Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LMAN2L Gene 0 41.52 44.83 68.27 53.53 39.80 91.73 63.24 47.72 42.41 71.62 37.19 20.93 15.49 52.43 52.40 52.88 34.18 52.44 54.75 33.85 57.03 35.93 33.61 2 449221 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 440610 Transcript 0 0.00 0.00 4.88 9.29 0.00 0.00 13.38 2.55 1.77 1.64 10.16 22.81 0.00 0.00 8.90 11.71 0.00 4.10 12.80 3.00 16.31 2.76 8.71 4 446780 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 377079 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 426463 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 434865 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 264963 Transcript 0 9.17 3.39 0.00 1.82 2.68 3.67 11.03 0.00 0.00 0.76 0.00 0.00 0.00 8.12 2.90 0.00 3.30 1.85 0.00 2.84 2.20 2.08 0.00 9 434524 Transcript 0 2.88 2.15 3.16 5.42 12.14 13.50 12.36 4.85 3.41 5.07 9.92 3.67 4.09 7.36 9.40 15.30 8.56 7.82 3.34 11.28 8.99 0.44 6.31 10 480869 Transcript 0 13.73 10.66 8.19 10.69 11.63 12.36 22.49 6.70 2.93 2.01 3.93 15.02 7.30 3.94 3.10 6.79 10.49 7.03 6.41 5.06 8.75 3.29 8.25 11 474494 Transcript 0 0.00 2.94 1.94 1.02 8.55 1.22 0.00 0.00 0.38 0.00 1.50 3.97 0.00 0.00 1.77 0.66 0.00 0.56 2.74 0.00 2.82 0.00 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.46 0.00 0.00 0.00 0.00 1.10 0.00 0.00 13 ER1b ExonRegion 0 15.20 7.67 0.00 0.00 10.34 52.18 45.86 1.65 0.28 0.73 13.27 0.00 11.30 37.58 30.73 57.82 19.21 2.02 47.78 21.66 27.35 15.34 34.44 14 ER1c ExonRegion 0 16.80 12.38 19.46 14.47 9.74 61.56 45.38 14.65 17.12 34.22 41.15 8.73 21.77 42.14 46.13 50.62 52.50 22.01 64.03 32.05 78.36 31.30 34.42 15 E1_Da NovelBoundary 0 0.00 3.29 14.34 5.43 0.00 0.00 5.83 12.90 0.00 2.85 2.37 0.00 0.00 2.53 13.35 11.36 0.00 14.14 34.92 7.93 2.59 2.33 4.27 16 E1a_E2a KnownJunction 0 6.89 17.56 93.96 68.96 0.00 2.84 14.35 57.05 48.29 118.43 51.59 12.15 0.00 142.27 75.53 133.21 41.70 138.87 235.21 72.80 75.86 86.22 55.32 17 E1a_E4b KnownJunction 0 0.00 0.00 4.29 4.13 0.00 0.00 0.00 6.08 6.37 0.00 2.68 0.00 0.00 4.94 0.00 0.00 0.00 2.40 4.71 2.75 3.15 2.94 3.84 18 E2_Aa NovelBoundary 0 12.67 14.80 7.84 23.74 11.04 10.96 45.05 9.00 5.87 2.61 2.11 6.60 0.00 2.12 11.87 3.25 28.33 20.10 8.66 0.00 2.59 10.78 6.40 19 ER2a ExonRegion 1 10.67 11.45 60.07 53.32 42.14 50.82 33.09 65.01 58.91 98.34 39.88 28.67 28.89 85.42 81.36 162.52 38.22 143.72 143.88 67.05 55.56 60.65 87.63 20 E2_Da NovelBoundary 0 13.93 5.72 15.20 8.89 16.89 13.06 18.37 8.91 2.92 10.77 0.00 12.15 14.45 2.47 0.00 7.60 0.00 15.21 8.38 3.26 9.45 5.69 6.66 21 E2a_E3a KnownJunction 0 0.00 0.00 5.12 7.59 16.72 14.03 15.68 4.85 2.84 6.12 7.48 0.00 6.82 2.41 5.19 15.21 3.65 13.47 0.00 12.02 7.29 0.00 4.27 22 E2a_E4b KnownJunction 0 5.78 27.50 33.03 22.08 48.73 217.37 105.77 68.27 57.44 103.15 39.33 6.30 7.79 65.34 51.80 23.41 51.61 60.69 50.45 51.45 70.12 39.56 24.07 23 E3_Aa NovelBoundary 0 10.59 2.57 14.81 5.89 12.82 5.79 40.36 9.82 7.29 2.15 6.74 7.65 7.95 12.24 4.45 8.12 3.55 4.19 9.51 5.56 14.76 9.06 4.35 24 ER3a ExonRegion 0 2.64 3.41 1.59 4.64 15.36 15.92 13.29 5.14 4.33 6.20 10.86 11.01 5.44 9.78 7.56 18.71 9.78 4.47 10.03 9.69 11.21 1.31 6.56 25 E3_Da NovelBoundary 1 0.00 6.71 15.26 12.29 12.82 19.36 45.40 9.36 8.83 6.18 5.05 6.30 34.41 2.83 0.00 3.25 4.77 4.60 4.61 5.75 8.77 2.51 0.00 26 E3a_E4b KnownJunction 0 6.00 3.03 2.78 4.03 4.33 10.56 8.13 4.56 3.07 2.87 11.42 0.00 0.00 9.89 15.45 11.96 12.25 5.51 0.00 12.14 8.46 0.00 8.11 27 I3 Intron 0 10.11 11.33 10.64 12.23 8.09 11.09 21.79 3.85 3.81 5.11 4.92 6.66 6.25 3.68 4.95 7.85 7.25 4.62 5.17 6.03 5.75 4.64 3.56 28 I3_SR1 SilentIntronRegion 0 7.52 9.07 9.16 9.20 4.66 7.41 18.82 2.15 3.72 4.52 4.71 6.03 6.77 3.83 5.43 9.53 6.90 4.42 5.55 7.71 5.98 5.81 3.48 29 I3_AR1 ActiveIntronRegion 0 13.61 13.28 12.29 16.92 10.57 15.02 23.15 5.99 3.84 6.27 4.77 6.35 7.37 3.98 5.58 6.51 9.29 6.37 5.28 5.34 6.78 4.62 4.17 30 I3_SR3 SilentIntronRegion 0 9.81 13.84 11.53 10.89 12.09 13.05 27.40 4.05 4.18 4.41 5.95 9.23 2.80 2.74 2.55 6.44 4.08 1.67 4.08 3.20 3.15 1.77 2.57 31 E4_Aa NovelBoundary 1 18.00 9.74 24.54 18.98 22.58 17.43 45.00 9.20 5.18 2.61 2.68 6.30 26.62 7.83 0.00 8.29 8.98 4.23 0.00 9.33 0.00 5.69 8.28 32 ER4a ExonRegion 0 13.73 10.66 8.19 10.69 11.63 12.36 22.49 6.70 2.93 2.01 3.93 15.02 7.30 3.94 3.10 6.79 10.49 7.03 6.41 5.06 8.75 3.29 8.25 33 E4_Ab KnownBoundary 0 3.63 11.12 24.69 13.22 12.05 13.23 17.58 9.94 6.22 1.61 0.00 12.30 13.15 2.47 0.00 16.24 16.74 13.89 9.32 2.49 16.74 3.12 12.63 34 ER4b ExonRegion 0 19.81 52.37 72.07 56.16 41.14 223.90 122.29 69.26 59.32 100.20 64.48 22.09 31.11 72.17 58.17 58.17 54.37 86.15 73.97 72.18 95.81 47.64 29.99 35 E4a_E5a KnownJunction 0 44.53 36.51 75.96 60.93 27.42 101.36 39.04 73.32 56.28 93.21 40.43 25.21 21.10 89.47 50.56 69.98 81.81 97.08 49.13 70.56 77.84 42.31 28.26 36 E4a_E6a KnownJunction 0 0.00 0.00 1.83 0.00 4.16 2.73 1.90 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.89 0.00 3.26 5.37 0.00 0.00 37 E4a_E7a KnownJunction 0 0.00 0.00 4.88 9.29 0.00 0.00 13.38 2.55 1.77 1.64 10.16 22.81 0.00 0.00 8.90 11.71 0.00 4.10 12.80 3.00 16.31 2.76 8.71 38 E5_Aa NovelBoundary 0 7.19 17.23 8.54 12.25 29.71 8.52 20.93 1.81 1.79 3.89 2.16 0.00 6.82 2.47 4.45 11.54 0.00 9.33 4.14 3.00 0.00 0.00 3.24 39 ER5a ExonRegion 0 38.89 36.38 61.39 49.34 26.44 66.92 57.95 67.12 51.90 114.41 50.86 37.45 28.71 86.76 74.70 75.77 62.44 84.06 57.34 57.96 89.50 58.21 62.94 40 E5a_E6a KnownJunction 0 16.15 17.43 28.18 17.21 11.88 48.44 30.47 35.73 26.39 58.21 0.00 0.00 0.00 2.47 0.00 0.00 0.00 14.51 4.80 45.00 13.53 5.27 0.00 41 E5a_E7a KnownJunction 0 43.71 20.65 45.68 25.40 6.54 13.97 36.39 6.33 8.25 40.40 55.33 18.61 12.82 88.53 58.59 53.75 50.40 60.27 56.66 7.80 77.28 59.34 73.07 42 I5_SR2 SilentIntronRegion 0 3.12 4.10 10.63 7.82 7.06 10.98 18.04 4.00 3.28 2.34 2.00 2.74 4.77 4.86 6.86 4.97 5.60 5.63 6.14 9.21 1.62 0.74 2.37 43 I5_AR2 ActiveIntronRegion 0 9.23 10.53 27.38 14.88 12.05 10.46 30.72 9.39 5.67 6.93 5.31 9.78 13.20 5.23 9.56 5.05 6.42 5.69 5.87 15.10 2.20 0.98 1.84 44 E6_Aa NovelBoundary 0 0.00 6.58 11.77 9.92 24.28 15.90 4.37 7.11 5.84 6.29 0.00 0.00 0.00 0.00 0.00 4.36 13.65 0.00 0.00 2.94 2.84 3.12 0.00 45 ER6a ExonRegion 0 12.70 16.21 45.15 30.69 29.19 59.85 22.43 53.22 45.03 64.33 0.12 0.39 0.00 3.45 0.00 0.18 0.00 38.35 6.66 40.36 13.49 4.17 0.09 46 E6_Da NovelBoundary 0 0.00 0.00 4.82 5.59 3.23 11.70 2.03 3.41 1.79 4.86 0.00 6.30 6.17 4.94 0.00 11.88 0.00 6.09 0.00 8.76 11.98 15.31 3.24 47 E6a_E7a KnownJunction 0 14.22 15.92 60.52 46.75 52.46 100.74 18.77 58.33 53.53 50.20 0.00 0.00 0.00 2.12 0.00 0.00 0.00 44.27 4.24 36.82 10.44 0.00 0.00 48 ER7a ExonRegion 0 32.71 36.62 83.96 64.57 22.10 81.16 43.53 52.01 60.82 98.06 48.17 21.42 16.29 67.92 60.25 52.38 44.27 78.13 53.61 50.53 79.59 40.54 42.00 49 E7_Ab KnownBoundary 0 55.94 63.08 80.81 68.59 46.10 108.29 63.64 42.43 69.62 104.09 43.17 6.30 19.48 75.87 75.16 102.96 38.71 99.99 56.66 41.29 80.00 32.51 68.12 50 ER7b ExonRegion 0 40.38 38.48 90.65 55.14 52.82 143.84 81.32 44.63 69.44 113.68 62.63 17.84 14.16 101.02 66.32 91.48 60.01 86.03 56.76 37.74 86.30 47.30 50.28 51 E7a_E8a KnownJunction 0 50.97 45.78 107.54 69.06 59.85 227.31 86.21 60.67 76.13 128.78 42.06 24.31 6.01 87.94 79.49 79.81 80.88 97.75 60.61 44.04 88.40 59.21 53.10 52 ER8a ExonRegion 0 36.03 42.66 84.58 57.63 54.64 165.90 78.14 47.63 64.75 102.76 60.65 30.59 13.76 83.12 70.86 91.41 66.97 77.48 74.25 38.20 88.34 54.31 60.36 53 E8_Da KnownBoundary 0 44.82 49.79 83.79 71.52 74.62 131.46 82.85 50.93 72.22 98.26 65.44 17.71 13.47 58.86 97.04 82.20 51.05 60.11 73.88 31.77 94.70 54.56 56.68 54 ER8b ExonRegion 0 35.41 48.54 80.61 61.39 54.89 104.32 69.87 35.19 49.30 88.43 65.36 27.21 17.69 67.24 58.81 51.33 48.10 52.05 43.55 30.09 79.71 49.71 38.93 55 E8b_E9a KnownJunction 0 45.79 67.29 102.86 89.40 98.73 157.64 116.10 48.96 65.86 106.75 76.23 18.91 6.66 81.94 74.91 86.30 70.03 72.13 62.59 39.18 111.69 62.76 60.18 56 ER9a ExonRegion 0 54.29 61.21 101.09 79.46 74.07 141.71 93.71 75.27 87.13 120.62 73.98 42.18 34.12 92.39 73.18 87.43 64.04 89.80 98.16 44.70 118.19 54.17 58.17 57 E9_Da KnownBoundary 0 0.00 11.38 11.56 1.93 24.53 6.64 0.00 0.00 1.22 3.06 4.42 6.00 0.00 0.00 10.26 7.18 0.00 2.20 4.80 0.00 6.05 0.00 0.00 58 E9a_E10a KnownJunction 0 42.82 66.30 122.41 105.68 57.64 119.31 71.76 90.53 93.86 130.84 43.59 56.57 34.25 75.17 100.38 58.79 75.92 70.55 42.54 41.29 61.59 59.34 62.57 59 ER9b ExonRegion 0 0.00 2.94 1.94 1.02 8.55 1.22 0.00 0.00 0.38 0.00 1.50 3.97 0.00 0.00 1.77 0.66 0.00 0.56 2.74 0.00 2.82 0.00 0.00 60 ER10a ExonRegion 0 55.13 60.85 117.05 96.48 62.98 144.09 99.32 88.19 82.81 123.81 49.91 44.16 33.97 94.99 96.66 71.07 59.66 66.17 98.18 46.51 105.83 58.76 58.14 61 E10_Da KnownBoundary 0 63.05 66.63 113.86 92.43 103.23 197.78 132.27 103.01 72.97 129.39 63.91 50.42 19.80 117.08 172.57 63.66 69.57 81.50 93.18 36.11 70.92 68.83 33.21 62 ER10b ExonRegion 0 66.35 63.69 116.86 98.21 92.38 186.61 109.41 94.41 78.71 139.70 67.53 35.80 13.70 94.22 88.70 87.80 52.60 86.23 122.46 45.32 93.78 60.03 54.16 63 E10_Db KnownBoundary 0 114.84 102.09 137.04 102.98 79.20 200.17 152.67 96.81 88.77 159.80 70.97 30.31 19.97 110.66 97.16 87.50 77.61 96.05 156.15 72.23 115.59 52.23 69.91 64 ER10c ExonRegion 0 80.89 99.56 135.76 102.61 67.22 145.45 114.59 99.85 83.82 138.90 79.01 25.27 17.03 93.89 105.88 119.62 56.88 108.08 110.09 58.50 87.18 73.49 66.62 65 E10_Dc KnownBoundary 0 68.09 102.55 133.79 117.40 115.11 132.54 89.78 95.66 90.48 155.42 75.02 11.10 26.46 83.00 142.90 102.11 51.89 121.17 129.70 63.53 71.11 73.05 53.10 66 ER10d ExonRegion 0 83.87 96.58 157.30 137.50 95.78 176.97 129.58 113.77 88.30 157.02 83.66 30.82 23.11 86.32 116.57 106.91 56.81 101.52 104.51 56.39 91.90 82.45 49.76 67 E10_Dd KnownBoundary 0 131.88 142.67 203.93 178.47 91.77 205.22 160.75 110.00 95.34 193.84 85.55 100.08 31.49 114.90 96.79 121.68 75.83 112.30 136.85 49.22 134.86 86.28 42.08 68 ER10e ExonRegion 0 75.51 83.26 95.59 68.83 52.33 113.06 83.13 51.91 36.69 67.78 28.02 22.22 8.72 46.43 52.53 39.29 20.81 46.65 38.27 32.14 40.86 32.44 25.84 69 E10_De KnownBoundary 0 110.24 40.06 11.29 12.69 15.53 2.61 4.28 10.88 1.68 14.21 6.90 6.00 0.00 0.00 0.00 4.19 4.11 0.00 0.00 0.00 3.15 2.63 0.00 70 ER10f ExonRegion 0 15.98 3.84 4.36 2.37 0.79 0.81 1.92 1.91 0.93 2.63 0.00 0.00 0.00 1.17 0.36 0.00 1.11 0.28 0.88 0.37 3.57 0.32 0.00 71 E10_Df KnownBoundary 0 9.11 8.09 9.49 19.41 0.00 6.47 7.68 7.48 7.96 29.98 2.26 0.00 0.00 0.00 10.14 0.00 0.00 2.57 4.24 5.11 0.00 0.00 0.00 72 ER10g ExonRegion 0 10.58 6.10 0.00 2.73 2.68 3.67 15.89 0.00 0.00 3.41 0.00 0.00 0.00 8.88 7.49 0.00 3.30 1.85 0.00 4.26 2.20 2.08 0.00 73 ER10h ExonRegion 0 9.17 3.39 0.00 1.82 2.68 3.67 11.03 0.00 0.00 0.76 0.00 0.00 0.00 8.12 2.90 0.00 3.30 1.85 0.00 2.84 2.20 2.08 0.00