Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC027612.7 Gene 0 4.05 6.60 46.79 39.54 14.02 11.44 18.28 37.50 49.77 56.88 0.32 5.34 2.32 8.94 18.43 2.47 0.82 62.34 36.04 28.15 27.49 31.72 20.03 2 271699 Transcript 0 0.72 2.08 21.63 10.88 8.29 4.36 6.14 18.94 13.17 27.47 1.59 4.61 3.49 2.22 8.04 4.01 2.14 21.94 18.06 17.01 16.93 11.23 11.15 3 423774 Transcript 0 0.53 0.85 7.21 3.86 2.90 2.14 4.30 4.68 8.54 8.65 0.16 1.80 0.39 0.41 1.81 0.74 0.28 8.47 4.06 2.48 4.77 2.08 2.69 4 ER1a ExonRegion 0 0.00 0.00 6.63 3.76 6.79 4.34 7.46 6.15 12.62 7.94 0.00 0.00 0.00 0.63 1.77 0.00 0.00 14.56 7.46 5.81 4.62 2.39 4.15 5 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER2a ExonRegion 0 0.00 0.00 14.70 10.90 8.03 7.34 9.27 11.23 29.64 17.78 0.00 0.00 0.00 1.62 4.35 0.00 0.00 27.72 7.96 4.26 6.61 4.17 5.87 7 ER2b ExonRegion 0 7.35 3.82 41.41 27.21 19.12 15.26 16.92 29.85 42.60 56.90 1.17 2.71 1.07 2.60 19.40 2.06 0.33 49.47 21.64 23.88 33.41 12.76 14.59 8 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Db NovelBoundary 0 0.00 0.00 1.42 8.92 0.00 0.00 4.24 8.71 0.00 11.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.53 0.00 6.14 0.00 0.00 0.00 10 E2b_E3b KnownJunction 0 0.00 0.00 36.57 1.70 19.69 5.11 1.99 39.60 0.00 49.40 7.58 12.60 13.31 0.00 15.20 12.48 8.60 19.61 33.22 39.95 34.04 14.08 24.16 11 E2b_E4a NovelJunction 0 0.00 0.00 9.25 16.85 0.00 2.27 2.03 9.61 0.00 27.26 0.00 0.00 0.00 0.00 9.64 7.60 0.00 22.34 14.31 17.64 28.66 11.76 8.37 12 ER2c ExonRegion 0 0.00 2.71 30.63 4.09 8.03 3.67 3.97 20.74 2.47 39.38 1.93 8.66 4.69 0.00 9.67 8.92 3.30 12.93 19.11 18.44 33.79 6.25 14.68 13 I2 Intron 0 0.29 0.56 10.63 9.29 1.85 4.07 1.47 6.78 9.18 5.21 0.00 0.00 0.00 1.67 2.79 1.65 0.00 14.51 22.96 11.50 3.66 1.73 9.36 14 I2_SR1 SilentIntronRegion 0 0.29 0.57 10.68 9.34 1.86 4.09 1.48 6.81 9.23 5.24 0.00 0.00 0.00 1.68 2.81 1.66 0.00 14.58 23.09 11.56 3.68 1.74 9.40 15 E3_Aa NovelBoundary 0 3.48 9.01 46.63 81.21 3.31 5.00 14.26 11.71 32.61 12.60 0.00 6.30 0.00 0.00 0.00 0.00 0.00 44.48 58.17 25.82 15.26 3.00 8.11 16 ER3a ExonRegion 0 2.12 3.39 12.66 4.54 3.57 1.22 7.94 7.49 4.53 16.82 0.64 7.22 1.56 0.00 2.90 2.97 1.10 6.16 6.37 5.67 12.49 4.17 4.89 17 ER3b ExonRegion 0 0.03 1.35 41.49 11.91 5.32 3.02 5.40 28.17 24.67 38.83 0.48 8.21 3.05 8.46 13.75 3.51 1.59 17.47 23.54 6.77 24.93 25.49 22.50 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E3_Db NovelBoundary 0 20.74 15.92 100.79 136.45 51.36 30.38 46.64 33.52 68.37 25.44 0.00 0.00 0.00 2.35 0.00 0.00 0.00 86.89 62.50 22.63 22.92 3.12 51.22 20 ER3c ExonRegion 0 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 21 I3 Intron 0 18.47 61.62 62.14 100.74 74.75 25.44 83.76 42.50 46.98 48.53 0.03 3.51 9.98 5.94 6.18 2.33 1.08 44.37 41.21 48.76 10.93 11.23 17.51 22 I3_SR1 SilentIntronRegion 0 9.38 29.04 34.38 70.85 39.74 17.01 50.15 40.77 27.54 35.71 0.00 3.65 13.49 3.23 4.46 1.37 0.19 10.82 21.09 22.78 4.44 6.00 8.28 23 I3_AR2 ActiveIntronRegion 0 20.78 126.32 58.08 140.70 80.40 24.86 98.31 58.87 61.13 63.73 0.00 3.92 13.54 2.32 4.31 0.33 0.73 10.16 20.88 62.44 2.76 11.05 8.54 24 I3_AR3 ActiveIntronRegion 0 4.56 40.75 26.11 51.48 23.98 7.19 28.11 21.07 27.74 24.08 0.00 0.00 0.00 0.37 1.90 0.00 0.00 3.13 10.66 19.48 2.12 5.05 2.82 25 I3_AR4 ActiveIntronRegion 0 59.57 335.96 44.11 68.14 178.16 43.78 200.22 29.38 33.35 21.79 0.00 0.00 14.17 2.40 10.34 2.54 0.00 5.00 20.51 87.90 7.85 18.36 16.82 26 I3_AR5 ActiveIntronRegion 0 2.12 60.40 41.05 64.87 51.37 11.37 66.60 30.25 33.72 22.14 0.00 0.00 4.69 1.30 2.61 0.59 0.00 0.74 1.91 25.74 1.98 5.00 9.10 27 I3_SR2 SilentIntronRegion 0 17.62 70.63 76.13 129.96 80.52 16.36 86.00 43.48 45.39 42.43 0.00 5.23 11.35 1.96 4.75 1.35 0.00 8.19 16.23 22.75 1.42 9.19 6.45 28 I3_AR6 ActiveIntronRegion 0 34.17 88.80 109.08 198.12 148.15 40.71 148.52 62.83 57.20 55.77 0.50 5.19 22.74 10.33 10.42 4.14 2.54 53.63 50.03 59.22 10.38 17.94 27.54 29 I3_SR3 SilentIntronRegion 0 16.24 54.88 83.40 134.93 99.50 34.91 100.86 46.38 54.58 53.22 0.00 3.78 10.04 5.65 6.19 2.01 1.33 41.64 45.29 42.64 11.83 9.40 19.35 30 I3_AR8 ActiveIntronRegion 0 49.47 82.87 117.08 167.83 113.71 35.07 106.73 67.94 62.82 61.10 0.00 5.00 10.21 10.34 10.01 7.06 1.65 82.90 68.88 77.12 22.85 17.70 29.37 31 I3_SR4 SilentIntronRegion 0 13.88 38.37 41.40 49.51 52.91 16.82 51.28 21.54 27.99 29.17 0.00 1.22 4.42 4.73 4.05 1.70 0.31 42.96 32.70 38.63 9.63 5.34 14.94 32 I3_AR10 ActiveIntronRegion 0 18.18 55.42 61.62 78.14 86.61 41.57 114.56 44.88 63.51 68.67 0.00 4.42 7.93 11.63 9.79 4.84 3.32 109.90 105.90 84.48 19.79 23.10 37.31 33 I3_SR5 SilentIntronRegion 0 13.04 32.44 47.12 45.43 39.40 20.63 67.95 32.00 48.07 52.81 0.00 2.44 3.61 8.33 6.66 2.82 1.13 86.12 52.64 58.83 21.31 14.72 24.56 34 I3_AR11 ActiveIntronRegion 0 14.26 28.86 43.93 41.03 47.01 15.00 52.25 28.50 58.44 54.28 0.00 4.29 11.61 16.64 12.65 3.57 3.18 94.59 64.37 71.66 28.64 17.04 23.34 35 ER4a ExonRegion 0 4.31 9.75 55.91 55.71 15.25 13.04 23.40 47.15 63.91 68.07 0.00 6.38 2.93 12.71 21.59 2.68 0.93 84.56 48.54 37.85 29.10 44.66 23.92 36 IG8 Intergenic 0 15.58 43.29 61.60 114.39 131.36 160.82 129.23 124.76 100.97 134.49 0.00 3.83 7.78 8.85 7.43 2.97 1.14 121.83 115.98 85.17 90.06 37.46 52.71 37 IG8_SR5 SilentIntergenicRegion 0 9.13 21.95 36.66 50.91 51.24 42.36 66.70 48.92 56.46 59.94 0.00 0.40 5.48 5.98 4.31 1.40 0.35 89.31 83.60 56.76 68.95 19.21 43.76 38 IG8_AR7 ActiveIntergenicRegion 0 23.59 34.98 58.77 79.98 54.11 80.43 86.09 88.30 124.76 125.88 0.00 2.24 3.15 11.59 7.35 2.20 1.45 200.67 98.46 116.72 122.26 25.68 66.33 39 IG8_AR6 ActiveIntergenicRegion 0 13.35 31.60 46.00 82.51 75.13 79.42 79.44 89.08 125.22 132.69 0.00 0.00 3.61 19.36 7.81 4.80 0.00 176.82 98.01 110.64 119.85 25.64 71.61 40 IG8_AR5 ActiveIntergenicRegion 0 9.38 51.23 58.16 99.84 51.25 84.01 105.83 99.56 139.95 130.63 0.00 3.14 8.17 9.80 10.60 9.94 0.00 199.49 169.70 115.70 121.55 33.19 90.18 41 IG8_AR4 ActiveIntergenicRegion 0 6.35 47.40 70.79 93.41 65.25 108.34 140.54 140.27 159.33 145.22 0.00 0.00 5.77 12.74 14.06 6.40 0.00 197.42 234.74 138.62 127.31 53.69 114.30 42 IG8_SR4 SilentIntergenicRegion 0 10.52 31.58 74.74 97.67 71.37 82.35 105.69 92.56 111.59 109.28 0.00 3.17 9.83 11.53 7.72 3.63 0.68 162.59 163.56 114.21 124.83 33.57 70.15 43 IG8_AR3 ActiveIntergenicRegion 0 11.54 34.39 65.15 132.38 80.47 117.91 98.88 79.54 98.12 116.29 0.00 2.45 4.30 9.11 10.03 4.93 2.55 165.31 132.84 103.65 134.49 37.24 61.47 44 IG8_SR3 SilentIntergenicRegion 0 16.46 33.89 63.29 112.49 80.53 107.26 110.22 77.87 111.35 113.89 0.00 3.45 7.42 13.70 10.71 4.79 2.97 169.67 145.09 102.58 136.23 44.46 71.03 45 IG8_AR2 ActiveIntergenicRegion 0 24.58 69.68 95.60 185.60 156.90 202.38 173.58 122.37 138.84 143.93 0.00 8.63 13.92 11.58 10.42 4.13 1.04 154.19 165.81 112.12 108.02 56.61 65.67 46 IG8_SR2 SilentIntergenicRegion 0 15.62 36.63 53.47 71.83 80.72 96.71 70.97 29.63 37.55 35.60 0.00 1.55 2.51 4.87 7.74 0.65 0.72 51.24 55.28 64.65 30.59 21.25 25.49 47 IG8_SR1 SilentIntergenicRegion 0 10.01 47.44 29.59 101.99 318.40 380.07 197.68 326.39 82.08 271.11 0.00 2.18 3.32 1.27 1.76 0.50 0.37 18.22 29.61 31.28 13.86 30.04 12.59