Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KCNIP3 Gene 0 1.11 0.47 14.27 2.74 1.28 1.05 1.46 2.77 5.94 4.09 0.00 0.00 0.00 0.01 0.00 0.00 0.00 3.00 3.64 2.50 18.80 25.43 28.51 2 295225 Transcript 0 0.00 1.53 1.43 0.11 2.01 0.00 1.93 0.00 2.37 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 4.17 1.29 0.95 3.06 3 486055 Transcript 0 0.49 1.18 7.45 5.44 1.71 2.24 1.77 6.47 9.08 6.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.92 11.51 8.16 1.67 5.28 4.10 4 475491 Transcript 0 0.10 0.03 1.93 0.18 0.12 0.06 0.46 0.23 0.58 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.63 0.74 0.00 0.28 1.11 5 461336 Transcript 0 1.53 1.58 23.19 8.22 2.97 3.76 3.16 5.71 10.82 8.62 0.00 0.00 0.00 0.07 0.00 0.00 0.00 11.66 8.82 7.53 0.49 4.04 5.53 6 377181 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 1.82 7 360990 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 468529 Transcript 0 0.00 0.00 0.12 1.09 0.17 0.12 1.08 1.05 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.79 48.00 58.15 9 ER1a ExonRegion 0 0.00 1.53 1.43 0.11 2.01 0.00 1.93 0.00 2.37 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 4.17 1.29 0.95 3.06 10 E1_Ac KnownBoundary 0 0.00 3.16 1.83 0.00 0.00 0.00 2.25 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 4.14 9.14 3.15 0.00 4.35 11 E1_Ad KnownBoundary 0 0.00 3.29 5.62 4.59 8.66 0.00 12.98 0.00 10.73 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.07 23.53 15.15 0.00 6.25 12.38 12 ER1b ExonRegion 0 0.00 4.07 4.57 1.36 8.03 0.00 8.43 0.00 4.94 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.02 1.74 11.80 2.20 4.17 5.87 13 ER1c ExonRegion 0 0.94 4.07 6.67 1.36 8.03 0.00 11.33 0.00 7.41 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 14.16 14.89 2.20 5.09 7.83 14 ER1d ExonRegion 0 0.94 0.84 14.01 0.69 1.89 0.86 5.37 2.07 10.59 5.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.78 11.51 7.09 0.35 5.66 6.48 15 E1a_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 1.52 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.61 0.00 0.00 2.51 0.00 16 E1a_E3a KnownJunction 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E5a KnownJunction 0 0.00 0.00 6.59 0.00 0.00 0.00 0.00 2.14 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 18 E1a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2_Aa NovelBoundary 0 0.00 3.35 4.44 8.09 0.00 0.00 0.00 2.05 5.27 8.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.73 13.18 11.63 3.15 0.00 4.35 20 ER2a ExonRegion 0 0.99 2.37 13.07 10.88 3.43 4.49 3.55 11.42 16.89 12.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.83 18.41 16.32 3.34 8.05 8.21 21 E2_Da NovelBoundary 0 3.78 3.35 22.59 17.65 10.78 2.90 4.11 16.59 12.59 16.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.26 48.47 17.77 3.15 31.29 7.68 22 I2 Intron 0 1.48 2.12 20.20 8.51 3.17 4.82 5.57 8.20 15.96 12.41 0.06 0.06 0.00 0.11 0.00 0.00 0.00 15.15 10.24 12.51 2.40 6.67 7.06 23 I2_AR1 ActiveIntronRegion 0 0.67 1.99 17.20 6.66 2.62 4.64 5.17 6.99 15.16 11.35 0.00 0.00 0.00 0.12 0.00 0.00 0.00 13.41 7.98 12.12 2.16 6.37 7.87 24 I2_SR1 SilentIntronRegion 0 1.61 0.73 22.97 8.59 3.86 3.88 6.38 9.05 18.05 15.21 0.00 0.32 0.00 0.24 0.00 0.00 0.00 20.93 11.99 14.26 4.19 7.92 7.06 25 I2_AR2 ActiveIntronRegion 0 2.66 3.08 23.30 11.34 3.65 5.65 5.73 9.60 16.05 12.48 0.20 0.00 0.00 0.00 0.00 0.00 0.00 14.64 12.77 12.16 1.77 6.43 5.82 26 E3_Aa NovelBoundary 0 3.63 2.76 43.29 13.78 11.46 2.21 11.53 11.46 13.51 30.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.62 8.85 5.31 0.00 0.00 8.28 27 ER3a ExonRegion 0 3.05 3.16 44.58 16.44 5.93 7.52 6.31 11.42 21.63 17.24 0.00 0.00 0.00 0.15 0.00 0.00 0.00 23.32 17.64 15.06 0.98 8.08 11.07 28 E3_Da NovelBoundary 0 9.04 5.13 69.10 24.21 0.00 5.17 2.12 21.32 35.01 25.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.61 12.05 19.37 6.30 11.08 7.77 29 I3_AR1 ActiveIntronRegion 0 3.52 4.44 30.57 9.19 5.84 4.19 5.30 6.43 15.79 9.15 0.00 0.00 0.00 0.07 0.11 0.00 0.00 7.64 10.93 7.19 1.26 3.68 5.34 30 I3_SR1 SilentIntronRegion 0 0.60 0.50 13.21 3.42 2.03 1.36 1.38 2.50 8.02 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.68 3.54 0.47 1.53 2.31 31 I3_AR2 ActiveIntronRegion 0 0.73 0.29 12.95 3.68 1.79 1.82 1.34 3.04 10.38 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 2.90 2.41 0.15 0.00 1.35 32 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER5a ExonRegion 0 0.65 0.00 11.02 0.32 1.05 0.00 0.34 2.33 7.49 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 4.45 1.31 0.04 2.64 3.24 34 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E5a_E8a KnownJunction 0 0.00 0.00 12.68 2.06 7.89 0.00 1.72 2.30 9.78 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 14.31 0.00 0.00 8.70 7.34 36 ER5b ExonRegion 0 0.10 0.03 1.93 0.18 0.12 0.06 0.46 0.23 0.58 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.63 0.74 0.00 0.28 1.11 37 ER6a ExonRegion 0 0.00 0.00 0.24 0.12 0.35 0.24 0.12 0.38 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.36 10.96 17.97 38 E6a_E8a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 2.03 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.22 85.05 98.34 39 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 5.47 40 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER8a ExonRegion 0 1.63 0.00 17.88 2.64 2.78 0.51 2.23 3.58 6.14 5.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 2.70 1.74 50.12 57.72 66.04 42 E8a_E9a KnownJunction 0 6.96 0.00 13.93 5.93 3.40 2.67 2.08 4.31 13.22 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.04 0.00 40.96 76.17 87.16 43 E9_Aa NovelBoundary 0 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 19.38 44 ER9a ExonRegion 0 2.54 0.00 18.24 6.21 0.69 1.76 1.27 5.93 16.27 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 6.83 2.40 70.71 93.91 146.83 45 E9_Da NovelBoundary 0 0.00 0.00 6.71 1.27 0.00 0.00 0.00 0.00 5.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.72 0.00 3.33 46 E9a_E10a KnownJunction 0 3.78 0.00 23.98 5.99 0.00 0.00 0.00 4.11 12.59 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 3.86 3.26 59.62 127.18 127.28 47 ER10a ExonRegion 0 3.76 0.00 18.57 4.26 3.50 0.00 0.22 2.75 12.72 3.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 1.70 1.32 57.61 70.46 71.39 48 E10a_E11a KnownJunction 0 0.00 0.00 14.78 5.53 0.00 0.00 1.90 1.68 14.03 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.34 3.26 78.21 72.75 55.23 49 I10 Intron 0 0.34 0.10 2.97 0.50 0.26 0.27 0.38 0.16 2.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.63 0.29 6.48 13.43 18.79 50 I10_SR1 SilentIntronRegion 0 0.34 0.24 1.91 0.41 0.32 0.22 0.37 0.10 1.66 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 1.02 0.34 5.83 10.87 18.65 51 I10_AR2 ActiveIntronRegion 0 0.00 0.00 2.45 0.00 0.00 0.00 0.00 1.36 4.07 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.06 0.00 0.35 11.07 18.31 52 I10_AR3 ActiveIntronRegion 0 0.00 0.00 2.45 0.00 0.00 0.00 0.00 1.73 2.47 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.19 0.00 2.40 9.66 24.29 53 I10_AR4 ActiveIntronRegion 0 0.34 0.00 1.19 0.00 0.00 0.97 0.20 0.10 1.46 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 1.06 0.26 9.11 16.53 22.08 54 I10_SR2 SilentIntronRegion 0 0.81 0.00 1.80 0.58 0.00 0.17 0.45 0.00 2.13 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 7.68 9.92 17.09 55 I10_AR5 ActiveIntronRegion 0 0.31 0.00 3.57 0.00 0.00 0.00 0.46 0.00 2.06 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.28 8.17 12.35 56 I10_AR6 ActiveIntronRegion 0 0.00 0.00 5.36 0.00 0.00 0.00 0.00 0.00 5.19 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 7.06 18.93 13.75 57 I10_SR3 SilentIntronRegion 0 0.27 0.07 4.37 0.85 0.43 0.24 0.43 0.25 2.17 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.46 0.41 6.61 16.66 20.25 58 E11_Aa NovelBoundary 0 0.00 0.00 6.59 1.80 0.00 0.00 0.00 2.55 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 3.26 10.87 11.45 20.32 59 ER11a ExonRegion 0 3.21 0.96 15.62 4.16 2.95 0.00 2.56 1.33 9.78 3.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 6.11 0.59 70.36 76.24 71.89 60 E11_Da NovelBoundary 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.44 61 E11a_E12a KnownJunction 0 3.11 0.00 9.25 3.06 3.74 0.00 2.08 0.00 10.04 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 13.65 0.00 67.83 84.26 75.63 62 E12_Aa NovelBoundary 0 0.00 0.00 3.19 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 13.90 8.28 63 ER12a ExonRegion 0 0.81 0.00 15.31 3.88 3.47 0.00 1.07 2.78 8.38 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.31 3.28 3.51 63.07 79.05 85.50 64 E12a_E13a KnownJunction 0 0.00 0.00 29.04 5.09 0.00 0.00 0.00 4.27 11.40 9.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 8.19 5.88 70.43 78.75 165.43 65 E13_Aa NovelBoundary 0 0.00 2.50 3.52 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 19.21 66 ER13a ExonRegion 0 3.23 1.65 46.89 3.57 1.74 0.00 0.00 3.24 10.74 9.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.02 16.18 1.05 71.46 244.93 215.73 67 E13_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 12.38 68 E13a_E14a KnownJunction 0 10.45 0.00 55.85 3.73 3.48 0.00 0.00 2.22 16.29 14.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 13.46 0.00 97.30 301.39 204.27 69 ER14a ExonRegion 0 2.91 0.00 36.97 5.54 0.56 0.19 0.28 3.96 18.22 13.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 13.21 0.53 109.36 154.61 98.81 70 E14_Da KnownBoundary 0 2.96 0.00 32.08 7.52 0.00 0.00 1.81 4.85 20.51 11.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 2.75 99.15 119.83 56.60 71 ER14b ExonRegion 0 2.44 0.36 31.11 2.95 1.62 1.10 1.79 4.01 9.03 6.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 2.27 0.36 48.80 63.21 70.66 72 ER14c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00