Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DUSP2 Gene 0 4.30 0.70 12.15 1.23 2.83 5.76 2.06 7.07 16.96 0.90 46.48 8.01 8.76 92.53 99.30 87.32 161.29 1.02 0.42 0.34 4.48 3.74 3.57 2 288943 Transcript 0 10.34 2.69 32.16 1.75 4.63 16.15 4.66 12.31 30.15 1.44 95.04 18.44 25.03 227.03 229.57 176.52 336.11 2.22 1.37 0.09 11.61 7.74 8.25 3 488952 Transcript 0 3.14 0.02 0.23 0.00 1.70 0.14 0.02 0.07 1.08 0.01 1.28 0.09 0.23 3.14 5.26 3.58 8.77 0.01 0.01 0.00 0.06 0.05 0.04 4 ER1a ExonRegion 0 1.48 0.46 12.89 1.23 2.30 6.65 3.00 7.87 17.66 0.97 92.72 13.66 10.01 145.37 159.48 164.59 288.60 1.77 1.37 0.46 6.71 4.77 6.69 5 E1_Da NovelBoundary 1 7.11 0.00 3.40 1.43 4.33 0.00 0.00 6.16 15.83 0.00 30.01 0.00 0.00 32.43 90.86 56.40 112.39 0.00 0.00 0.00 5.75 0.00 0.00 6 E1a_E2a KnownJunction 0 3.78 0.00 39.83 2.06 0.00 15.22 3.58 16.35 37.38 2.93 114.08 17.11 6.82 239.45 244.02 166.20 343.34 5.14 0.00 0.00 14.27 2.69 14.51 7 I1 Intron 1 1.29 0.00 0.00 0.00 4.87 0.00 1.61 0.00 2.23 0.00 7.04 0.00 0.00 19.90 35.85 14.44 58.12 0.00 0.00 0.00 0.00 0.00 0.00 8 I1_AR1 ActiveIntronRegion 1 1.32 0.00 0.00 0.00 4.99 0.00 1.65 0.00 2.29 0.00 7.21 0.00 0.00 20.36 36.65 14.75 59.46 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 0 3.19 0.00 2.96 0.00 3.65 0.00 0.00 6.78 20.72 0.00 34.90 12.60 0.00 45.26 44.01 62.72 145.96 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 17.00 4.07 39.36 3.71 9.69 19.35 4.82 15.22 38.90 1.78 149.02 35.98 48.25 354.31 401.56 264.84 565.72 1.98 0.86 0.00 17.59 10.90 10.54 11 E2_Da NovelBoundary 0 9.78 0.00 16.20 1.43 12.82 0.00 0.00 6.86 26.76 0.00 47.22 18.61 0.00 57.27 72.44 113.47 159.14 0.00 0.00 0.00 0.00 0.00 0.00 12 E2a_E3b KnownJunction 0 26.97 8.55 68.39 1.40 8.23 38.44 10.33 20.50 54.17 1.50 116.40 24.16 59.74 386.49 334.76 280.52 468.26 2.20 4.61 0.00 19.09 19.96 8.45 13 I2 Intron 0 5.78 0.00 0.83 0.92 2.44 0.84 0.00 4.69 6.70 0.00 22.88 4.87 1.76 31.67 39.40 48.72 87.18 0.00 0.00 0.00 0.00 0.00 0.00 14 I2_AR1 ActiveIntronRegion 0 6.26 0.00 0.93 1.04 2.73 0.92 0.00 5.08 7.10 0.00 24.76 5.33 1.97 34.97 42.71 52.78 93.71 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 25.41 0.00 17.15 1.96 3.31 0.00 1.68 8.54 29.31 0.00 24.95 6.30 0.00 28.84 70.46 99.80 124.26 0.00 3.86 0.00 0.00 0.00 0.00 16 I2_SR1 SilentIntronRegion 0 2.12 0.00 0.00 0.00 0.00 0.18 0.00 1.73 4.08 0.00 8.70 1.30 0.00 5.03 14.22 17.54 38.95 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 3.14 0.02 0.23 0.00 1.70 0.14 0.02 0.07 1.08 0.01 1.28 0.09 0.23 3.14 5.26 3.58 8.77 0.01 0.01 0.00 0.06 0.05 0.04 18 E3_Ab KnownBoundary 0 3.48 0.00 0.00 1.96 4.24 2.90 2.21 0.00 6.25 0.00 20.74 0.00 0.00 2.06 4.82 41.95 54.32 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3b ExonRegion 0 5.17 0.92 41.48 4.59 2.97 13.70 2.13 16.46 48.46 2.83 80.67 13.80 22.57 205.40 213.31 151.96 295.39 2.05 0.25 0.70 10.36 10.26 4.89 20 E3_Da NovelBoundary 0 32.67 0.00 10.38 5.26 0.00 2.44 0.00 13.92 14.47 0.00 36.90 17.56 6.82 73.93 66.38 88.18 148.85 0.00 0.00 0.00 0.00 0.00 7.00 21 E3a_E4a KnownJunction 0 36.15 0.00 50.47 5.63 9.68 38.22 9.54 41.16 112.06 6.31 229.64 37.51 27.27 444.23 509.18 444.58 681.35 4.73 0.00 5.88 19.52 29.70 19.12 22 E4_Aa NovelBoundary 0 30.30 0.00 18.80 0.00 0.00 2.61 3.71 12.45 11.72 1.56 19.16 6.30 6.82 81.05 56.00 104.33 233.57 0.00 0.00 0.00 3.15 0.00 3.84 23 ER4a ExonRegion 0 7.25 0.72 10.45 0.44 1.55 6.34 2.02 11.43 23.51 1.44 25.95 2.69 3.55 50.23 47.65 66.63 99.39 1.41 0.00 0.91 2.63 3.77 2.43 24 E4_Da KnownBoundary 0 12.74 0.00 14.07 0.00 4.07 14.42 0.00 3.90 6.11 1.05 11.95 16.36 0.00 5.47 16.69 31.19 26.74 2.45 0.00 0.00 0.00 0.00 0.00 25 ER4b ExonRegion 0 2.48 0.37 0.33 0.37 2.91 1.10 1.56 1.63 2.67 0.00 2.97 1.29 0.35 9.54 8.04 6.46 14.66 0.00 0.00 0.00 0.40 0.38 1.06 26 IG29_SR2 SilentIntergenicRegion 0 0.89 0.21 3.65 0.21 1.27 1.45 0.00 1.49 5.03 0.45 3.66 0.98 0.86 4.77 13.32 7.03 17.70 0.00 0.33 0.00 0.23 0.00 0.31 27 IG29_AR1 ActiveIntergenicRegion 0 1.20 0.00 5.59 0.46 0.30 1.25 0.15 1.17 2.71 0.38 3.29 0.81 0.44 5.57 10.64 5.39 11.22 0.00 0.36 0.00 0.00 0.00 0.00