12.89 30.42 5.19 6.25 0.00 45 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E6b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER6b ExonRegion 0 7.31 14.79 16.15 27.75 17.51 7.34 14.08 3.46 5.05 6.67 2.99 1.97 0.00 7.83 5.80 4.59 6.60 28.05 11.29 51.45 9.22 4.17 6.67 48 ER6c ExonRegion 0 6.87 6.59 7.65 17.26 6.49 4.22 5.11 5.36 4.96 6.59 5.81 5.10 3.70 5.45 4.44 7.17 5.59 16.96 11.46 24.15 7.39 2.60 5.18 49 E6_Dc NovelBoundary 0 14.00 26.84 7.39 17.75 24.02 5.34 24.51 8.34 4.20 5.05 6.84 6.15 6.82 7.36 9.39 3.85 4.58 10.16 25.98 5.18 6.18 3.12 0.00 50 E7_Aa NovelBoundary 0 2.82 23.94 15.79 16.05 19.95 5.79 1.99 8.09 3.33 6.34 4.47 0.00 6.82 14.19 4.45 11.45 3.83 9.12 3.86 21.22 0.00 0.00 3.84 51 ER7a ExonRegion 0 2.12 5.26 0.29 0.00 2.68 0.00 4.67 0.00 0.00 0.00 0.00 3.82 2.48 6.50 1.02 2.45 0.00 0.11 1.69 12.64 0.00 0.00 2.94 52 ER7b ExonRegion 0 1.59 4.90 0.00 0.00 5.17 0.00 4.21 0.00 0.00 0.00 0.00 2.66 3.52 11.74 10.42 5.81 0.00 0.00 6.37 13.64 0.00 0.00 2.07 53 E7_Db NovelBoundary 0 7.48 16.58 30.96 26.50 6.96 5.22 6.67 9.57 7.44 2.39 7.11 0.00 13.64 2.47 0.00 13.07 0.00 21.89 4.52 22.24 2.72 5.20 4.27 54 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 Ix Intron 0 7.06 12.14 21.16 27.28 12.21 6.28 20.34 7.46 10.82 10.50 5.09 4.69 11.29 6.80 7.64 7.30 7.53 20.24 10.35 34.74 5.80 3.29 5.16 56 Ix_SR1 SilentIntronRegion 0 7.08 12.18 21.23 27.37 12.26 6.30 20.41 7.49 10.86 10.54 5.11 4.71 11.32 6.82 7.67 7.33 7.56 20.31 10.38 34.85 5.82 3.30 5.17 57 E8_Aa NovelBoundary 0 3.26 35.52 13.48 50.28 52.72 18.40 63.95 12.98 10.76 14.88 0.00 0.00 34.09 14.48 0.00 4.36 18.05 17.91 8.19 41.67 3.15 0.00 0.00 58 ER8a ExonRegion 0 10.93 18.04 16.66 25.61 16.40 6.22 25.78 14.45 8.64 7.13 3.09 6.52 18.99 7.02 7.66 15.48 4.11 30.84 12.80 38.47 3.09 5.83 4.62 59 E8_Da KnownBoundary 0 25.19 27.56 19.13 23.67 15.11 14.37 47.30 17.66 13.69 9.48 2.32 0.00 6.82 11.83 0.00 22.39 0.00 21.68 18.82 47.62 3.15 0.00 0.00 60 ER8b ExonRegion 0 12.28 11.76 8.07 16.02 10.66 5.90 31.96 9.84 5.61 7.09 1.13 0.33 4.62 8.45 8.30 16.92 2.49 12.05 5.44 39.61 0.81 1.63 2.17 61 ER8c ExonRegion 0 0.00 1.02 0.46 4.09 0.00 0.00 4.63 1.51 0.00 2.01 0.00 0.00 2.35 1.83 5.44 0.00 0.83 0.00 0.00 1.86 0.00 0.00 0.00