Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STARD7 Gene 0 76.27 104.50 99.38 94.14 87.94 164.02 158.64 96.63 102.17 145.05 253.90 143.58 101.43 261.71 123.53 242.65 237.79 172.52 107.77 160.53 89.97 81.35 80.54 2 393595 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 443962 Transcript 0 3.26 3.16 0.00 1.56 0.00 3.30 2.25 0.00 0.00 1.84 6.08 3.00 0.00 2.05 0.00 0.00 2.38 5.60 4.80 5.63 0.00 0.00 0.00 4 337288 Transcript 1 69.58 67.62 26.96 23.85 83.28 50.89 91.02 29.60 22.54 34.69 46.39 17.32 35.18 47.51 129.47 33.81 20.63 25.41 15.53 39.89 5.78 19.53 13.21 5 488084 Transcript 0 2.25 1.34 8.39 6.55 5.39 4.36 16.57 5.71 7.13 6.14 11.95 6.15 8.56 3.62 5.49 18.93 16.65 8.64 2.35 11.12 0.53 1.54 4.34 6 462501 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 7 495687 Transcript 0 32.83 42.65 49.85 57.24 52.53 92.39 89.75 69.40 66.99 93.41 166.79 105.82 79.01 177.42 58.47 177.82 164.96 110.07 57.97 92.74 63.54 59.61 42.29 8 479456 Transcript 0 52.42 40.63 35.00 38.61 41.43 38.64 53.02 29.96 22.84 29.94 21.02 20.97 26.60 22.68 33.92 40.50 38.21 47.10 37.68 41.20 15.68 13.25 30.51 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.60 1.45 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 11 ER1c ExonRegion 0 5.99 7.62 2.82 2.11 0.50 11.90 9.76 1.19 1.98 3.85 9.86 1.83 2.82 16.49 8.66 9.92 9.50 11.95 5.95 9.69 4.41 1.30 4.15 12 E1_Da KnownBoundary 0 3.19 0.00 8.49 9.99 0.00 18.06 5.83 6.37 26.30 26.67 58.38 6.30 6.33 82.23 35.48 53.49 79.38 174.31 30.31 41.87 41.02 6.12 7.60 13 E1a_E2a KnownJunction 0 6.52 6.31 0.00 3.13 0.00 5.68 4.50 0.00 0.00 3.12 12.16 6.00 0.00 2.47 0.00 0.00 4.77 11.19 9.60 9.14 0.00 0.00 0.00 14 ER1d ExonRegion 1 18.86 34.27 44.91 30.58 17.82 93.36 66.68 36.08 47.26 95.98 202.13 30.87 27.11 277.12 85.11 147.34 199.94 120.56 59.11 126.93 85.29 35.76 60.20 15 E1_Ad KnownBoundary 1 32.15 57.88 106.92 82.51 50.17 157.92 148.08 92.29 120.83 243.96 338.61 62.57 59.09 601.45 170.84 475.86 410.75 254.03 146.45 225.76 115.59 75.07 115.41 16 ER1e ExonRegion 1 35.63 86.20 117.43 95.17 52.92 185.52 157.48 105.82 136.99 272.87 492.30 95.61 80.64 620.19 214.85 537.62 508.52 327.36 197.23 277.72 196.62 98.33 149.69 17 E1b_E2a KnownJunction 0 73.86 129.71 153.72 125.99 91.85 249.97 221.08 141.58 179.14 322.02 630.11 168.96 146.91 706.58 266.40 563.70 667.88 426.35 231.07 367.33 298.08 138.51 195.14 18 ER2a ExonRegion 0 70.55 127.72 169.58 165.82 102.35 300.13 254.72 161.42 206.71 360.22 744.54 285.38 179.52 775.25 234.92 630.17 810.37 502.43 279.78 401.00 346.84 194.98 190.96 19 E2_Ab KnownBoundary 0 106.54 179.38 225.36 226.94 155.94 399.88 373.00 220.94 260.15 413.70 870.75 331.46 267.68 929.78 298.91 741.26 962.13 577.11 333.66 471.20 361.21 258.47 219.90 20 ER2b ExonRegion 0 82.35 149.93 209.86 195.77 150.86 382.83 331.73 229.19 262.67 401.16 815.10 420.48 241.90 817.81 265.31 750.04 776.68 530.67 277.18 434.29 339.73 213.19 203.71 21 E2_Da KnownBoundary 0 13.19 2.96 11.50 5.66 4.33 2.90 18.95 0.00 9.46 3.68 10.11 6.30 0.00 9.89 0.00 20.34 8.98 22.84 0.00 13.93 5.75 0.00 0.00 22 E2a_E3b KnownJunction 0 121.06 191.54 273.67 194.68 245.08 487.05 460.35 269.90 286.86 438.17 856.80 543.18 397.38 885.52 327.59 886.60 806.26 527.74 285.47 505.97 335.20 278.06 267.02 23 ER2c ExonRegion 0 2.25 1.34 8.39 6.55 5.39 4.36 16.57 5.71 7.13 6.14 11.95 6.15 8.56 3.62 5.49 18.93 16.65 8.64 2.35 11.12 0.53 1.54 4.34 24 ER3a ExonRegion 0 28.93 56.94 85.37 64.06 60.65 141.81 120.92 93.34 94.28 152.54 261.59 158.75 115.69 290.18 90.91 271.45 264.07 157.67 88.13 152.48 116.06 94.45 75.37 25 ER3b ExonRegion 0 63.97 175.63 260.43 180.37 171.79 381.17 324.37 300.26 291.84 434.37 694.58 549.05 384.58 878.12 305.52 714.28 698.17 435.43 272.90 458.53 299.84 249.85 201.07 26 E3a_E4a KnownJunction 0 74.16 245.09 230.42 183.03 198.90 396.02 370.92 275.44 270.25 398.39 646.11 733.44 504.51 880.22 323.01 700.07 564.66 375.94 268.62 523.61 220.85 210.89 165.43 27 I3 Intron 0 15.91 11.62 8.68 24.06 21.24 14.01 37.11 10.07 13.83 8.22 11.97 19.39 20.44 5.67 5.54 17.52 20.45 11.34 6.90 15.10 2.65 4.01 2.30 28 I3_AR3 ActiveIntronRegion 0 15.06 7.34 10.45 42.97 25.81 8.31 44.00 13.90 19.64 9.87 15.31 21.14 35.59 4.84 3.24 20.75 35.99 10.29 6.12 26.95 0.35 8.37 0.00 29 I3_SR2 SilentIntronRegion 0 11.85 9.96 9.31 35.84 32.64 15.40 68.98 11.41 21.86 9.52 11.98 17.32 35.18 5.68 2.61 13.08 29.71 10.35 6.37 19.57 2.20 8.33 0.29 30 I3_AR4 ActiveIntronRegion 0 11.22 16.37 7.90 34.14 24.48 13.02 59.38 12.27 20.81 8.60 12.85 11.26 19.23 3.33 11.46 16.35 19.81 9.52 1.59 15.32 2.20 4.58 2.94 31 I3_SR3 SilentIntronRegion 0 24.21 17.78 7.98 34.45 30.29 25.03 51.52 10.78 21.09 11.72 11.06 24.40 27.45 4.76 6.49 19.92 13.98 10.93 11.26 12.48 1.25 4.17 2.47 32 I3_AR5 ActiveIntronRegion 0 24.25 13.67 13.51 26.74 29.00 13.88 40.13 12.00 17.31 10.24 11.81 31.19 30.99 8.55 6.77 22.09 20.16 14.91 12.94 17.69 3.52 3.19 1.87 33 E4_Aa NovelBoundary 0 16.52 26.31 26.73 33.63 23.01 33.28 67.39 11.58 9.92 18.64 14.37 12.60 40.91 12.54 8.90 19.05 27.02 25.25 12.89 24.48 4.82 11.88 4.35 34 ER4a ExonRegion 0 88.98 211.17 268.84 222.93 198.43 464.63 372.21 282.96 306.48 431.91 799.95 713.17 512.50 909.25 336.49 797.23 738.37 550.41 341.27 511.72 271.53 239.69 233.09 35 E4_Da KnownBoundary 0 137.14 264.23 329.56 268.96 226.40 482.39 503.32 296.97 350.20 497.59 854.06 742.89 343.65 875.87 275.79 1004.18 939.50 667.32 363.78 574.23 313.15 339.54 273.08 36 E4a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 37 ER4b ExonRegion 0 112.07 269.75 306.63 302.27 243.67 499.44 477.53 311.78 401.14 541.66 1005.24 555.61 312.43 977.42 326.29 1049.90 906.48 687.42 400.82 562.27 319.46 405.45 283.48 38 E4_Db KnownBoundary 0 56.45 34.60 6.18 38.79 47.11 31.40 70.13 33.06 25.43 25.55 62.75 36.76 48.05 62.92 23.73 72.97 74.61 37.27 37.65 37.90 14.70 25.17 7.94 39 E4b_E4c KnownJunction 0 112.02 281.40 294.90 320.14 334.72 609.25 661.87 316.43 403.03 531.01 1230.15 609.65 456.46 994.77 345.51 1008.80 969.61 564.55 320.20 587.14 330.69 314.92 271.20 40 ER4c ExonRegion 0 36.72 28.36 14.34 50.43 44.40 42.97 58.58 45.45 39.69 34.28 71.99 52.89 42.34 64.66 26.03 84.18 65.84 62.47 27.81 33.01 11.02 24.78 9.21 41 E4_Ab KnownBoundary 0 37.12 28.55 12.27 52.71 44.74 66.44 65.71 33.11 34.87 28.12 84.60 93.03 45.61 52.15 19.66 82.37 56.76 59.07 22.87 38.09 8.46 22.84 12.46 42 ER4d ExonRegion 0 53.29 34.62 26.71 50.52 47.75 69.73 81.88 51.05 42.79 54.97 87.07 54.17 49.71 84.09 35.72 97.09 86.70 64.71 34.47 52.53 16.41 31.53 19.06 43 E4_Ac KnownBoundary 0 84.16 26.90 21.64 19.31 62.05 71.38 107.71 25.47 20.51 37.88 65.86 25.81 49.51 65.10 24.35 74.68 84.62 36.64 34.07 40.01 20.94 11.51 19.72 44 E4_Dc KnownBoundary 0 94.76 296.79 320.63 314.28 278.18 449.97 560.65 341.20 344.33 519.56 783.99 377.97 437.31 840.61 325.48 649.06 764.94 308.50 191.91 631.37 218.32 154.68 215.29 45 ER4e ExonRegion 0 120.06 267.59 298.78 312.81 287.50 504.74 564.10 342.59 375.60 537.07 1015.71 488.93 444.10 971.73 318.14 829.94 907.18 413.90 244.94 607.33 271.06 218.34 242.22 46 ER4f ExonRegion 0 110.98 234.02 318.39 294.31 218.65 420.80 382.95 302.51 352.85 502.52 819.44 517.33 409.54 826.98 326.09 659.92 828.77 407.03 247.74 584.18 237.34 193.85 223.52 47 E4d_E5a KnownJunction 0 205.07 340.79 335.77 321.24 261.55 472.63 495.11 289.08 387.26 513.90 991.25 549.03 253.39 840.08 449.72 783.30 907.34 566.67 386.93 565.60 338.48 278.25 270.60 48 ER4g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.57 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 49 I4 Intron 0 19.13 18.82 15.72 22.51 19.87 22.88 36.04 16.07 13.27 17.84 22.66 26.44 25.17 26.28 16.56 33.58 20.95 28.68 13.71 17.86 7.58 10.54 12.64 50 I4_AR1 ActiveIntronRegion 0 19.79 21.09 16.76 25.90 18.20 25.25 39.61 18.83 14.39 18.88 25.62 23.47 23.45 27.31 15.57 34.86 20.20 30.93 13.00 19.53 9.73 10.27 14.99 51 I4_AR2 ActiveIntronRegion 0 18.52 15.28 14.29 17.11 23.37 19.34 30.68 11.62 11.66 16.49 18.03 32.46 28.97 25.15 18.73 32.25 22.91 25.45 15.30 15.38 3.98 11.32 8.86 52 E5_Aa NovelBoundary 1 38.01 25.06 20.96 31.13 52.55 11.47 40.98 12.12 14.32 19.77 36.27 0.00 54.05 29.90 31.89 23.75 21.69 36.89 17.88 43.78 0.00 14.02 11.69 53 ER5a ExonRegion 0 187.88 301.68 342.54 344.71 301.24 548.73 508.48 332.07 417.01 516.23 1151.00 494.30 344.67 971.78 433.42 1003.60 940.36 811.79 434.67 616.02 352.64 310.88 313.08 54 E5a_E6b KnownJunction 0 211.67 405.06 395.88 396.22 315.20 585.86 646.50 380.22 401.59 507.93 1104.86 514.67 398.19 957.45 313.99 923.35 927.16 662.84 335.16 683.59 358.19 206.17 281.95 55 I5 Intron 0 33.76 43.35 20.08 34.70 26.52 15.90 30.48 13.56 9.88 10.50 11.67 14.07 13.39 9.60 14.03 18.72 23.86 14.24 10.85 19.44 6.25 9.79 8.34 56 I5_AR1 ActiveIntronRegion 0 39.40 50.60 23.39 40.36 30.85 18.57 35.51 15.77 11.50 12.26 13.63 16.21 15.40 11.11 16.11 21.75 27.78 16.61 12.32 22.66 7.29 11.40 9.73 57 E6_Aa NovelBoundary 0 16.00 17.89 39.44 26.10 22.16 18.23 21.37 31.13 27.03 22.62 24.90 18.91 12.99 13.95 33.50 24.61 30.76 35.40 62.12 11.38 20.51 15.37 15.19 58 ER6a ExonRegion 0 52.42 40.63 35.00 38.61 41.43 38.64 53.02 29.96 22.84 29.94 21.02 20.97 26.60 22.68 33.92 40.50 38.21 47.10 37.68 41.20 15.68 13.25 30.51 59 E6_Ab KnownBoundary 0 101.35 43.68 47.07 65.89 70.20 46.34 70.57 54.83 29.95 54.13 12.48 12.00 28.24 14.13 24.23 26.92 28.52 25.37 25.04 52.92 14.15 8.08 11.01 60 ER6b ExonRegion 0 251.44 356.97 370.78 336.99 276.94 581.71 532.82 368.51 357.08 521.70 970.94 642.46 432.26 927.45 425.97 880.88 890.89 668.34 363.66 599.87 336.72 281.80 280.52 61 E6_Da NovelBoundary 0 84.83 26.90 36.37 51.44 38.29 38.22 61.34 20.04 27.63 21.52 11.53 17.41 27.27 22.72 29.30 25.04 25.99 39.38 13.46 27.36 11.55 11.45 12.55 62 E6a_E7a KnownJunction 0 233.52 348.42 371.63 334.69 277.50 565.75 571.47 345.39 344.87 493.91 846.58 642.21 417.02 868.04 557.89 733.65 819.17 658.03 398.51 514.09 356.33 237.52 282.72 63 I6 Intron 0 35.98 18.73 10.67 13.67 24.64 14.29 32.35 16.88 8.15 11.20 13.01 11.50 11.77 6.83 10.88 17.37 27.47 16.28 11.28 16.20 2.34 4.80 3.64 64 I6_AR1 ActiveIntronRegion 0 36.23 18.86 10.75 13.76 24.81 14.39 32.58 16.99 8.21 11.27 13.10 11.58 11.86 6.88 10.96 17.49 27.67 16.39 11.36 16.31 2.36 4.83 3.67 65 E7_Aa NovelBoundary 1 64.46 15.06 41.51 36.79 18.25 10.56 52.33 38.45 17.85 21.81 16.95 17.86 45.94 14.95 18.67 39.65 18.23 36.15 26.92 30.62 22.67 5.02 3.67 66 ER7a ExonRegion 0 234.18 396.17 339.52 303.77 333.50 623.94 570.72 310.87 337.87 481.11 817.82 515.52 326.74 916.21 440.38 742.87 824.20 553.05 377.53 501.52 349.83 268.21 244.79 67 E7_Da KnownBoundary 0 262.94 450.18 383.58 302.49 377.67 759.96 604.45 322.18 351.65 443.28 742.61 673.42 363.77 753.49 474.57 642.48 755.02 604.10 360.29 569.69 338.23 229.93 243.46 68 ER7b ExonRegion 0 85.42 104.24 80.90 79.03 79.63 133.55 138.30 77.48 75.52 101.68 157.48 99.62 72.57 153.78 100.24 163.26 134.85 104.50 76.20 104.78 44.69 64.32 56.39 69 ER7c ExonRegion 1 201.07 135.23 90.06 70.19 159.21 124.70 175.42 85.56 53.11 80.28 107.28 56.28 93.80 117.75 307.53 101.05 47.86 61.90 30.26 94.68 15.43 45.84 29.37 70 ER7d ExonRegion 1 69.58 67.62 26.96 23.85 83.28 50.89 91.02 29.60 22.54 34.69 46.39 17.32 35.18 47.51 129.47 33.81 20.63 25.41 15.53 39.89 5.78 19.53 13.21 71 IG31_AR1 ActiveIntergenicRegion 0 0.00 4.07 1.23 6.81 3.44 18.60 17.21 0.74 0.00 1.64 0.00 0.00 0.00 1.62 6.22 11.89 0.00 9.24 8.65 9.73 2.20 0.00 2.94