Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAHD2A Gene 0 29.50 14.52 66.76 50.41 27.03 33.84 25.05 48.11 31.20 37.08 26.89 9.12 11.46 25.30 29.14 24.40 18.34 25.92 26.87 21.76 24.47 12.42 19.25 2 445649 Transcript 0 1.06 1.02 6.61 0.65 2.68 3.36 1.55 2.07 2.08 3.61 1.24 0.00 0.00 0.54 6.68 5.59 1.82 4.46 1.93 1.06 1.51 5.30 1.47 3 447036 Transcript 0 3.78 0.00 3.05 1.53 0.00 0.00 0.00 3.53 0.00 1.48 17.00 6.30 6.17 7.36 9.64 0.00 4.30 0.00 4.33 0.00 2.84 2.39 0.00 4 233379 Transcript 0 22.07 10.69 45.28 40.39 20.57 27.29 16.48 41.53 24.25 27.71 18.61 4.65 5.54 8.26 14.14 10.14 5.95 12.34 17.88 16.12 22.48 5.68 9.58 5 418606 Transcript 0 0.00 0.00 8.01 0.00 0.00 0.00 0.00 4.85 0.00 2.71 0.00 0.00 0.00 4.77 4.45 3.93 3.65 3.56 4.52 3.26 0.00 3.12 0.00 6 463940 Transcript 0 2.02 5.63 20.50 14.14 4.80 6.85 9.13 13.88 8.93 9.04 9.46 3.78 4.68 5.61 5.35 4.82 5.42 7.18 7.14 8.13 4.37 2.11 2.94 7 470100 Transcript 0 9.10 7.04 36.83 26.54 5.98 12.37 8.58 13.94 15.24 15.50 9.36 3.58 4.07 12.53 12.07 17.45 11.05 18.50 14.53 10.96 10.48 3.49 12.03 8 480338 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 2.12 2.03 2.45 0.00 5.35 6.72 1.32 0.00 1.24 0.00 0.00 0.00 0.00 1.08 0.00 2.97 0.00 0.00 0.00 2.13 0.00 2.08 2.94 10 ER1b ExonRegion 0 4.94 12.20 7.76 0.45 7.14 11.61 9.27 0.58 3.29 1.91 4.51 0.00 0.00 7.04 8.70 11.89 1.10 0.00 4.25 4.96 2.94 2.78 10.77 11 ER1c ExonRegion 0 32.11 38.58 41.40 5.91 33.59 75.44 63.02 6.81 9.82 15.17 56.98 2.26 0.00 44.10 52.98 45.31 31.08 9.58 61.06 19.28 44.35 24.10 25.48 12 E1_Ad KnownBoundary 0 44.60 30.39 75.93 28.00 43.80 93.87 67.75 29.82 20.54 40.10 70.18 5.70 0.00 45.32 60.33 31.62 38.24 62.39 26.17 32.66 22.73 20.02 27.49 13 ER1d ExonRegion 0 13.77 10.27 31.75 8.03 6.47 15.06 11.69 7.32 6.08 11.54 34.12 6.47 3.88 20.07 26.11 11.85 18.05 10.38 7.47 11.06 20.38 5.25 8.30 14 E1_Da KnownBoundary 0 0.00 0.00 6.80 0.00 0.00 0.00 1.72 2.09 2.72 3.49 4.16 0.00 0.00 2.30 0.00 0.00 8.23 1.95 0.00 6.26 16.06 0.00 4.18 15 E1a_E2b KnownJunction 0 3.78 0.00 3.05 1.53 0.00 0.00 0.00 3.53 0.00 1.48 17.00 6.30 6.17 7.36 9.64 0.00 4.30 0.00 4.33 0.00 2.84 2.39 0.00 16 E1a_E3a KnownJunction 0 3.33 5.92 31.25 6.39 0.00 5.45 0.00 16.47 5.03 4.38 38.27 0.00 0.00 4.77 18.79 4.36 4.30 6.59 9.60 6.52 41.82 0.00 0.00 17 ER1e ExonRegion 0 0.00 1.73 17.14 3.54 1.00 0.00 1.50 6.96 1.75 10.62 9.55 0.00 1.64 15.84 17.31 10.90 17.38 9.01 13.25 12.16 15.65 7.74 7.83 18 E1_Db NovelBoundary 0 0.00 0.00 2.48 4.96 0.00 0.00 2.12 1.81 3.50 4.59 6.84 0.00 0.00 7.30 0.00 12.05 9.54 15.71 0.00 9.01 19.89 0.00 8.19 19 E1b_E2b KnownJunction 0 0.00 0.00 8.01 0.00 0.00 0.00 0.00 4.85 0.00 2.71 0.00 0.00 0.00 4.77 4.45 3.93 3.65 3.56 4.52 3.26 0.00 3.12 0.00 20 E1b_E3a KnownJunction 0 0.00 0.00 10.76 1.30 0.00 0.00 1.77 4.15 2.92 7.23 2.47 0.00 0.00 0.00 13.35 8.20 3.65 8.91 3.86 0.00 3.03 8.51 0.00 21 I1 Intron 0 3.97 4.88 11.65 8.61 6.83 9.70 14.56 9.09 11.26 9.88 8.20 6.39 6.06 13.30 7.95 10.82 8.92 12.44 12.43 13.41 13.81 5.08 7.82 22 I1_AR1 ActiveIntronRegion 0 0.91 3.96 5.92 5.71 2.31 5.55 8.01 5.01 5.97 10.34 5.85 1.54 1.67 9.02 5.57 3.85 7.13 6.15 3.44 10.58 12.38 4.50 1.90 23 I1_SR1 SilentIntronRegion 0 4.20 5.14 11.48 9.30 7.13 8.40 15.75 10.39 13.47 11.22 9.65 8.08 8.13 15.26 9.73 13.41 9.03 13.32 16.33 14.10 14.46 6.41 9.03 24 I1_AR2 ActiveIntronRegion 0 6.39 5.80 18.99 11.24 11.22 16.65 18.27 11.23 12.37 8.60 8.43 6.39 5.83 12.64 6.29 11.51 12.18 18.18 12.29 15.04 16.26 3.50 9.86 25 I1_SR2 SilentIntronRegion 0 1.50 1.44 1.28 0.00 0.00 7.64 8.20 0.00 1.24 0.00 0.00 4.93 0.00 9.93 4.39 4.05 0.00 0.00 2.26 8.84 1.53 0.00 6.20 26 E2_Aa NovelBoundary 0 13.56 19.01 20.52 7.52 11.38 22.54 28.57 6.78 13.02 17.25 4.21 6.00 5.68 18.60 16.19 7.52 8.23 8.00 31.62 9.20 2.53 2.57 19.46 27 ER2a ExonRegion 0 0.53 0.00 3.37 0.34 0.00 1.83 0.00 1.73 0.00 1.15 10.15 3.25 1.17 3.25 4.35 0.74 3.30 1.39 1.59 0.53 1.10 1.04 0.73 28 ER2b ExonRegion 0 3.95 6.83 21.32 8.06 7.36 10.28 8.96 11.99 11.41 13.69 48.38 11.98 7.54 33.12 20.61 20.83 20.91 24.15 10.83 6.33 20.52 10.40 16.73 29 E2_Da NovelBoundary 0 10.74 26.71 40.30 34.19 40.15 41.91 24.55 38.73 22.48 25.57 9.48 6.00 13.64 22.72 9.64 21.70 40.21 28.31 18.82 25.12 8.71 10.84 34.49 30 E2a_E3a KnownJunction 0 2.96 6.31 20.49 6.86 4.33 0.00 17.44 8.34 2.95 12.14 39.43 13.50 0.00 24.25 10.26 27.43 17.02 19.86 11.95 3.20 3.15 18.92 26.55 31 I2 Intron 0 10.79 0.00 13.63 8.98 11.83 8.73 9.45 8.76 10.01 9.88 11.83 1.21 5.25 14.10 12.71 17.18 8.98 11.55 15.16 7.96 12.74 4.94 11.98 32 I2_SR1 SilentIntronRegion 0 11.17 0.00 14.10 9.26 12.23 9.02 9.78 9.02 10.34 10.18 12.18 1.25 5.40 14.55 13.15 17.75 9.17 11.93 15.69 8.23 13.18 5.12 12.39 33 E3_Aa NovelBoundary 0 29.86 15.92 34.56 38.99 14.77 11.98 8.35 28.51 34.87 36.16 14.64 0.00 0.00 19.66 10.38 27.17 15.15 50.66 21.18 36.24 19.03 13.59 30.99 34 ER3a ExonRegion 0 15.54 19.42 126.75 35.85 23.41 40.85 34.35 35.49 30.52 39.55 113.18 13.13 16.79 83.79 83.82 58.74 69.69 65.96 54.28 35.77 73.02 37.09 35.65 35 E3_Da NovelBoundary 0 10.89 6.25 4.58 4.46 14.69 5.34 9.63 4.19 5.50 7.63 4.74 0.00 0.00 4.71 0.00 3.67 3.65 6.18 7.53 8.82 13.59 5.51 0.00 36 E3b_E4b KnownJunction 0 28.67 53.81 108.33 30.17 25.72 50.03 36.13 39.31 28.04 35.65 99.92 18.16 20.29 104.72 134.25 57.25 80.79 61.52 35.67 18.92 82.29 19.23 18.52 37 ER3b ExonRegion 0 25.40 50.84 122.54 31.35 26.76 47.68 38.39 32.84 27.17 37.85 86.98 25.98 18.76 99.07 116.05 53.50 79.22 75.76 41.41 19.15 70.52 27.09 20.56 38 E4_Aa NovelBoundary 0 13.71 0.00 6.83 7.03 0.00 2.61 14.13 4.27 7.55 9.67 9.48 0.00 6.17 4.71 8.90 4.19 4.11 4.97 3.95 2.56 0.00 3.12 0.00 39 E4_Ab NovelBoundary 0 7.48 0.00 4.91 5.33 3.48 0.00 0.00 4.27 4.92 2.77 5.05 6.00 0.00 0.00 0.00 0.00 8.23 0.00 0.00 5.37 10.81 2.39 0.00 40 ER4a ExonRegion 0 6.35 13.73 32.47 8.18 6.69 11.92 12.91 9.07 6.48 10.90 24.16 6.49 4.69 28.42 30.46 14.12 23.11 18.94 10.35 5.32 21.49 8.33 7.34 41 ER4b ExonRegion 0 33.13 35.35 151.48 51.34 18.20 40.48 43.20 45.86 31.92 50.99 99.28 17.99 27.03 97.60 94.97 68.84 72.91 100.59 61.02 44.73 73.46 29.37 52.10 42 E4_Da KnownBoundary 0 44.45 68.74 245.82 102.45 20.97 70.02 78.70 57.46 80.29 80.69 124.87 12.75 6.82 119.55 177.39 153.04 86.77 130.33 89.70 72.61 69.07 32.33 48.57 43 ER4c ExonRegion 0 19.70 19.98 124.16 38.77 15.20 24.00 22.70 44.36 31.27 56.82 98.12 13.15 13.78 78.72 98.46 70.19 64.39 84.65 41.88 41.19 66.17 28.99 33.35 44 E4_Db KnownBoundary 0 6.74 15.26 34.39 9.59 8.49 24.53 16.52 19.59 19.15 16.12 16.95 0.00 6.82 17.31 5.07 16.92 9.35 18.36 7.91 6.26 19.77 3.00 11.69 45 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E4b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER4d ExonRegion 0 3.51 11.26 37.63 27.95 9.60 11.87 18.26 26.03 17.86 16.94 8.77 4.31 8.19 7.97 6.34 8.89 7.54 12.97 12.69 15.72 7.64 3.18 5.16 48 I4 Intron 0 5.75 6.80 17.75 17.61 5.87 6.71 7.75 17.23 10.39 11.07 4.85 6.12 3.26 4.96 4.26 6.52 4.14 9.89 9.32 9.34 7.37 3.48 4.60 49 I4_SR2 SilentIntronRegion 0 5.76 6.81 17.78 17.64 5.88 6.72 7.76 17.26 10.41 11.10 4.86 6.13 3.26 4.97 4.27 6.54 4.15 9.91 9.34 9.36 7.38 3.49 4.61 50 E5_Aa NovelBoundary 0 3.78 22.17 29.89 42.49 0.00 15.84 25.88 28.01 15.19 23.24 4.26 6.00 0.00 4.83 0.00 4.36 17.67 18.28 22.97 15.79 6.12 0.00 4.35 51 ER5a ExonRegion 0 18.87 8.10 102.91 39.39 16.32 17.18 12.64 32.38 19.06 29.72 92.13 10.61 25.17 65.10 73.93 37.85 40.66 80.81 35.25 28.40 53.55 16.29 27.31 52 E5_Da KnownBoundary 0 17.11 2.63 26.34 23.94 0.00 2.56 2.08 27.85 17.71 11.93 9.63 0.00 0.00 4.77 0.00 4.36 17.48 16.83 4.42 14.00 11.18 3.12 20.49 53 E5a_E5b KnownJunction 0 32.89 6.12 105.14 24.77 31.83 27.54 16.74 19.59 14.87 13.94 134.19 37.06 35.22 95.36 169.23 42.13 47.87 60.23 69.08 15.21 53.50 12.12 45.50 54 ER5b ExonRegion 0 16.44 10.01 73.67 53.07 6.90 21.17 15.98 27.87 30.48 31.00 18.72 7.16 8.15 25.06 24.14 34.91 22.10 36.99 29.06 21.34 20.96 6.99 21.13 55 E5_Ab KnownBoundary 0 25.04 6.38 44.53 43.18 7.72 16.41 16.69 27.44 19.44 35.05 23.95 18.91 0.00 28.78 24.11 21.28 8.88 30.01 25.51 17.32 20.57 6.18 20.57 56 ER5c ExonRegion 0 58.50 20.32 142.14 59.86 21.26 26.77 40.22 35.32 27.71 48.61 113.71 28.62 28.46 85.14 126.78 59.48 55.77 61.90 44.91 29.72 87.94 25.25 36.40 57 E5_Db NovelBoundary 0 3.56 12.23 11.74 17.91 4.07 20.84 15.02 10.97 13.25 23.93 7.48 0.00 0.00 0.00 0.00 19.48 0.00 23.63 4.24 8.63 3.15 2.94 4.35 58 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 I5 Intron 0 13.27 15.64 29.34 29.75 15.07 21.08 19.52 21.23 17.02 25.98 7.61 6.04 6.66 8.74 10.25 11.16 10.28 17.12 12.25 18.60 10.99 5.63 12.10 60 I5_AR1 ActiveIntronRegion 0 8.98 12.37 24.52 27.77 13.41 17.90 18.98 21.99 16.58 23.69 8.03 7.67 5.97 7.55 9.44 9.99 10.90 18.50 7.08 19.05 13.11 5.59 9.45 61 I5_SR1 SilentIntronRegion 0 4.87 10.69 25.83 23.03 9.93 12.45 4.93 14.81 22.73 24.12 8.20 11.16 14.12 7.33 10.28 5.05 4.55 16.96 12.46 16.62 12.63 2.71 15.63 62 I5_AR2 ActiveIntronRegion 0 18.73 20.68 30.90 34.47 15.22 22.75 16.54 24.61 16.70 29.62 6.41 4.76 6.45 9.66 11.12 13.54 13.59 18.32 20.39 20.32 8.62 6.85 17.60 63 I5_AR3 ActiveIntronRegion 0 23.28 29.69 45.34 50.15 31.84 13.20 15.62 35.78 18.28 32.00 3.87 4.33 9.38 8.77 8.70 22.89 9.90 12.75 35.68 24.04 4.63 3.96 7.93 64 I5_SR2 SilentIntronRegion 0 16.95 16.58 37.13 29.37 19.27 28.56 30.07 17.56 16.35 26.30 8.43 3.01 5.43 10.39 10.82 12.12 7.20 13.60 10.36 16.39 10.02 5.34 9.01 65 E6_Aa NovelBoundary 0 7.41 3.22 21.70 23.67 0.00 0.00 4.46 11.75 15.86 11.07 2.68 0.00 0.00 0.00 6.30 0.00 4.58 9.45 0.00 3.26 3.09 6.25 4.35 66 ER6a ExonRegion 0 61.05 44.20 145.93 55.90 41.04 49.87 49.47 50.36 32.99 47.58 91.41 27.41 24.22 105.63 143.76 105.99 51.91 71.06 74.08 34.49 84.93 40.05 58.44 67 E6_Da NovelBoundary 0 56.23 34.93 60.70 37.82 56.96 53.83 27.78 60.17 39.67 31.56 23.16 0.00 6.33 22.01 31.15 15.47 21.41 42.28 32.47 27.04 35.15 17.45 21.08 68 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 I6 Intron 0 6.44 8.51 13.90 13.90 11.20 10.47 13.10 9.80 5.60 10.42 3.68 5.43 1.47 10.11 13.90 4.52 6.28 4.19 9.70 6.48 10.06 4.76 6.71 70 I6_AR1 ActiveIntronRegion 0 6.53 8.63 14.11 14.10 11.37 10.63 13.30 9.95 5.69 10.58 3.73 5.51 1.49 10.26 14.11 4.59 6.38 4.26 9.85 6.56 10.22 4.83 6.81 71 E7_Aa NovelBoundary 0 27.26 11.77 44.23 23.27 12.14 61.67 25.88 27.68 13.77 31.78 9.16 0.00 6.66 19.31 10.75 18.11 31.32 28.98 20.52 20.52 14.83 19.17 22.88 72 ER7a ExonRegion 0 10.99 4.60 79.33 25.04 24.36 25.63 22.09 15.67 14.58 22.13 49.93 15.50 14.92 40.22 56.64 34.48 42.54 27.72 28.09 13.76 43.15 15.01 19.29 73 E7_Da NovelBoundary 0 3.78 6.45 21.58 36.86 12.73 20.16 11.17 12.36 12.15 18.16 7.42 0.00 6.82 5.77 0.00 8.72 9.54 4.85 14.40 6.52 2.90 3.12 8.37 74 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 E7_Db NovelBoundary 0 21.04 22.17 13.60 37.12 15.20 19.08 21.68 18.11 7.49 33.68 21.58 5.70 0.00 14.66 25.71 8.20 21.13 17.00 27.39 31.38 15.01 8.33 4.35 77 ER7b ExonRegion 0 1.76 4.07 0.00 0.00 5.05 3.57 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 2.94 78 I7 Intron 0 9.64 8.33 4.16 1.85 2.44 13.36 12.66 4.69 5.03 3.89 6.16 1.62 1.76 9.44 7.85 2.71 4.51 3.79 8.70 6.78 7.02 2.85 0.00 79 I7_AR1 ActiveIntronRegion 0 9.81 8.49 4.22 1.87 2.48 13.60 12.89 4.78 5.11 3.96 6.27 1.65 1.79 9.61 7.99 2.76 4.59 3.86 8.86 6.91 7.09 2.90 0.00 80 E8_Aa NovelBoundary 0 11.11 12.56 37.82 38.16 18.59 15.84 27.20 39.18 17.42 33.68 2.47 0.00 8.28 9.18 23.36 8.72 3.55 29.89 9.60 18.54 0.00 0.00 8.19 81 ER8a ExonRegion 0 46.14 21.94 110.40 58.15 26.25 29.80 26.64 48.12 31.78 48.17 50.98 12.15 22.03 52.33 72.75 51.98 38.45 44.29 48.68 36.36 35.63 25.66 34.02 82 E8_Da KnownBoundary 0 254.27 103.60 128.35 86.24 100.08 87.17 86.87 76.19 62.30 50.80 64.86 20.26 53.08 90.71 178.63 118.35 77.98 62.43 100.05 90.06 45.65 16.10 70.00 83 ER8b ExonRegion 0 23.32 12.52 44.22 50.52 23.37 35.23 24.51 43.77 30.59 37.74 8.75 4.94 5.61 9.56 11.02 10.93 7.61 16.74 22.54 22.65 11.33 7.81 12.79 84 E8_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 ER8c ExonRegion 0 24.05 10.94 57.36 42.91 26.36 33.57 27.62 66.20 45.23 44.00 11.41 5.52 13.03 19.25 14.15 18.58 15.67 27.10 22.93 17.85 20.23 9.73 19.86 86 E8_Db KnownBoundary 0 38.82 17.30 51.89 67.02 42.44 54.29 38.91 75.70 49.85 62.99 14.69 0.00 20.13 29.67 11.37 39.22 13.56 25.91 27.20 24.03 19.15 13.72 19.63 87 ER8d ExonRegion 0 39.55 13.64 60.36 64.26 38.33 41.18 24.92 64.34 37.13 41.02 8.81 9.01 11.01 10.44 12.62 15.12 5.93 13.70 21.49 19.19 14.30 9.24 15.95