Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CNNM4 Gene 0 24.27 55.87 63.64 66.04 33.12 121.04 45.23 52.03 80.63 54.30 73.41 34.33 79.99 125.62 75.80 84.92 33.31 90.57 42.42 56.75 37.00 37.84 39.58 2 377075 Transcript 0 15.75 41.96 48.18 60.15 19.18 106.93 44.16 47.47 75.04 50.74 88.76 28.66 89.91 134.11 66.50 93.12 37.77 100.59 34.63 61.15 40.22 29.36 41.28 3 482716 Transcript 0 0.57 0.72 2.12 0.09 0.00 0.03 0.11 1.08 3.01 0.16 0.46 0.00 0.00 0.01 1.20 3.24 0.00 0.90 0.00 1.45 0.00 0.57 0.03 4 496186 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 493384 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 5.35 19.58 26.72 22.14 10.72 63.75 27.85 26.50 58.46 40.83 68.68 28.40 63.76 114.53 51.46 76.97 31.82 84.42 43.16 58.80 32.22 30.17 34.07 7 E1a_E3a KnownJunction 0 3.78 56.44 31.84 38.62 16.38 98.52 47.96 36.88 78.47 64.23 97.13 37.06 82.62 138.15 62.43 118.09 31.70 109.73 37.55 70.18 40.03 26.64 82.63 8 I1_AR1 ActiveIntronRegion 0 4.03 4.09 15.61 4.10 2.79 8.25 5.03 10.13 7.00 6.31 1.96 1.64 2.25 2.24 11.18 13.62 2.86 6.30 7.97 7.96 0.49 0.93 6.55 9 I1_SR2 SilentIntronRegion 0 3.45 3.71 16.72 5.26 3.94 5.97 5.12 8.67 6.63 5.52 1.47 3.59 4.53 1.23 9.16 9.96 1.57 6.75 7.25 9.94 0.47 0.27 6.61 10 I1_AR2 ActiveIntronRegion 0 1.96 1.85 14.29 1.95 2.88 1.17 2.12 3.61 4.60 2.96 0.96 1.75 1.28 2.05 4.99 8.22 1.48 6.31 2.38 3.72 1.06 0.93 3.45 11 ER2a ExonRegion 0 0.78 2.03 2.00 0.32 0.54 2.93 2.07 0.00 1.98 0.80 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.29 0.00 0.85 0.00 0.00 0.00 12 ER2b ExonRegion 0 1.84 0.93 3.68 3.14 2.85 2.23 3.05 0.45 3.71 3.39 0.00 0.94 0.00 0.81 0.00 6.20 0.00 1.21 0.00 5.13 0.00 0.00 0.00 13 E2_Da KnownBoundary 0 0.00 0.00 3.02 7.69 0.00 0.00 0.00 1.77 2.95 3.30 0.00 0.00 0.00 2.47 0.00 4.36 0.00 0.00 0.00 6.14 0.00 0.00 0.00 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2c ExonRegion 0 0.00 2.83 5.69 2.57 1.01 0.00 1.34 1.25 4.34 1.03 0.09 0.00 0.00 1.18 2.32 6.25 1.25 0.16 0.00 4.89 0.83 0.00 4.44 16 E2_Db KnownBoundary 0 0.00 3.09 8.01 2.86 4.24 0.00 2.08 2.55 4.46 1.53 0.00 0.00 0.00 0.00 0.00 12.39 0.00 1.78 0.00 3.26 0.00 0.00 0.00 17 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2d ExonRegion 0 1.15 1.45 4.24 0.17 0.00 0.06 0.23 2.17 4.35 0.32 0.93 0.00 0.00 0.02 2.41 6.48 0.00 1.81 0.00 2.90 0.00 1.13 0.06 19 E2c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 7.08 29.32 43.60 28.51 20.68 110.72 36.86 42.50 86.23 58.25 88.46 58.93 106.05 156.65 69.99 99.07 35.97 103.27 45.35 63.79 52.23 43.29 47.80 21 E3a_E4a KnownJunction 0 6.30 20.19 42.13 34.46 12.14 91.82 57.01 45.26 94.10 58.40 88.23 35.86 114.77 137.91 71.08 102.11 66.29 116.48 32.75 64.24 64.99 41.27 39.95 22 ER4a ExonRegion 0 11.96 29.18 56.57 50.19 27.25 125.11 46.97 67.09 129.89 81.52 124.44 52.35 180.61 205.07 91.54 144.88 62.11 144.69 55.06 86.69 74.66 64.89 69.04 23 E4_Da KnownBoundary 0 6.89 24.86 77.79 53.74 28.86 120.44 24.47 76.03 114.50 93.96 141.25 74.87 94.64 151.33 120.90 76.30 66.95 106.45 14.02 69.41 76.17 19.78 56.25 24 ER4b ExonRegion 0 5.15 34.30 69.65 44.46 16.92 107.20 34.21 62.08 96.54 77.90 143.77 88.93 175.05 153.02 74.65 89.81 81.45 100.73 43.05 49.80 89.58 35.76 45.32 25 E4b_E5a KnownJunction 0 9.93 48.41 71.32 48.45 20.37 128.96 51.67 66.38 93.46 70.16 142.62 82.08 246.09 192.71 69.84 125.86 90.70 108.82 73.41 58.16 94.95 54.31 45.93 26 ER5a ExonRegion 1 7.57 26.04 32.22 27.28 16.47 112.66 36.63 44.82 74.37 52.69 85.59 47.86 176.50 167.39 88.99 115.40 49.95 112.81 47.86 63.71 60.69 48.82 48.91 27 E5_Da KnownBoundary 0 13.85 28.22 44.29 34.16 23.34 72.00 32.06 38.32 52.81 49.51 73.70 42.76 157.94 135.68 98.65 74.60 43.95 87.18 28.14 61.62 50.47 34.17 29.96 28 ER5b ExonRegion 0 9.17 24.06 26.35 20.64 13.06 73.79 37.83 37.24 53.05 36.51 63.56 60.92 125.96 148.14 47.66 57.89 27.74 67.97 19.49 46.45 44.23 27.93 35.17 29 E5b_E6a KnownJunction 1 6.37 36.84 32.44 27.10 10.61 63.26 50.04 51.88 68.87 40.45 47.49 61.07 151.94 129.91 46.60 52.04 32.35 81.70 16.75 32.41 50.47 26.70 30.65 30 ER6a ExonRegion 1 7.31 25.24 24.85 25.78 14.92 80.65 30.98 30.70 57.60 31.82 59.72 67.75 180.11 135.59 52.43 84.45 41.21 118.03 24.07 43.67 50.64 31.00 44.90 31 E6_Da NovelBoundary 0 7.26 3.35 7.21 6.59 0.00 19.82 1.99 9.16 11.11 12.11 4.90 5.70 0.00 10.01 15.20 12.22 0.00 38.84 0.00 31.58 5.87 2.69 3.67 32 E6a_E7a KnownJunction 1 3.78 28.74 26.94 32.06 21.22 75.81 38.55 27.23 56.91 42.39 54.59 35.86 184.57 161.11 87.27 103.99 59.65 116.98 64.85 34.77 24.15 29.15 69.49 33 I6 Intron 0 6.07 13.29 11.75 19.40 9.33 30.89 14.88 17.69 26.95 9.03 7.58 7.31 18.70 10.93 10.22 14.21 4.35 25.58 12.09 22.28 7.00 4.06 6.36 34 I6_SR1 SilentIntronRegion 0 3.18 4.94 7.39 7.69 2.46 17.56 5.77 15.70 21.19 7.82 5.98 1.99 5.20 8.56 8.12 13.17 3.48 29.80 12.14 21.10 10.27 2.39 5.61 35 I6_AR1 ActiveIntronRegion 0 2.34 4.28 12.83 12.50 1.50 23.24 8.63 20.20 36.20 6.73 8.85 2.42 7.13 15.30 15.23 13.79 4.55 43.05 16.63 30.35 10.45 3.72 6.91 36 I6_SR2 SilentIntronRegion 0 6.60 13.68 11.23 18.87 10.14 28.31 16.98 16.97 25.78 7.98 6.38 9.37 25.33 10.54 10.12 14.14 4.19 23.11 12.52 21.95 6.61 3.81 5.43 37 I6_AR2 ActiveIntronRegion 0 8.22 23.82 12.52 33.48 17.48 52.59 26.85 26.22 33.81 9.18 13.54 11.75 43.25 11.85 10.79 14.99 7.09 16.05 11.00 22.35 4.86 8.63 11.01 38 I6_SR3 SilentIntronRegion 0 5.86 17.37 9.22 18.14 10.84 40.96 16.02 10.92 18.99 7.04 6.93 6.89 6.97 8.76 8.09 10.33 2.54 14.13 6.49 14.32 1.68 3.87 4.90 39 I6_AR3 ActiveIntronRegion 0 14.30 29.71 31.86 54.49 23.34 58.95 19.97 25.00 45.48 27.07 12.68 11.27 14.94 17.97 13.84 23.94 7.26 37.49 13.00 30.22 5.51 5.87 10.81 40 E7_Aa NovelBoundary 0 22.08 8.68 12.74 38.26 7.89 62.24 21.82 20.82 25.93 16.06 9.84 7.50 13.64 12.42 14.59 25.98 4.39 27.44 13.55 29.91 0.00 2.51 8.28 41 ER7a ExonRegion 0 19.79 35.78 50.78 55.92 32.30 108.38 34.31 35.60 66.05 48.49 63.42 33.57 120.04 143.90 67.97 104.71 28.58 118.65 45.63 58.80 43.44 29.45 40.76 42 E7_Da KnownBoundary 1 21.26 59.53 51.89 79.91 24.53 147.70 37.89 61.98 94.96 64.41 88.07 5.85 65.09 115.84 97.90 122.02 49.28 120.92 24.75 84.24 39.41 30.19 36.28 43 ER7b ExonRegion 0 17.73 23.75 36.28 67.46 12.14 99.52 39.13 54.72 72.59 45.30 94.82 29.22 124.45 138.60 64.66 91.07 45.51 109.58 22.30 59.73 42.03 20.91 27.27 44 E7_Db NovelBoundary 0 3.78 12.30 8.75 15.92 15.79 13.12 0.00 7.06 4.86 6.88 7.84 16.66 0.00 2.47 5.44 0.00 3.65 16.71 31.15 20.65 0.00 0.00 0.00 45 E7b_E8a KnownJunction 1 10.00 18.94 47.69 65.56 3.14 99.72 42.97 44.32 62.96 34.81 102.03 11.85 98.69 141.50 54.14 85.87 44.79 100.90 22.68 56.50 48.00 22.96 17.24 46 I7_AR1 ActiveIntronRegion 0 5.51 6.31 13.94 3.14 4.07 7.48 8.27 3.97 4.65 4.28 1.01 1.86 2.01 4.31 5.15 4.40 3.44 5.26 4.97 7.27 0.00 1.08 1.47 47 E8_Aa NovelBoundary 0 6.74 3.03 15.67 18.88 0.00 28.34 8.39 17.37 15.08 7.68 2.47 6.30 0.00 12.01 4.45 0.00 0.00 16.79 0.00 11.19 3.15 3.06 14.85 48 ER8a ExonRegion 0 41.89 91.07 98.35 106.95 53.50 173.15 62.89 74.90 102.74 68.56 81.14 36.77 80.02 137.75 99.82 93.61 35.05 98.30 47.43 60.54 38.85 46.11 45.20